11-866633-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866633
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866633
    reference: chr 11
allele count: 4
allele frequency: 3.485899536375362e-5
allele num: 114748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*3C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*3C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2301C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1729C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*3C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  hgvsc: ENST00000525201.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*3C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1709C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

11-866634-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866634
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866634
    reference: chr 11
allele count: 4
allele frequency: 3.490157755130532e-5
allele num: 114608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1730G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  hgvsc: ENST00000525201.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1710G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*4G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*4G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2302G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*4G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*4G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17699
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

11-866634-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866634
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866634
    reference: chr 11
allele count: 1
allele frequency: 8.72539438782633e-6
allele num: 114608
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*4G>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*4G>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*4G>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2302G>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*4G>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*4G>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*4G>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1730G>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*4G>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*4G>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  hgvsc: ENST00000525201.1:c.*4G>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1710G>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*4G>T
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

11-866640-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866640
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866640
    reference: chr 11
allele count: 10
allele frequency: 8.800647727672756e-5
allele num: 113628
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*10C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2308C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*10C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*10C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  hgvsc: ENST00000525201.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1736C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*10C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1716C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22949
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17247
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

11-866641-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866641
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866641
    reference: chr 11
allele count: 2
allele frequency: 1.763637325620359e-5
allele num: 113402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*11G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1717G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*11G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  hgvsc: ENST00000525201.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*11G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1737G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2309G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*11G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22568
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17158
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

11-866644-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866644
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866644
    reference: chr 11
allele count: 109
allele frequency: 9.676674774950728e-4
allele num: 112642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2312C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  hgvsc: ENST00000525201.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*14C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1720C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*14C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*14C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1740C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*14C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21281
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 16471
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

11-866645-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866645
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866645
    reference: chr 11
allele count: 1
allele frequency: 8.895056127804167e-6
allele num: 112422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*15G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*15G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*15G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*15G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*15G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*15G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1741G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*15G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*15G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  hgvsc: ENST00000525201.1:c.*15G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2313G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1721G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*15G>A
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/11-866651-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866651
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866651
    reference: chr 11
allele count: 1
allele frequency: 8.990380293086398e-6
allele num: 111230
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*21C>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*21C>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*21C>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*21C>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1727C>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  hgvsc: ENST00000525201.1:c.*21C>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*21C>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1747C>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2319C>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*21C>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*21C>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*21C>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*21C>A
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

11-866659-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866659
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866659
    reference: chr 11
allele count: 9
allele frequency: 8.269170694059061e-5
allele num: 108838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1755A>G
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*29A>G
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*29A>G
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  hgvsc: ENST00000525201.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*29A>G
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2327A>G
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*29A>G
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1735A>G
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6783
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18116
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11217
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-866662-A-ACGCCCACGGGGAGATGGCCG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866662
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866682
    reference: chr 11
allele count: 1
allele frequency: 9.276265746461104e-6
allele num: 107802
alternate allele: ACGCCCACGGGGAGATGGCCG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8933
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-866663-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866663
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866663
    reference: chr 11
allele count: 30
allele frequency: 2.79741146192723e-4
allele num: 107242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1739C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1759C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*33C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*33C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  hgvsc: ENST00000525201.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*33C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*33C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2331C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8855
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9602
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19989
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9990
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

11-866664-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866664
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866664
    reference: chr 11
allele count: 1
allele frequency: 9.366277653934773e-6
allele num: 106766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*34G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2332G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*34G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*34G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*34G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*34G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*34G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*34G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*34G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*34G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  hgvsc: ENST00000525201.1:c.*34G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1760G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1740G>A
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10184
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

11-866665-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866665
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866665
    reference: chr 11
allele count: 2
allele frequency: 1.876313419393576e-5
allele num: 106592
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1761C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*35C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1741C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*35C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*35C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*35C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  hgvsc: ENST00000525201.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2333C>T
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10799
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

11-866666-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866666
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866666
    reference: chr 11
allele count: 1
allele frequency: 9.408399819358724e-6
allele num: 106288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*36C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2334C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*36C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*36C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*36C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*36C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  hgvsc: ENST00000525201.1:c.*36C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*36C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*36C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*36C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1742C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*36C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1762C>T
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11464
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

11-866669-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866669
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866669
    reference: chr 11
allele count: 2
allele frequency: 1.913655848132272e-5
allele num: 104512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*39C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*39C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  hgvsc: ENST00000525201.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*39C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*39C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1745C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2337C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1765C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13985
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

11-866670-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866670
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866670
    reference: chr 11
allele count: 196
allele frequency: 1.885521885521885e-3
allele num: 103950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*40G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*40G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*40G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1746G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*40G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*40G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1766G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*40G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*40G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*40G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*40G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  hgvsc: ENST00000525201.1:c.*40G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2338G>A
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6765
  bin: 2.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6625
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20671
  bin: 1.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6013
  bin: 2.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

11-866671-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866671
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866671
    reference: chr 11
allele count: 1
allele frequency: 9.63094229139379e-6
allele num: 103832
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*41G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*41G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1767G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000431943
  ensembl transcript: ENST00000525201
  gene symbol: TSPAN4
  hgvsc: ENST00000525201.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*41G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1747G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*41G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2339G>A
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20674
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15156
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

11-866681-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866681
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866681
    reference: chr 11
allele count: 4
allele frequency: 4.188569394123437e-5
allele num: 95498
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1757C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2349C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*51C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*51C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*51C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*51C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*51C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*51C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*51C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*51C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1777C>T
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*51C>T
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8197
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9554
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15768
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

11-866682-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 866682
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 866682
    reference: chr 11
allele count: 4
allele frequency: 4.342350948803682e-5
allele num: 92116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380555
  ensembl transcript: ENST00000397408
  gene symbol: TSPAN4
  hgvsc: ENST00000397408.1:c.*52G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000464987
  gene symbol: TSPAN4
  hgvsc: ENST00000464987.1:n.1778G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000494815
  gene symbol: TSPAN4
  hgvsc: ENST00000494815.1:n.1758G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386513
  ensembl transcript: ENST00000409543
  gene symbol: TSPAN4
  hgvsc: ENST00000409543.2:c.*52G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380554
  ensembl transcript: ENST00000397406
  gene symbol: TSPAN4
  hgvsc: ENST00000397406.1:c.*52G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214063
  ensembl transcript: ENST00000468468
  gene symbol: TSPAN4
  hgvsc: ENST00000468468.1:n.2350G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000324304
  ensembl transcript: ENST00000346501
  gene symbol: TSPAN4
  hgvsc: ENST00000346501.4:c.*52G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000386899
  ensembl transcript: ENST00000409531
  gene symbol: TSPAN4
  hgvsc: ENST00000409531.1:c.*52G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380558
  ensembl transcript: ENST00000397411
  gene symbol: TSPAN4
  hgvsc: ENST00000397411.2:c.*52G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380553
  ensembl transcript: ENST00000397404
  gene symbol: TSPAN4
  hgvsc: ENST00000397404.1:c.*52G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380551
  ensembl transcript: ENST00000397396
  gene symbol: TSPAN4
  hgvsc: ENST00000397396.1:c.*52G>A
  variant of: http://identifiers.org/hgnc/11859
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000214063
  ensembl protein: ENSP00000380552
  ensembl transcript: ENST00000397397
  gene symbol: TSPAN4
  hgvsc: ENST00000397397.2:c.*52G>A
  variant of: http://identifiers.org/hgnc/11859
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19106
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9773
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-869807-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869807
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869807
    reference: chr 11
allele count: 27
allele frequency: 2.255036247619684e-4
allele num: 119732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.*51T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.*51T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.*51T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.*51T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.*51T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.*51T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.*51T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.*51T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.*51T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.*51T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.526T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.*51T>C
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7297
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11031
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5128
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10471
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 2
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

11-869808-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869808
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869808
    reference: chr 11
allele count: 88
allele frequency: 7.351958294345676e-4
allele num: 119696
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.*50G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.*50G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.*50G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.*50G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.*50G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.*50G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.*50G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.*50G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.*50G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.*50G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.*50G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.525G>C
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11030
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7296
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10494
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9137
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 5.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-869809-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869809
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869809
    reference: chr 11
allele count: 1
allele frequency: 8.351149118118652e-6
allele num: 119744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.*49A>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.524A>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.*49A>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.*49A>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.*49A>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.*49A>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.*49A>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.*49A>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.*49A>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.*49A>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.*49A>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.*49A>T
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7289
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/11-869819-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869819
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869819
    reference: chr 11
allele count: 3
allele frequency: 2.504842695878699e-5
allele num: 119768
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.*39T>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.*39T>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.*39T>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.*39T>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.514T>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.*39T>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.*39T>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.*39T>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.*39T>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.*39T>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.*39T>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.*39T>G
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

