12-7254498-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254498
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254498
    reference: chr 12
allele count: 3
allele frequency: 2.479215906649257e-5
allele num: 121006
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.486C>T
  hgvsp: ENST00000544702.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.486C>T
  hgvsp: ENST00000543933.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.155+102C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.184C>T
  hgvsp: ENST00000534950.1:c.184C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.486C>T
  hgvsp: ENST00000545337.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.537C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.235C>T
  hgvsp: ENSP00000437569.1:p.Arg79Cys
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.486C>T
  hgvsp: ENST00000266542.4:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.239C>T
  hgvsp: ENSP00000438951.1:p.Arg81Cys
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7995
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25970
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg79Cys
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD

12-7254538-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254538
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254538
    reference: chr 12
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.155+62C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.144C>G
  hgvsp: ENSP00000439180.1:p.Thr49Ser
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.446C>G
  hgvsp: ENSP00000437398.1:p.Thr149Ser
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.446C>G
  hgvsp: ENSP00000441885.1:p.Thr149Ser
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.446C>G
  hgvsp: ENSP00000442611.1:p.Thr149Ser
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.199C>G
  hgvsp: ENSP00000438951.1:p.Asp67Glu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.195C>G
  hgvsp: ENSP00000437569.1:p.Asp65Glu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.446C>G
  hgvsp: ENSP00000266542.4:p.Thr149Ser
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.497C>G
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4270
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr149Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

12-7254539-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254539
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254539
    reference: chr 12
allele count: 4
allele frequency: 3.297065611605671e-5
allele num: 121320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.155+61A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.194A>G
  hgvsp: ENSP00000437569.1:p.Asp65Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.445A>G
  hgvsp: ENSP00000442611.1:p.Thr149Ala
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.198A>G
  hgvsp: ENSP00000438951.1:p.Asp67Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.445A>G
  hgvsp: ENSP00000437398.1:p.Thr149Ala
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.445A>G
  hgvsp: ENSP00000266542.4:p.Thr149Ala
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.445A>G
  hgvsp: ENSP00000441885.1:p.Thr149Ala
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.496A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.143A>G
  hgvsp: ENSP00000439180.1:p.Thr49Ala
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 25014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4271
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5301
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr149Ala
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

12-7254549-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254549
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254549
    reference: chr 12
allele count: 31
allele frequency: 2.555267973425213e-4
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.435G>A
  hgvsp: ENST00000544702.1:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.435G>A
  hgvsp: ENST00000543933.1:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.435G>A
  hgvsp: ENST00000545337.1:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.486G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.155+51G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.133G>A
  hgvsp: ENST00000534950.1:c.133G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.435G>A
  hgvsp: ENST00000266542.4:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.188G>A
  hgvsp: ENSP00000438951.1:p.Gly64Arg
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.184G>A
  hgvsp: ENSP00000437569.1:p.Gly62Arg
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8039
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly62Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

12-7254550-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254550
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254550
    reference: chr 12
allele count: 8
allele frequency: 6.593696426216537e-5
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.485C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.434C>T
  hgvsp: ENSP00000442611.1:p.Ser145Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.187C>T
  hgvsp: ENST00000537833.1:c.187C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.434C>T
  hgvsp: ENSP00000266542.4:p.Ser145Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.132C>T
  hgvsp: ENSP00000439180.1:p.Ser45Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.434C>T
  hgvsp: ENSP00000441885.1:p.Ser145Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.183C>T
  hgvsp: ENST00000534969.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.434C>T
  hgvsp: ENSP00000437398.1:p.Ser145Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.155+50C>T
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24977
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4272
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8014
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 26120
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser145Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

12-7254557-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254557
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254557
    reference: chr 12
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.478C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.427C>G
  hgvsp: ENSP00000441885.1:p.Pro143Ala
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.180C>G
  hgvsp: ENSP00000438951.1:p.Ala61Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.427C>G
  hgvsp: ENSP00000437398.1:p.Pro143Ala
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.427C>G
  hgvsp: ENSP00000442611.1:p.Pro143Ala
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.155+43C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.176C>G
  hgvsp: ENSP00000437569.1:p.Ala59Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.125C>G
  hgvsp: ENSP00000439180.1:p.Pro43Ala
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.427C>G
  hgvsp: ENSP00000266542.4:p.Pro143Ala
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8011
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro143Ala
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