11-869825-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869825
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869825
    reference: chr 11
allele count: 2
allele frequency: 1.669421211665915e-5
allele num: 119802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.*33C>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.*33C>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.508C>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.*33C>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.*33C>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.*33C>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.*33C>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.*33C>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.*33C>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.*33C>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.*33C>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.*33C>A
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7296
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10815
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

11-869828-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869828
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869828
    reference: chr 11
allele count: 164
allele frequency: 1.36910824303341e-3
allele num: 119786
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.*30G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.*30G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.*30G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.*30G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.*30G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.*30G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.*30G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.*30G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.*30G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.505G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.*30G>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.*30G>C
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11231
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10877
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7301
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
num of homozygotes: 1
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

11-869830-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869830
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869830
    reference: chr 11
allele count: 3
allele frequency: 2.504633572108401e-5
allele num: 119778
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.503G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.*28G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.*28G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.*28G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.*28G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.*28G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.*28G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.*28G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.*28G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.*28G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.*28G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.*28G>A
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7308
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

11-869836-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869836
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869836
    reference: chr 11
allele count: 1
allele frequency: 8.341953351796856e-6
allele num: 119876
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.*22G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.*22G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.*22G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.*22G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.*22G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.*22G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.*22G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.*22G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.*22G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.*22G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.*22G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.497G>A
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

11-869837-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869837
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869837
    reference: chr 11
allele count: 209
allele frequency: 1.743439163149202e-3
allele num: 119878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.*21G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.*21G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.*21G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.*21G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.*21G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.*21G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.*21G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.*21G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.*21G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.*21G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.496G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.*21G>A
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 11184
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11349
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 7295
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 5.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 9164
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
num of homozygotes: 1
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

11-869839-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869839
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869839
    reference: chr 11
allele count: 1
allele frequency: 8.340840089413805e-6
allele num: 119892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.*19G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.*19G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.*19G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.*19G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.*19G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.*19G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.494G>A
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

11-869840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869840
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869840
    reference: chr 11
allele count: 4
allele frequency: 3.33555703802535e-5
allele num: 119920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.*18C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.*18C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.*18C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.*18C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.493C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.*18C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.*18C>T
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-869846-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869846
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869846
    reference: chr 11
allele count: 5
allele frequency: 4.168056018672891e-5
allele num: 119960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.*12G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.*12G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.*12G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.*12G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.*12G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.*12G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.487G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

11-869850-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869850
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869850
    reference: chr 11
allele count: 4
allele frequency: 3.333833408344585e-5
allele num: 119982
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.*8T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.*8T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.*8T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.*8T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.483T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.*8T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.*8T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.*8T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.*8T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.*8T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.*8T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.*8T>C
  variant of: http://identifiers.org/hgnc/28474
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.*8T>C
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

11-869856-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869856
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869856
    reference: chr 11
allele count: 1
allele frequency: 8.333194446759221e-6
allele num: 120002
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.477T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.*2T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.*2T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.*2T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.*2T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.*2T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.*2T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.*2T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.*2T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.*2T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.*2T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.*2T>C
  variant of: http://identifiers.org/hgnc/28474
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.*2T>C
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD

11-869858-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869858
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869859
    reference: chr 11
allele count: 134
allele frequency: 1.116592227184854e-3
allele num: 120008
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.324dupA
  hgvsp: ENST00000529539.1:c.324dupA(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: frameshift_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1256dupA
  hgvsp: ENST00000336845.5:c.1256dupA(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: frameshift_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1181dupA
  hgvsp: ENST00000323578.8:c.1181dupA(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: stop_retained_variant
  consequence: frameshift_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1256dupA
  hgvsp: ENST00000454838.2:c.1256dupA(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1271dupA
  hgvsp: ENST00000323541.7:c.1271dupA(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: frameshift_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.209dupA
  hgvsp: ENST00000532909.1:c.209dupA(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: frameshift_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1181dupA
  hgvsp: ENST00000436108.2:c.1181dupA(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: frameshift_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1181dupA
  hgvsp: ENST00000449825.1:c.1181dupA(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: frameshift_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1256dupA
  hgvsp: ENST00000528581.1:c.1256dupA(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.474dupA
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: frameshift_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1088dupA
  hgvsp: ENST00000429789.2:c.1088dupA(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.253dupA
  hgvsp: ENST00000534207.1:c.253dupA(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 9180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5547
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
hgvs: p.Ter419Ter
num of homozygotes: 1
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

11-869869-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869869
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869869
    reference: chr 11
allele count: 8
allele frequency: 6.664445184938353e-5
allele num: 120040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1246G>A
  hgvsp: ENSP00000338838.5:p.Asp416Asn
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1261G>A
  hgvsp: ENSP00000324821.7:p.Asp421Asn
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.199G>A
  hgvsp: ENSP00000433879.1:p.Asp67Asn
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1246G>A
  hgvsp: ENSP00000398722.2:p.Asp416Asn
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1171G>A
  hgvsp: ENSP00000391255.1:p.Asp391Asn
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1246G>A
  hgvsp: ENSP00000435503.1:p.Asp416Asn
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1171G>A
  hgvsp: ENSP00000388156.2:p.Asp391Asn
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.243G>A
  hgvsp: ENSP00000431356.1:p.Asp82Asn
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.314G>A
  hgvsp: ENSP00000431169.1:p.Asp106Asn
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1171G>A
  hgvsp: ENSP00000325055.8:p.Asp391Asn
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.464G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1078G>A
  hgvsp: ENSP00000416034.2:p.Asp360Asn
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp416Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-869870-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869870
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869870
    reference: chr 11
allele count: 9
allele frequency: 7.498500299940011e-5
allele num: 120024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1245C>T
  hgvsp: ENST00000336845.5:c.1245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1077C>T
  hgvsp: ENST00000429789.2:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.313C>T
  hgvsp: ENST00000529539.1:c.313C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1170C>T
  hgvsp: ENST00000449825.1:c.1170C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1245C>T
  hgvsp: ENST00000528581.1:c.1245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.242C>T
  hgvsp: ENST00000534207.1:c.242C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.463C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1170C>T
  hgvsp: ENST00000323578.8:c.1170C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1245C>T
  hgvsp: ENST00000454838.2:c.1245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1260C>T
  hgvsp: ENST00000323541.7:c.1260C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.198C>T
  hgvsp: ENST00000532909.1:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1170C>T
  hgvsp: ENST00000436108.2:c.1170C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Tyr415Tyr
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

11-869871-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869871
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869871
    reference: chr 11
allele count: 1
allele frequency: 8.331666999933347e-6
allele num: 120024
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1169A>C
  hgvsp: ENSP00000325055.8:p.Tyr390Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.462A>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1244A>C
  hgvsp: ENSP00000435503.1:p.Tyr415Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.197A>C
  hgvsp: ENSP00000433879.1:p.Tyr66Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1169A>C
  hgvsp: ENSP00000391255.1:p.Tyr390Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1259A>C
  hgvsp: ENSP00000324821.7:p.Tyr420Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1244A>C
  hgvsp: ENSP00000338838.5:p.Tyr415Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1244A>C
  hgvsp: ENSP00000398722.2:p.Tyr415Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.241A>C
  hgvsp: ENSP00000431356.1:p.Tyr81Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.312A>C
  hgvsp: ENSP00000431169.1:p.Tyr105Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1169A>C
  hgvsp: ENSP00000388156.2:p.Tyr390Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1076A>C
  hgvsp: ENSP00000416034.2:p.Tyr359Ser
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr415Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

11-869880-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869880
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869880
    reference: chr 11
allele count: 1
allele frequency: 8.332500083325001e-6
allele num: 120012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.232A>T
  hgvsp: ENSP00000431356.1:p.Asp78Val
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.188A>T
  hgvsp: ENSP00000433879.1:p.Asp63Val
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.303A>T
  hgvsp: ENSP00000431169.1:p.Asp102Val
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1160A>T
  hgvsp: ENSP00000388156.2:p.Asp387Val
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1067A>T
  hgvsp: ENSP00000416034.2:p.Asp356Val
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1235A>T
  hgvsp: ENSP00000435503.1:p.Asp412Val
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.453A>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1160A>T
  hgvsp: ENSP00000391255.1:p.Asp387Val
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1235A>T
  hgvsp: ENSP00000338838.5:p.Asp412Val
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1250A>T
  hgvsp: ENSP00000324821.7:p.Asp417Val
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1235A>T
  hgvsp: ENSP00000398722.2:p.Asp412Val
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1160A>T
  hgvsp: ENSP00000325055.8:p.Asp387Val
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp412Val
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD

11-869885-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869885
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869885
    reference: chr 11
allele count: 1
allele frequency: 8.332777814812346e-6
allele num: 120008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1155C>T
  hgvsp: ENST00000323578.8:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1155C>T
  hgvsp: ENST00000449825.1:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.448C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1230C>T
  hgvsp: ENST00000336845.5:c.1230C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1155C>T
  hgvsp: ENST00000436108.2:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.183C>T
  hgvsp: ENST00000532909.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1245C>T
  hgvsp: ENST00000323541.7:c.1245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1230C>T
  hgvsp: ENST00000454838.2:c.1230C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1230C>T
  hgvsp: ENST00000528581.1:c.1230C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.298C>T
  hgvsp: ENST00000529539.1:c.298C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.227C>T
  hgvsp: ENST00000534207.1:c.227C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1062C>T
  hgvsp: ENST00000429789.2:c.1062C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly410Gly
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

11-869890-GGCCCAGCTCCCAGATAGAGACCCCAAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869890
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869863
    reference: chr 11
allele count: 1
allele frequency: 8.333333333333334e-6
allele num: 120000
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsp: ENSP00000388156.2:p.Val375_Gly383del
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsp: ENSP00000338838.5:p.Val400_Gly408del
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsp: ENSP00000433879.1:p.Val51_Gly59del
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsp: ENSP00000325055.8:p.Val375_Gly383del
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsp: ENSP00000324821.7:p.Val405_Gly413del
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsp: ENSP00000435503.1:p.Val400_Gly408del
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsp: ENSP00000431356.1:p.Val66_Gly74del
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsp: ENSP00000391255.1:p.Val375_Gly383del
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsp: ENSP00000416034.2:p.Val344_Gly352del
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsp: ENSP00000398722.2:p.Val400_Gly408del
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsp: ENSP00000431169.1:p.Val90_Gly98del
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val400_Gly408del
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: GGCCCAGCTCCCAGATAGAGACCCCAAC
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

11-869892-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869892
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869892
    reference: chr 11
allele count: 1
allele frequency: 8.334027835652971e-6
allele num: 119990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1223G>A
  hgvsp: ENSP00000435503.1:p.Gly408Asp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1148G>A
  hgvsp: ENSP00000391255.1:p.Gly383Asp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1055G>A
  hgvsp: ENSP00000416034.2:p.Gly352Asp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.220G>A
  hgvsp: ENSP00000431356.1:p.Gly74Asp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.176G>A
  hgvsp: ENSP00000433879.1:p.Gly59Asp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1148G>A
  hgvsp: ENSP00000388156.2:p.Gly383Asp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.291G>A
  hgvsp: ENSP00000431169.1:p.Gly98Asp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1223G>A
  hgvsp: ENSP00000338838.5:p.Gly408Asp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.441G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1148G>A
  hgvsp: ENSP00000325055.8:p.Gly383Asp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1238G>A
  hgvsp: ENSP00000324821.7:p.Gly413Asp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1223G>A
  hgvsp: ENSP00000398722.2:p.Gly408Asp
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly408Asp
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

11-869893-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869893
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869893
    reference: chr 11
allele count: 5
allele frequency: 4.166875010417187e-5
allele num: 119994
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1222G>A
  hgvsp: ENSP00000398722.2:p.Gly408Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1147G>A
  hgvsp: ENSP00000325055.8:p.Gly383Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1147G>A
  hgvsp: ENSP00000391255.1:p.Gly383Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1237G>A
  hgvsp: ENSP00000324821.7:p.Gly413Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1054G>A
  hgvsp: ENSP00000416034.2:p.Gly352Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.290G>A
  hgvsp: ENSP00000431169.1:p.Gly98Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.440G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.219G>A
  hgvsp: ENSP00000431356.1:p.Gly74Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.175G>A
  hgvsp: ENSP00000433879.1:p.Gly59Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1147G>A
  hgvsp: ENSP00000388156.2:p.Gly383Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1222G>A
  hgvsp: ENSP00000338838.5:p.Gly408Ser
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1222G>A
  hgvsp: ENSP00000435503.1:p.Gly408Ser
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly408Ser
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

11-869906-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869906
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869906
    reference: chr 11
allele count: 1
allele frequency: 8.336668000533546e-6
allele num: 119952
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.277T>C
  hgvsp: ENST00000529539.1:c.277T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.427T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1134T>C
  hgvsp: ENST00000449825.1:c.1134T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.206T>C
  hgvsp: ENST00000534207.1:c.206T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1209T>C
  hgvsp: ENST00000336845.5:c.1209T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1041T>C
  hgvsp: ENST00000429789.2:c.1041T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1134T>C
  hgvsp: ENST00000323578.8:c.1134T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1209T>C
  hgvsp: ENST00000528581.1:c.1209T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1224T>C
  hgvsp: ENST00000323541.7:c.1224T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.162T>C
  hgvsp: ENST00000532909.1:c.162T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1209T>C
  hgvsp: ENST00000454838.2:c.1209T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1134T>C
  hgvsp: ENST00000436108.2:c.1134T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser403Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-869915-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869915
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869915
    reference: chr 11
allele count: 3
allele frequency: 2.503964610633503e-5
allele num: 119810
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1125T>C
  hgvsp: ENST00000323578.8:c.1125T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1200T>C
  hgvsp: ENST00000336845.5:c.1200T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1125T>C
  hgvsp: ENST00000436108.2:c.1125T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.153T>C
  hgvsp: ENST00000532909.1:c.153T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1200T>C
  hgvsp: ENST00000454838.2:c.1200T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.197T>C
  hgvsp: ENST00000534207.1:c.197T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1215T>C
  hgvsp: ENST00000323541.7:c.1215T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1125T>C
  hgvsp: ENST00000449825.1:c.1125T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.268T>C
  hgvsp: ENST00000529539.1:c.268T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1032T>C
  hgvsp: ENST00000429789.2:c.1032T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.418T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1200T>C
  hgvsp: ENST00000528581.1:c.1200T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val400Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

11-869916-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869916
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869916
    reference: chr 11
allele count: 1
allele frequency: 8.349057391420508e-6
allele num: 119774
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.267T>C
  hgvsp: ENSP00000431169.1:p.Val90Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1199T>C
  hgvsp: ENSP00000435503.1:p.Val400Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.417T>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1199T>C
  hgvsp: ENSP00000398722.2:p.Val400Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1214T>C
  hgvsp: ENSP00000324821.7:p.Val405Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1031T>C
  hgvsp: ENSP00000416034.2:p.Val344Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1124T>C
  hgvsp: ENSP00000388156.2:p.Val375Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.196T>C
  hgvsp: ENSP00000431356.1:p.Val66Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1199T>C
  hgvsp: ENSP00000338838.5:p.Val400Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1124T>C
  hgvsp: ENSP00000391255.1:p.Val375Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.152T>C
  hgvsp: ENSP00000433879.1:p.Val51Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1124T>C
  hgvsp: ENSP00000325055.8:p.Val375Ala
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val400Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-869917-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869917
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869917
    reference: chr 11
allele count: 3
allele frequency: 2.50505185457339e-5
allele num: 119758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1198G>A
  hgvsp: ENSP00000435503.1:p.Val400Ile
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.416G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1123G>A
  hgvsp: ENSP00000388156.2:p.Val375Ile
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.195G>A
  hgvsp: ENSP00000431356.1:p.Val66Ile
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1030G>A
  hgvsp: ENSP00000416034.2:p.Val344Ile
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1198G>A
  hgvsp: ENSP00000398722.2:p.Val400Ile
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.266G>A
  hgvsp: ENSP00000431169.1:p.Val90Ile
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1123G>A
  hgvsp: ENSP00000325055.8:p.Val375Ile
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1123G>A
  hgvsp: ENSP00000391255.1:p.Val375Ile
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.151G>A
  hgvsp: ENSP00000433879.1:p.Val51Ile
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1213G>A
  hgvsp: ENSP00000324821.7:p.Val405Ile
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1198G>A
  hgvsp: ENSP00000338838.5:p.Val400Ile
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val400Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