12-7254565-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254565
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254565
    reference: chr 12
allele count: 29
allele frequency: 2.390136155342366e-4
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.419G>A
  hgvsp: ENSP00000441885.1:p.Arg140His
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.117G>A
  hgvsp: ENSP00000439180.1:p.Arg40His
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.419G>A
  hgvsp: ENSP00000266542.4:p.Arg140His
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.470G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.155+35G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.172G>A
  hgvsp: ENST00000537833.1:c.172G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.419G>A
  hgvsp: ENSP00000442611.1:p.Arg140His
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.419G>A
  hgvsp: ENSP00000437398.1:p.Arg140His
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.168G>A
  hgvsp: ENST00000534969.1:c.168G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8040
  bin: 9.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg140His
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

12-7254566-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254566
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254566
    reference: chr 12
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.469C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.418C>T
  hgvsp: ENSP00000266542.4:p.Arg140Cys
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.155+34C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.167C>T
  hgvsp: ENSP00000437569.1:p.Pro56Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.418C>T
  hgvsp: ENSP00000437398.1:p.Arg140Cys
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.171C>T
  hgvsp: ENSP00000438951.1:p.Pro58Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.418C>T
  hgvsp: ENSP00000442611.1:p.Arg140Cys
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.418C>T
  hgvsp: ENSP00000441885.1:p.Arg140Cys
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.116C>T
  hgvsp: ENSP00000439180.1:p.Arg40Cys
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9989
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg140Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

12-7254566-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254566
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254566
    reference: chr 12
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.469C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.418C>G
  hgvsp: ENSP00000266542.4:p.Arg140Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.171C>G
  hgvsp: ENSP00000438951.1:p.Pro58Arg
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.167C>G
  hgvsp: ENSP00000437569.1:p.Pro56Arg
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.418C>G
  hgvsp: ENSP00000442611.1:p.Arg140Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.116C>G
  hgvsp: ENSP00000439180.1:p.Arg40Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.155+34C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.418C>G
  hgvsp: ENSP00000437398.1:p.Arg140Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.418C>G
  hgvsp: ENSP00000441885.1:p.Arg140Gly
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg140Gly
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

12-7254567-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254567
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254567
    reference: chr 12
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.417C>G
  hgvsp: ENSP00000442611.1:p.Phe139Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.417C>G
  hgvsp: ENSP00000266542.4:p.Phe139Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.166C>G
  hgvsp: ENSP00000437569.1:p.Pro56Ala
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.170C>G
  hgvsp: ENSP00000438951.1:p.Pro58Ala
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.417C>G
  hgvsp: ENSP00000437398.1:p.Phe139Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.468C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.155+33C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.115C>G
  hgvsp: ENSP00000439180.1:p.Phe39Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.417C>G
  hgvsp: ENSP00000441885.1:p.Phe139Leu
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5291
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe139Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

12-7254573-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254573
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254573
    reference: chr 12
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.164G>C
  hgvsp: ENSP00000438951.1:p.Asp56His
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.462G>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.155+27G>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.411G>C
  hgvsp: ENST00000543933.1:c.411G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.411G>C
  hgvsp: ENST00000545337.1:c.411G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.411G>C
  hgvsp: ENST00000266542.4:c.411G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.411G>C
  hgvsp: ENST00000544702.1:c.411G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.160G>C
  hgvsp: ENSP00000437569.1:p.Asp54His
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.109G>C
  hgvsp: ENST00000534950.1:c.109G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4269
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8034
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3925
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp54His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

12-7254576-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254576
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254576
    reference: chr 12
allele count: 4
allele frequency: 3.29663084327817e-5
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.155+24G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.106G>A
  hgvsp: ENST00000534950.1:c.106G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.459G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.408G>A
  hgvsp: ENST00000543933.1:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.408G>A
  hgvsp: ENST00000545337.1:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.161G>A
  hgvsp: ENSP00000438951.1:p.Ala55Thr
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.157G>A
  hgvsp: ENSP00000437569.1:p.Ala53Thr
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.408G>A
  hgvsp: ENST00000544702.1:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.408G>A
  hgvsp: ENST00000266542.4:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8037
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26087
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala53Thr
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

12-7254578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254578
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254578
    reference: chr 12
allele count: 3
allele frequency: 2.47255464345762e-5
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.406C>T
  hgvsp: ENSP00000266542.4:p.Arg136Trp
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.457C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.406C>T
  hgvsp: ENSP00000437398.1:p.Arg136Trp
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.406C>T
  hgvsp: ENSP00000441885.1:p.Arg136Trp
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.155+22C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.104C>T
  hgvsp: ENSP00000439180.1:p.Arg36Trp
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.155C>T
  hgvsp: ENSP00000437569.1:p.Ala52Val
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.159C>T
  hgvsp: ENSP00000438951.1:p.Ala54Val
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.406C>T
  hgvsp: ENSP00000442611.1:p.Arg136Trp
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3920
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg136Trp
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