11-869918-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869918
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869918
    reference: chr 11
allele count: 20
allele frequency: 1.670453026860885e-4
allele num: 119728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.415C>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.265C>G
  hgvsp: ENST00000529539.1:c.265C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.194C>G
  hgvsp: ENST00000534207.1:c.194C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1122C>G
  hgvsp: ENST00000436108.2:c.1122C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1122C>G
  hgvsp: ENST00000323578.8:c.1122C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1122C>G
  hgvsp: ENST00000449825.1:c.1122C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.150C>G
  hgvsp: ENST00000532909.1:c.150C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1197C>G
  hgvsp: ENST00000336845.5:c.1197C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1212C>G
  hgvsp: ENST00000323541.7:c.1212C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1197C>G
  hgvsp: ENST00000528581.1:c.1197C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1197C>G
  hgvsp: ENST00000454838.2:c.1197C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1029C>G
  hgvsp: ENST00000429789.2:c.1029C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly399Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

11-869921-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869921
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869921
    reference: chr 11
allele count: 1
allele frequency: 8.356033892073466e-6
allele num: 119674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.262G>A
  hgvsp: ENST00000529539.1:c.262G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1119G>A
  hgvsp: ENST00000323578.8:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1194G>A
  hgvsp: ENST00000528581.1:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1119G>A
  hgvsp: ENST00000449825.1:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1209G>A
  hgvsp: ENST00000323541.7:c.1209G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1026G>A
  hgvsp: ENST00000429789.2:c.1026G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.191G>A
  hgvsp: ENST00000534207.1:c.191G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1194G>A
  hgvsp: ENST00000336845.5:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.147G>A
  hgvsp: ENST00000532909.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1119G>A
  hgvsp: ENST00000436108.2:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1194G>A
  hgvsp: ENST00000454838.2:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.412G>A
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu398Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD

11-869922-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869922
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869922
    reference: chr 11
allele count: 1
allele frequency: 8.358967500334358e-6
allele num: 119632
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1118T>C
  hgvsp: ENSP00000391255.1:p.Leu373Pro
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1193T>C
  hgvsp: ENSP00000338838.5:p.Leu398Pro
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.190T>C
  hgvsp: ENSP00000431356.1:p.Leu64Pro
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1118T>C
  hgvsp: ENSP00000325055.8:p.Leu373Pro
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1193T>C
  hgvsp: ENSP00000398722.2:p.Leu398Pro
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1118T>C
  hgvsp: ENSP00000388156.2:p.Leu373Pro
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.146T>C
  hgvsp: ENSP00000433879.1:p.Leu49Pro
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.261T>C
  hgvsp: ENSP00000431169.1:p.Leu88Pro
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1025T>C
  hgvsp: ENSP00000416034.2:p.Leu342Pro
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1193T>C
  hgvsp: ENSP00000435503.1:p.Leu398Pro
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1208T>C
  hgvsp: ENSP00000324821.7:p.Leu403Pro
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.411T>C
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu398Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD

11-869928-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869928
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869928
    reference: chr 11
allele count: 1
allele frequency: 8.381948635418762e-6
allele num: 119304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1019G>A
  hgvsp: ENSP00000416034.2:p.Arg340Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1187G>A
  hgvsp: ENSP00000338838.5:p.Arg396Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.255G>A
  hgvsp: ENSP00000431169.1:p.Arg86Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1112G>A
  hgvsp: ENSP00000325055.8:p.Arg371Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1187G>A
  hgvsp: ENSP00000435503.1:p.Arg396Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1187G>A
  hgvsp: ENSP00000398722.2:p.Arg396Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.140G>A
  hgvsp: ENSP00000433879.1:p.Arg47Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1112G>A
  hgvsp: ENSP00000391255.1:p.Arg371Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.184G>A
  hgvsp: ENSP00000431356.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1202G>A
  hgvsp: ENSP00000324821.7:p.Arg401Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1112G>A
  hgvsp: ENSP00000388156.2:p.Arg371Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.405G>A
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg396Gln
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

11-869929-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869929
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869929
    reference: chr 11
allele count: 4
allele frequency: 3.351431061063074e-5
allele num: 119352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1018C>T
  hgvsp: ENSP00000416034.2:p.Arg340Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.254C>T
  hgvsp: ENSP00000431169.1:p.Arg86Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1111C>T
  hgvsp: ENSP00000391255.1:p.Arg371Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1186C>T
  hgvsp: ENSP00000398722.2:p.Arg396Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.183C>T
  hgvsp: ENSP00000431356.1:p.Arg62Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1186C>T
  hgvsp: ENSP00000435503.1:p.Arg396Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1111C>T
  hgvsp: ENSP00000325055.8:p.Arg371Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.404C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.139C>T
  hgvsp: ENSP00000433879.1:p.Arg47Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1111C>T
  hgvsp: ENSP00000388156.2:p.Arg371Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1186C>T
  hgvsp: ENSP00000338838.5:p.Arg396Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1201C>T
  hgvsp: ENSP00000324821.7:p.Arg401Trp
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg396Trp
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

11-869937-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869937
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869937
    reference: chr 11
allele count: 110
allele frequency: 9.820025710612769e-4
allele num: 112016
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1103A>G
  hgvsp: ENSP00000325055.8:p.Glu368Gly
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1178A>G
  hgvsp: ENSP00000338838.5:p.Glu393Gly
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1010A>G
  hgvsp: ENSP00000416034.2:p.Glu337Gly
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1193A>G
  hgvsp: ENSP00000324821.7:p.Glu398Gly
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1178A>G
  hgvsp: ENSP00000435503.1:p.Glu393Gly
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.131A>G
  hgvsp: ENSP00000433879.1:p.Glu44Gly
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.175A>G
  hgvsp: ENSP00000431356.1:p.Glu59Gly
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.246A>G
  hgvsp: ENSP00000431169.1:p.Glu83Gly
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1178A>G
  hgvsp: ENSP00000398722.2:p.Glu393Gly
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1103A>G
  hgvsp: ENSP00000391255.1:p.Glu368Gly
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.396A>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1103A>G
  hgvsp: ENSP00000388156.2:p.Glu368Gly
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10522
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5523
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7013
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8670
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Glu393Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-869937-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869937
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869937
    reference: chr 11
allele count: 2
allele frequency: 1.785459220111413e-5
allele num: 112016
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1010A>C
  hgvsp: ENSP00000416034.2:p.Glu337Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1103A>C
  hgvsp: ENSP00000388156.2:p.Glu368Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1103A>C
  hgvsp: ENSP00000325055.8:p.Glu368Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1193A>C
  hgvsp: ENSP00000324821.7:p.Glu398Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.246A>C
  hgvsp: ENSP00000431169.1:p.Glu83Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1178A>C
  hgvsp: ENSP00000338838.5:p.Glu393Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.131A>C
  hgvsp: ENSP00000433879.1:p.Glu44Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1103A>C
  hgvsp: ENSP00000391255.1:p.Glu368Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.175A>C
  hgvsp: ENSP00000431356.1:p.Glu59Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.396A>C
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1178A>C
  hgvsp: ENSP00000398722.2:p.Glu393Ala
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1178A>C
  hgvsp: ENSP00000435503.1:p.Glu393Ala
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu393Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

11-869942-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869942
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869942
    reference: chr 11
allele count: 1
allele frequency: 8.376331836762046e-6
allele num: 119384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1005G>A
  hgvsp: ENST00000429789.2:c.1005G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1173G>A
  hgvsp: ENST00000454838.2:c.1173G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1173G>A
  hgvsp: ENST00000336845.5:c.1173G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1188G>A
  hgvsp: ENST00000323541.7:c.1188G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.391G>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1098G>A
  hgvsp: ENST00000449825.1:c.1098G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1098G>A
  hgvsp: ENST00000436108.2:c.1098G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1173G>A
  hgvsp: ENST00000528581.1:c.1173G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.126G>A
  hgvsp: ENST00000532909.1:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.241G>A
  hgvsp: ENST00000529539.1:c.241G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1098G>A
  hgvsp: ENST00000323578.8:c.1098G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.170G>A
  hgvsp: ENST00000534207.1:c.170G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg391Arg
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

11-869943-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869943
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869943
    reference: chr 11
allele count: 2
allele frequency: 1.675434775324197e-5
allele num: 119372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1097G>A
  hgvsp: ENSP00000388156.2:p.Arg366Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.169G>A
  hgvsp: ENSP00000431356.1:p.Arg57Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.125G>A
  hgvsp: ENSP00000433879.1:p.Arg42Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1097G>A
  hgvsp: ENSP00000391255.1:p.Arg366Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1172G>A
  hgvsp: ENSP00000435503.1:p.Arg391Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1097G>A
  hgvsp: ENSP00000325055.8:p.Arg366Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1172G>A
  hgvsp: ENSP00000398722.2:p.Arg391Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1187G>A
  hgvsp: ENSP00000324821.7:p.Arg396Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1172G>A
  hgvsp: ENSP00000338838.5:p.Arg391Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1004G>A
  hgvsp: ENSP00000416034.2:p.Arg335Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.240G>A
  hgvsp: ENSP00000431169.1:p.Arg81Gln
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.390G>A
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6951
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg391Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

11-869944-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869944
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869944
    reference: chr 11
allele count: 4
allele frequency: 3.351374901553362e-5
allele num: 119354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1171C>T
  hgvsp: ENSP00000435503.1:p.Arg391Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.168C>T
  hgvsp: ENSP00000431356.1:p.Arg57Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.239C>T
  hgvsp: ENSP00000431169.1:p.Arg81Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1096C>T
  hgvsp: ENSP00000388156.2:p.Arg366Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1171C>T
  hgvsp: ENSP00000398722.2:p.Arg391Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1171C>T
  hgvsp: ENSP00000338838.5:p.Arg391Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.389C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1186C>T
  hgvsp: ENSP00000324821.7:p.Arg396Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.124C>T
  hgvsp: ENSP00000433879.1:p.Arg42Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1096C>T
  hgvsp: ENSP00000325055.8:p.Arg366Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.1003C>T
  hgvsp: ENSP00000416034.2:p.Arg335Trp
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1096C>T
  hgvsp: ENSP00000391255.1:p.Arg366Trp
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6961
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg391Trp
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/11-869948-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869948
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869948
    reference: chr 11
allele count: 2
allele frequency: 1.675434775324197e-5
allele num: 119372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.385G>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.120G>T
  hgvsp: ENSP00000433879.1:p.Gln40His
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.235G>T
  hgvsp: ENSP00000431169.1:p.Gln79His
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1092G>T
  hgvsp: ENSP00000391255.1:p.Gln364His
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.999G>T
  hgvsp: ENSP00000416034.2:p.Gln333His
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.164G>T
  hgvsp: ENSP00000431356.1:p.Gln55His
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1167G>T
  hgvsp: ENSP00000435503.1:p.Gln389His
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1182G>T
  hgvsp: ENSP00000324821.7:p.Gln394His
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1092G>T
  hgvsp: ENSP00000325055.8:p.Gln364His
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1167G>T
  hgvsp: ENSP00000338838.5:p.Gln389His
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1092G>T
  hgvsp: ENSP00000388156.2:p.Gln364His
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1167G>T
  hgvsp: ENSP00000398722.2:p.Gln389His
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln389His
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

11-869952-AGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869952
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869950
    reference: chr 11
allele count: 1
allele frequency: 8.378718056137411e-6
allele num: 119350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1176_1177delCC
  hgvsp: ENSP00000324821.7:p.Leu393AlafsTer33
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.114_115delCC
  hgvsp: ENSP00000433879.1:p.Leu39AlafsTer51
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1161_1162delCC
  hgvsp: ENSP00000435503.1:p.Leu388AlafsTer45
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.993_994delCC
  hgvsp: ENSP00000416034.2:p.Leu332AlafsTer45
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1086_1087delCC
  hgvsp: ENSP00000325055.8:p.Leu363AlafsTer45
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.158_159delCC
  hgvsp: ENSP00000431356.1:p.Leu54AlafsTer45
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.229_230delCC
  hgvsp: ENSP00000431169.1:p.Leu78AlafsTer93
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1086_1087delCC
  hgvsp: ENSP00000391255.1:p.Leu363AlafsTer45
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1161_1162delCC
  hgvsp: ENSP00000338838.5:p.Leu388AlafsTer45
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1161_1162delCC
  hgvsp: ENSP00000398722.2:p.Leu388AlafsTer45
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.379_380delCC
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1086_1087delCC
  hgvsp: ENSP00000388156.2:p.Leu363AlafsTer45
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu388AlafsTer45
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: AGG
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

11-869953-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869953
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869953
    reference: chr 11
allele count: 1
allele frequency: 8.379560575843403e-6
allele num: 119338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.994C>A
  hgvsp: ENSP00000416034.2:p.Leu332Met
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1162C>A
  hgvsp: ENSP00000338838.5:p.Leu388Met
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1177C>A
  hgvsp: ENSP00000324821.7:p.Leu393Met
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1162C>A
  hgvsp: ENSP00000435503.1:p.Leu388Met
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1162C>A
  hgvsp: ENSP00000398722.2:p.Leu388Met
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.380C>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.230C>A
  hgvsp: ENSP00000431169.1:p.Leu78Met
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1087C>A
  hgvsp: ENSP00000391255.1:p.Leu363Met
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1087C>A
  hgvsp: ENSP00000325055.8:p.Leu363Met
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.115C>A
  hgvsp: ENSP00000433879.1:p.Leu39Met
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1087C>A
  hgvsp: ENSP00000388156.2:p.Leu363Met
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.159C>A
  hgvsp: ENSP00000431356.1:p.Leu54Met
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8531
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu388Met
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

11-869954-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869954
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869954
    reference: chr 11
allele count: 2
allele frequency: 1.675884028825205e-5
allele num: 119340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1086C>T
  hgvsp: ENST00000436108.2:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1161C>T
  hgvsp: ENST00000336845.5:c.1161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1086C>T
  hgvsp: ENST00000323578.8:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.993C>T
  hgvsp: ENST00000429789.2:c.993C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.229C>T
  hgvsp: ENST00000529539.1:c.229C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.114C>T
  hgvsp: ENST00000532909.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1176C>T
  hgvsp: ENST00000323541.7:c.1176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1161C>T
  hgvsp: ENST00000528581.1:c.1161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.379C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.158C>T
  hgvsp: ENST00000534207.1:c.158C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1161C>T
  hgvsp: ENST00000454838.2:c.1161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1086C>T
  hgvsp: ENST00000449825.1:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1161C>T
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-869955-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869955
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869955
    reference: chr 11
allele count: 2
allele frequency: 1.675631294090048e-5
allele num: 119358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1085C>A
  hgvsp: ENSP00000325055.8:p.Ser362Tyr
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.378C>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.228C>A
  hgvsp: ENSP00000431169.1:p.Ser77Tyr
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1160C>A
  hgvsp: ENSP00000435503.1:p.Ser387Tyr
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.992C>A
  hgvsp: ENSP00000416034.2:p.Ser331Tyr
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.113C>A
  hgvsp: ENSP00000433879.1:p.Ser38Tyr
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.157C>A
  hgvsp: ENSP00000431356.1:p.Ser53Tyr
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1085C>A
  hgvsp: ENSP00000388156.2:p.Ser362Tyr
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1085C>A
  hgvsp: ENSP00000391255.1:p.Ser362Tyr
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1160C>A
  hgvsp: ENSP00000398722.2:p.Ser387Tyr
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1175C>A
  hgvsp: ENSP00000324821.7:p.Ser392Tyr
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1160C>A
  hgvsp: ENSP00000338838.5:p.Ser387Tyr
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser387Tyr
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

11-869959-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869959
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869959
    reference: chr 11
allele count: 95
allele frequency: 7.965388291717673e-4
allele num: 119266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.227-3C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1084-3C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.156-3C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.112-3C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1159-3C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1174-3C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1084-3C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1159-3C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.377-3C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1159-3C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.991-3C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1084-3C>T
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10297
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6920
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8506
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 4.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
hgvs: c.1159-3C>T
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

11-869961-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869961
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869961
    reference: chr 11
allele count: 1
allele frequency: 8.385322331790435e-6
allele num: 119256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.377-5C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1159-5C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1084-5C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.227-5C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1084-5C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.112-5C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1159-5C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.991-5C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.156-5C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1159-5C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1174-5C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1084-5C>T
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1159-5C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

11-869967-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869967
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869967
    reference: chr 11
allele count: 1
allele frequency: 8.383775717232013e-6
allele num: 119278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1174-11T>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.112-11T>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1084-11T>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1159-11T>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.991-11T>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.227-11T>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1159-11T>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.377-11T>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1084-11T>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1084-11T>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1159-11T>A
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.156-11T>A
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

11-869972-GGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869972
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869970
    reference: chr 11
allele count: 2
allele frequency: 1.678331067586392e-5
allele num: 119166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1159-18_1159-17delAC
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.112-18_112-17delAC
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1159-18_1159-17delAC
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1084-18_1084-17delAC
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1084-18_1084-17delAC
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.227-18_227-17delAC
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1084-18_1084-17delAC
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.377-18_377-17delAC
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.156-18_156-17delAC
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1159-18_1159-17delAC
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1174-18_1174-17delAC
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.991-18_991-17delAC
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8473
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: GGT
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

11-869974-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869974
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869974
    reference: chr 11
allele count: 76
allele frequency: 6.38097796883396e-4
allele num: 119104
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1084-18A>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1159-18A>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.377-18A>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1159-18A>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1174-18A>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1084-18A>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.112-18A>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.156-18A>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1159-18A>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.227-18A>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1084-18A>G
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.991-18A>G
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9850
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 9875
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6899
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8456
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

11-869977-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 869977
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 869977
    reference: chr 11
allele count: 122
allele frequency: 1.024297684415563e-3
allele num: 119106
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000398722
  ensembl transcript: ENST00000454838
  gene symbol: CHID1
  hgvsc: ENST00000454838.2:c.1159-21C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431356
  ensembl transcript: ENST00000534207
  gene symbol: CHID1
  hgvsc: ENST00000534207.1:c.156-21C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000416034
  ensembl transcript: ENST00000429789
  gene symbol: CHID1
  hgvsc: ENST00000429789.2:c.991-21C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000433879
  ensembl transcript: ENST00000532909
  gene symbol: CHID1
  hgvsc: ENST00000532909.1:c.112-21C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000338838
  ensembl transcript: ENST00000336845
  gene symbol: CHID1
  hgvsc: ENST00000336845.5:c.1159-21C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl transcript: ENST00000524538
  gene symbol: CHID1
  hgvsc: ENST00000524538.1:n.377-21C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000391255
  ensembl transcript: ENST00000449825
  gene symbol: CHID1
  hgvsc: ENST00000449825.1:c.1084-21C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000435503
  ensembl transcript: ENST00000528581
  gene symbol: CHID1
  hgvsc: ENST00000528581.1:c.1159-21C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000431169
  ensembl transcript: ENST00000529539
  gene symbol: CHID1
  hgvsc: ENST00000529539.1:c.227-21C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000325055
  ensembl transcript: ENST00000323578
  gene symbol: CHID1
  hgvsc: ENST00000323578.8:c.1084-21C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000324821
  ensembl transcript: ENST00000323541
  gene symbol: CHID1
  hgvsc: ENST00000323541.7:c.1174-21C>T
  variant of: http://identifiers.org/hgnc/28474
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177830
  ensembl protein: ENSP00000388156
  ensembl transcript: ENST00000436108
  gene symbol: CHID1
  hgvsc: ENST00000436108.2:c.1084-21C>T
  variant of: http://identifiers.org/hgnc/28474
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9785
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9834
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8463
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 5.25e1
  variant carriers: 12
num of homozygotes: 1
reference allele: G

GenotypeDepth
all individuals: 94
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 204
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6501
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4793
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 794
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38860
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6072
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.593696426216537e-5
allele num: 15166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.742933029785619e-5
allele num: 63252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.418604e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 3.396e0

QD
type: SiteQuality
SIO_000300: 9.27e0

GenotypeDepth
all individuals: 94
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1028
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4729
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6048
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.896797153024912e-5
allele num: 11240
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.747887190200361e-5
allele num: 63186
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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SIO_000300: 1.023e1

MQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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SIO_000300: 2.7e-3

ReadPosRankSum
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SIO_000300: 4.4e-2

DP
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SIO_000300: 1.419627e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

FS
type: SiteQuality
SIO_000300: 4.567e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

BaseQRankSum
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SIO_000300: -1.623e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63186
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.199040767386091e-4
allele num: 8340
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

VQSLOD
type: SiteQuality
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DP
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SIO_000300: 1.419627e6

MQRankSum
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SIO_000300: 7.46e-1

InbreedingCoeff
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SIO_000300: 2.7e-3

FS
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SIO_000300: 4.567e0

QD
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SIO_000300: 1.023e1

MQ
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SIO_000300: 5.948e1

BaseQRankSum
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SIO_000300: -1.623e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 263
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variant carriers: 0

African
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allele count: 2
allele frequency: 2.056343820686819e-4
allele num: 9726
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.939746111210442e-5
allele num: 11186
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

South Asian
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allele count: 7
allele frequency: 4.692947170823277e-4
allele num: 14916
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62698
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.5e-1

ReadPosRankSum
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SIO_000300: -3.55e-1

VQSLOD
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SIO_000300: 1.11e0

BaseQRankSum
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SIO_000300: 1.96e0

ClippingRankSum
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SIO_000300: 1.61e-1

DP
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SIO_000300: 1.392658e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
type: SiteQuality
SIO_000300: 9.59e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 919
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GenotypeQuality
all individuals: 145
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.722237160527024e-5
allele num: 14876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.676164934629568e-4
allele num: 5966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.07e-1

QD
type: SiteQuality
SIO_000300: 1.102e1

VQSLOD
type: SiteQuality
SIO_000300: -1.385e-1

DP
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SIO_000300: 1.386635e6

MQ
type: SiteQuality
SIO_000300: 5.901e1

MQRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.934e0

FS
type: SiteQuality
SIO_000300: 4.719e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-2

GenotypeDepth
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variant carriers: 4

GenotypeDepth
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variant carriers: 6

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 105

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 5.14436370651405e-4
allele num: 62204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

African
type: Population
allele count: 65
allele frequency: 6.749740394600207e-3
allele num: 9630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
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allele count: 8
allele frequency: 7.2007200720072e-4
allele num: 11110
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14724
num of homozygotes: 0

European (Finnish)
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allele count: 4
allele frequency: 6.756756756756757e-4
allele num: 5920
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

InbreedingCoeff
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SIO_000300: -1.8e-3

VQSLOD
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MQRankSum
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DP
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FS
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SIO_000300: 6.69e-1

QD
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SIO_000300: 1.311e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.61020224140152e-5
allele num: 62104
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
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DP
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VQSLOD
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

QD
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SIO_000300: 1.203e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.625223468226881e-5
allele num: 61530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
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ClippingRankSum
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SIO_000300: -3.82e-1

InbreedingCoeff
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MQ
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QD
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ReadPosRankSum
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VQSLOD
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FS
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DP
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BaseQRankSum
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MQRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1392
bin: 9.75e1
variant carriers: 9

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10790
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.156566745740781e-4
allele num: 9274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.159593148461054e-4
allele num: 60366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5694
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.247e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.27e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

FS
type: SiteQuality
SIO_000300: 3.691e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

DP
type: SiteQuality
SIO_000300: 1.193267e6

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
all individuals: 1385
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16546
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GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.669895130585799e-5
allele num: 59884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.628e0

VQSLOD
type: SiteQuality
SIO_000300: -6.067e-1

MQ
type: SiteQuality
SIO_000300: 5.303e1

MQRankSum
type: SiteQuality
SIO_000300: -3.539e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

BaseQRankSum
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SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 2.4e0

DP
type: SiteQuality
SIO_000300: 1.142939e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.31e-1

GenotypeDepth
all individuals: 94
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variant carriers: 0

GenotypeDepth
all individuals: 60
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variant carriers: 0

GenotypeDepth
all individuals: 95
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variant carriers: 0

GenotypeQuality
all individuals: 6923
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 30

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 415
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variant carriers: 1

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 566
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GenotypeQuality
all individuals: 16652
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GenotypeQuality
all individuals: 574
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variant carriers: 0

East Asian
type: Population
allele count: 27
allele frequency: 3.442999234889059e-3
allele num: 7842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.355592094225026e-5
allele num: 59602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10732
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.360518180479906e-5
allele num: 13586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

BaseQRankSum
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SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

DP
type: SiteQuality
SIO_000300: 1.130911e6

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

ClippingRankSum
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SIO_000300: -1.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.253e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

GenotypeDepth
all individuals: 60
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 95
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variant carriers: 0

GenotypeDepth
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 854
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variant carriers: 0

GenotypeQuality
all individuals: 521
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GenotypeQuality
all individuals: 545
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variant carriers: 0

GenotypeQuality
all individuals: 221
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GenotypeQuality
all individuals: 140
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GenotypeQuality
all individuals: 552
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GenotypeQuality
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GenotypeQuality
all individuals: 2265
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16103
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7210
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variant carriers: 0

GenotypeQuality
all individuals: 1383
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variant carriers: 1

GenotypeQuality
all individuals: 248
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variant carriers: 0

GenotypeQuality
all individuals: 1250
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GenotypeQuality
all individuals: 414
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GenotypeQuality
all individuals: 496
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variant carriers: 0

GenotypeQuality
all individuals: 5305
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variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10710
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.394262052647145e-5
allele num: 13524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7820
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59296
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.266e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.92e0

MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.42e-1

DP
type: SiteQuality
SIO_000300: 1.118284e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeDepth
all individuals: 60
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
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variant carriers: 0

GenotypeDepth
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 1323
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 647
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variant carriers: 0

GenotypeQuality
all individuals: 409
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variant carriers: 0

GenotypeQuality
all individuals: 551
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variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9054
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.570033410434336e-4
allele num: 7782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59268
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.66e0

MQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

BaseQRankSum
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SIO_000300: -2.098e0

DP
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SIO_000300: 1.106608e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.747e-1

GenotypeDepth
all individuals: 823
bin: 3.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 20
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 407
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.691589417416605e-5
allele num: 59116
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.961e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

QD
type: SiteQuality
SIO_000300: 7.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.223e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

DP
type: SiteQuality
SIO_000300: 1.095691e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11208
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GenotypeQuality
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GenotypeQuality
all individuals: 246
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GenotypeQuality
all individuals: 1588
bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 5860
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 846
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.714795253446739e-5
allele num: 58316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10514
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.64642911760208e-5
allele num: 13078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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MQRankSum
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FS
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SIO_000300: 2.272e0

VQSLOD
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SIO_000300: 6.48e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: 3.17e-1

QD
type: SiteQuality
SIO_000300: 1.139e1

DP
type: SiteQuality
SIO_000300: 1.061229e6

GenotypeDepth
all individuals: 95
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variant carriers: 1

GenotypeDepth
all individuals: 205
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variant carriers: 2

GenotypeDepth
all individuals: 14546
bin: 1.75e1
variant carriers: 58

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 880
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GenotypeQuality
all individuals: 10608
bin: 6.25e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 193

GenotypeQuality
all individuals: 391
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 477
bin: 7.25e1
variant carriers: 2

Latino
type: Population
allele count: 1
allele frequency: 9.547450830628223e-5
allele num: 10474
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.329080276448698e-4
allele num: 7524
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.807351940095302e-4
allele num: 8814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 179
allele frequency: 3.087697509142345e-3
allele num: 57972
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.674107142857143e-3
allele num: 5376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

FS
type: SiteQuality
SIO_000300: 1.963e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

DP
type: SiteQuality
SIO_000300: 1.051435e6

QD
type: SiteQuality
SIO_000300: 1.457e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

GenotypeDepth
all individuals: 20
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 66
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variant carriers: 0

GenotypeDepth
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1376
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 244
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variant carriers: 0

GenotypeQuality
all individuals: 100
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.728309713100588e-5
allele num: 57860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5382
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.457e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -1.847e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.065e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

DP
type: SiteQuality
SIO_000300: 1.041131e6

QD
type: SiteQuality
SIO_000300: 6.51e0

GenotypeDepth
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 2782
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variant carriers: 0

GenotypeQuality
all individuals: 6024
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variant carriers: 0

GenotypeQuality
all individuals: 2356
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GenotypeQuality
all individuals: 1379
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1020
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3870
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variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.239464551313832e-4
allele num: 8068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.591590248266607e-5
allele num: 53652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 4.483e0

DP
type: SiteQuality
SIO_000300: 9.82104e5

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

QD
type: SiteQuality
SIO_000300: 1.207e1

GenotypeDepth
all individuals: 66
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3904
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2189
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variant carriers: 0

GenotypeQuality
all individuals: 375
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variant carriers: 0

GenotypeQuality
all individuals: 908
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variant carriers: 1

GenotypeQuality
all individuals: 9172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
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variant carriers: 0

GenotypeQuality
all individuals: 2419
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GenotypeQuality
all individuals: 2791
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
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variant carriers: 4

GenotypeQuality
all individuals: 1074
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GenotypeQuality
all individuals: 137
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GenotypeQuality
all individuals: 11193
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variant carriers: 0

GenotypeQuality
all individuals: 5876
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GenotypeQuality
all individuals: 2507
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variant carriers: 0

GenotypeQuality
all individuals: 425
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GenotypeQuality
all individuals: 241
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GenotypeQuality
all individuals: 366
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GenotypeQuality
all individuals: 5677
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variant carriers: 0

GenotypeQuality
all individuals: 7103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 4.256224728665674e-4
allele num: 9398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.345e1

DP
type: SiteQuality
SIO_000300: 9.77946e5

VQSLOD
type: SiteQuality
SIO_000300: -2.943e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

FS
type: SiteQuality
SIO_000300: 7.801e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeDepth
all individuals: 244
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2535
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
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variant carriers: 0

GenotypeQuality
all individuals: 224
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GenotypeQuality
all individuals: 20710
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variant carriers: 24

GenotypeQuality
all individuals: 363
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GenotypeQuality
all individuals: 505
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GenotypeQuality
all individuals: 3921
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variant carriers: 0

GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
all individuals: 246
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variant carriers: 0

GenotypeQuality
all individuals: 375
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variant carriers: 0

GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 895
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variant carriers: 0

GenotypeQuality
all individuals: 158
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variant carriers: 0

GenotypeQuality
all individuals: 4544
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GenotypeQuality
all individuals: 3319
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
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GenotypeQuality
all individuals: 6332
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11243
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3525
bin: 7.25e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 2.542538627029141e-3
allele num: 10226
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.97e0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

FS
type: SiteQuality
SIO_000300: 2.723e0

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.24e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 2.262038e6

GenotypeDepth
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 357
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variant carriers: 0

GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 714
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 863
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GenotypeQuality
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GenotypeQuality
all individuals: 148
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GenotypeQuality
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GenotypeQuality
all individuals: 20704
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variant carriers: 88

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11452
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GenotypeQuality
all individuals: 226
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GenotypeQuality
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GenotypeQuality
all individuals: 3301
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GenotypeQuality
all individuals: 361
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GenotypeQuality
all individuals: 520
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variant carriers: 0

GenotypeQuality
all individuals: 494
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variant carriers: 0

GenotypeQuality
all individuals: 2527
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3505
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variant carriers: 0

GenotypeQuality
all individuals: 3887
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 84
allele frequency: 8.217569947172765e-3
allele num: 10222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65454
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.601005722212589e-4
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 2.262128e6

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

QD
type: SiteQuality
SIO_000300: 1.503e1

VQSLOD
type: SiteQuality
SIO_000300: 5.5e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

GenotypeDepth
all individuals: 2339
bin: 5.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3535
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4532
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variant carriers: 0

GenotypeQuality
all individuals: 3892
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.784735812133073e-5
allele num: 10220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65474
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.261469e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.145e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.065e0

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 8.9e0

MQ
type: SiteQuality
SIO_000300: 5.882e1

GenotypeDepth
all individuals: 7292
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 523
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GenotypeQuality
all individuals: 378
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GenotypeQuality
all individuals: 69
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GenotypeQuality
all individuals: 244
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65480
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
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allele frequency: 2.934846409704559e-4
allele num: 10222
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BaseQRankSum
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SIO_000300: 3.39e0

DP
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VQSLOD
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QD
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MQ
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MQRankSum
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FS
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ReadPosRankSum
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SIO_000300: -9.2e-2

ClippingRankSum
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SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.216841080554879e-4
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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SIO_000300: 1.188e1

MQRankSum
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SIO_000300: -6.48e-1

ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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SIO_000300: 2.273098e6

MQ
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SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 5.055e0

VQSLOD
type: SiteQuality
SIO_000300: 5.1e-1

BaseQRankSum
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SIO_000300: -1.85e0

GenotypeDepth
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 163

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 48
allele frequency: 7.330258697046516e-4
allele num: 65482
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 113
allele frequency: 1.713679102214134e-2
allele num: 6594
num of homozygotes: 1

Other
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allele count: 3
allele frequency: 3.378378378378379e-3
allele num: 888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

MQRankSum
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MQ
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SIO_000300: 5.952e1

DP
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FS
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VQSLOD
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BaseQRankSum
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SIO_000300: 1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

QD
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SIO_000300: 1.33e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65482
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.217433649866082e-4
allele num: 16428
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 2.276291e6

MQ
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SIO_000300: 5.913e1

FS
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SIO_000300: 0.0e0

MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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SIO_000300: -4.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-1

BaseQRankSum
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SIO_000300: -2.45e0

QD
type: SiteQuality
SIO_000300: 1.269e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526204938799182e-5
allele num: 65522
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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allele num: 8632
num of homozygotes: 0

Other
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InbreedingCoeff
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SIO_000300: 3.0e-3

BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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FS
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DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.049e1

GenotypeDepth
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 208

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.069013351829374e-4
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.252252252252252e-3
allele num: 888
num of homozygotes: 0

South Asian
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allele count: 7
allele frequency: 4.248088360237893e-4
allele num: 16478
num of homozygotes: 0

European (Non-Finnish)
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allele count: 182
allele frequency: 2.777523425815707e-3
allele num: 65526
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European (Finnish)
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allele count: 6
allele frequency: 9.096422073984233e-4
allele num: 6596
num of homozygotes: 0

African
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allele count: 5
allele frequency: 4.890453834115806e-4
allele num: 10224
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MQRankSum
type: SiteQuality
SIO_000300: 4.45e-1

FS
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 2.287159e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.526158354190831e-5
allele num: 65524
num of homozygotes: 0

South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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DP
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QD
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MQ
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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Other
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East Asian
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South Asian
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European (Finnish)
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FS
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ClippingRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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QD
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DP
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MQRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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Other
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European (Finnish)
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ReadPosRankSum
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MQRankSum
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QD
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MQ
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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South Asian
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European (Non-Finnish)
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allele num: 65596
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Latino
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East Asian
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Other
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MQRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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Other
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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VQSLOD
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QD
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DP
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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Latino
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Other
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South Asian
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DP
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QD
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InbreedingCoeff
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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South Asian
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European (Non-Finnish)
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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QD
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 65614
num of homozygotes: 0

East Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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FS
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ClippingRankSum
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BaseQRankSum
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MQ
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MQRankSum
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SIO_000300: -3.65e-1

QD
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InbreedingCoeff
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SIO_000300: 3.4e-3

VQSLOD
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SIO_000300: 7.33e-1

ReadPosRankSum
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SIO_000300: 7.34e-1

DP
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SIO_000300: 2.28703e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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Other
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MQRankSum
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BaseQRankSum
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DP
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VQSLOD
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ClippingRankSum
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MQ
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Other
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South Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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East Asian
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VQSLOD
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ClippingRankSum
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FS
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DP
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
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Latino
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num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 65614
num of homozygotes: 0

Other
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VQSLOD
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InbreedingCoeff
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DP
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QD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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FS
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BaseQRankSum
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MQ
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SIO_000300: 5.707e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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African
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South Asian
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Latino
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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FS
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MQ
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DP
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QD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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FS
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ClippingRankSum
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MQ
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Other
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MQRankSum
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MQ
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QD
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DP
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
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allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.054554340521718e-5
allele num: 65476
num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 7.26e-1

MQRankSum
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BaseQRankSum
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DP
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FS
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ClippingRankSum
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VQSLOD
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QD
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InbreedingCoeff
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SIO_000300: -7.0e-4

MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65448
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Latino
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DP
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SIO_000300: 2.273282e6

MQRankSum
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ClippingRankSum
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MQ
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QD
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InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

FS
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VQSLOD
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BaseQRankSum
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SIO_000300: -5.07e-1

ReadPosRankSum
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SIO_000300: -5.96e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.528164063693878e-5
allele num: 65438
num of homozygotes: 0

Other
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East Asian
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allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
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MQRankSum
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SIO_000300: 4.05e-1

ClippingRankSum
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ReadPosRankSum
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FS
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DP
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MQ
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VQSLOD
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QD
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SIO_000300: 1.194e1

InbreedingCoeff
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SIO_000300: 5.0e-4

BaseQRankSum
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SIO_000300: 2.32e0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65418
num of homozygotes: 0

East Asian
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allele count: 20
allele frequency: 2.320185614849188e-3
allele num: 8620
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10180
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: 2.11e0

QD
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MQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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SIO_000300: -1.27e-1

VQSLOD
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InbreedingCoeff
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SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.899e0

DP
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SIO_000300: 2.270242e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65374
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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MQ
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FS
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.530081400330498e-5
allele num: 65356
num of homozygotes: 0

Latino
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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Other
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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BaseQRankSum
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DP
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FS
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MQ
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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South Asian
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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MQ
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QD
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VQSLOD
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MQRankSum
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SIO_000300: -4.28e-1

InbreedingCoeff
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SIO_000300: 1.4e-3

DP
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SIO_000300: 2.247733e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.522533495736906e-4
allele num: 6568
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.069650366823219e-5
allele num: 65154
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

ClippingRankSum
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DP
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SIO_000300: 2.247205e6

InbreedingCoeff
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SIO_000300: 1.3e-3

QD
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SIO_000300: 1.487e1

BaseQRankSum
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SIO_000300: 1.43e0

MQ
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SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 5.844e0

VQSLOD
type: SiteQuality
SIO_000300: 7.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

GenotypeDepth
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variant carriers: 7

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 63

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 22
allele frequency: 4.119850187265918e-3
allele num: 5340
num of homozygotes: 0

African
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allele count: 23
allele frequency: 2.602398732744965e-3
allele num: 8838
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.366863905325444e-4
allele num: 8450
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.298701298701299e-3
allele num: 770
num of homozygotes: 0

European (Non-Finnish)
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allele count: 62
allele frequency: 1.019938145686649e-3
allele num: 60788
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.871e1

DP
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QD
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VQSLOD
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ClippingRankSum
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FS
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SIO_000300: 1.65183e2

InbreedingCoeff
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SIO_000300: 1.22e-2

MQRankSum
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SIO_000300: 3.9e-2

ReadPosRankSum
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SIO_000300: -3.194e0

BaseQRankSum
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SIO_000300: -3.842e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.760873393203029e-4
allele num: 11358
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5340
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.871e1

InbreedingCoeff
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SIO_000300: 1.22e-2

ClippingRankSum
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FS
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DP
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SIO_000300: 2.255047e6

VQSLOD
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MQRankSum
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SIO_000300: 3.9e-2

BaseQRankSum
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SIO_000300: -3.842e0

QD
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SIO_000300: 2.08e0

ReadPosRankSum
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SIO_000300: -3.194e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65188
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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FS
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SIO_000300: 4.545e0

ReadPosRankSum
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QD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 1.5e-3

DP
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VQSLOD
type: SiteQuality
SIO_000300: -2.169e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.534118802160039e-5
allele num: 65184
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.900990099009902e-5
allele num: 10100
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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VQSLOD
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BaseQRankSum
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MQ
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DP
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ClippingRankSum
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SIO_000300: -5.1e-2

QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 884
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.137416761285175e-5
allele num: 65174
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
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African
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allele count: 0
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
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allele frequency: 0.0e0
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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African
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South Asian
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FS
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VQSLOD
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DP
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

Other
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South Asian
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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BaseQRankSum
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MQ
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DP
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FS
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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European (Non-Finnish)
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European (Finnish)
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East Asian
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South Asian
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MQ
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VQSLOD
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DP
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FS
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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VQSLOD
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MQRankSum
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FS
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DP
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MQ
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InbreedingCoeff
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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Latino
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South Asian
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
all individuals: 3421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21940
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11547
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65122
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-2

QD
type: SiteQuality
SIO_000300: 1.239e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.267952e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.034e0

VQSLOD
type: SiteQuality
SIO_000300: 6.4e-1

GenotypeDepth
all individuals: 5052
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3859
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3400
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21931
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2520
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5741
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10990
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4238
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.977456990310461e-4
allele num: 10114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 1.98e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.48e-1

FS
type: SiteQuality
SIO_000300: 3.933e0

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.072e1

DP
type: SiteQuality
SIO_000300: 2.260756e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

GenotypeDepth
all individuals: 1701
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 3848
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 569
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3368
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2519
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10041
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4199
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21966
bin: 9.75e1
variant carriers: 75

GenotypeQuality
all individuals: 113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5579
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.8833761612967e-5
allele num: 10118
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 9.099733074496481e-4
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.051571559353067e-4
allele num: 6554
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.712319219376198e-5
allele num: 11478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 56
allele frequency: 8.616179955072776e-4
allele num: 64994
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-3

DP
type: SiteQuality
SIO_000300: 2.255824e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

QD
type: SiteQuality
SIO_000300: 1.382e1

VQSLOD
type: SiteQuality
SIO_000300: 5.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1