12-7254578-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254578
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254578
    reference: chr 12
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.159C>G
  hgvsp: ENSP00000438951.1:p.Ala54Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.104C>G
  hgvsp: ENSP00000439180.1:p.Arg36Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.457C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.406C>G
  hgvsp: ENSP00000266542.4:p.Arg136Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.155C>G
  hgvsp: ENSP00000437569.1:p.Ala52Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.406C>G
  hgvsp: ENSP00000437398.1:p.Arg136Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.406C>G
  hgvsp: ENSP00000442611.1:p.Arg136Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.406C>G
  hgvsp: ENSP00000441885.1:p.Arg136Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.155+22C>G
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3920
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg136Gly
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD

12-7254578-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254578
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254578
    reference: chr 12
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.155C>A
  hgvsp: ENSP00000437569.1:p.Ala52Glu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.406C>A
  hgvsp: ENST00000266542.4:c.406C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.457C>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.155+22C>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.406C>A
  hgvsp: ENST00000545337.1:c.406C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.406C>A
  hgvsp: ENST00000543933.1:c.406C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.159C>A
  hgvsp: ENSP00000438951.1:p.Ala54Glu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.406C>A
  hgvsp: ENST00000544702.1:c.406C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.104C>A
  hgvsp: ENST00000534950.1:c.104C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala52Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

12-7254611-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254611
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254611
    reference: chr 12
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.424C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.144C>T
  hgvsp: ENST00000545280.1:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.373C>T
  hgvsp: ENSP00000441885.1:p.Gln125Ter
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.126C>T
  hgvsp: ENSP00000438951.1:p.Ser43Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.71C>T
  hgvsp: ENSP00000439180.1:p.Gln25Ter
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.373C>T
  hgvsp: ENSP00000437398.1:p.Gln125Ter
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.373C>T
  hgvsp: ENSP00000266542.4:p.Gln125Ter
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.373C>T
  hgvsp: ENSP00000442611.1:p.Gln125Ter
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.122C>T
  hgvsp: ENSP00000437569.1:p.Ser41Leu
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8052
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln125Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

12-7254615-A-AGGGGGCCTGCCCAGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254615
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254631
    reference: chr 12
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: AGGGGGCCTGCCCAGAG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsp: ENSP00000266542.4:p.Gly124SerfsTer50
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsp: ENSP00000439180.1:p.Gly24SerfsTer125
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsp: ENSP00000437398.1:p.Gly124SerfsTer?
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsp: ENSP00000442611.1:p.Gly124SerfsTer47
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsp: ENSP00000438951.1:p.Trp42LeufsTer20
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsp: ENSP00000437569.1:p.Trp40LeufsTer20
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsp: ENSP00000438286.1:p.Leu47ProfsTer22
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsp: ENSP00000441885.1:p.Gly124SerfsTer50
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8014
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8053
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly124SerfsTer50
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

12-7254619-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254619
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254619
    reference: chr 12
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.365C>T
  hgvsp: ENSP00000437398.1:p.Pro122Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.63C>T
  hgvsp: ENSP00000439180.1:p.Pro22Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.365C>T
  hgvsp: ENSP00000266542.4:p.Pro122Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.365C>T
  hgvsp: ENSP00000442611.1:p.Pro122Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.118C>T
  hgvsp: ENST00000537833.1:c.118C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.365C>T
  hgvsp: ENSP00000441885.1:p.Pro122Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.136C>T
  hgvsp: ENSP00000438286.1:p.Pro46Ser
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.416C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.114C>T
  hgvsp: ENST00000534969.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4272
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro122Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/12-7254626-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254626
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254626
    reference: chr 12
allele count: 6
allele frequency: 4.948208748433067e-5
allele num: 121256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.129G>T
  hgvsp: ENSP00000438286.1:p.Trp43Cys
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.358G>T
  hgvsp: ENSP00000437398.1:p.Gly120Cys
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.358G>T
  hgvsp: ENSP00000442611.1:p.Gly120Cys
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.409G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.111G>T
  hgvsp: ENSP00000438951.1:p.Gly38Val
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.358G>T
  hgvsp: ENSP00000266542.4:p.Gly120Cys
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.56G>T
  hgvsp: ENSP00000439180.1:p.Gly20Cys
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.358G>T
  hgvsp: ENSP00000441885.1:p.Gly120Cys
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.107G>T
  hgvsp: ENSP00000437569.1:p.Gly36Val
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly120Cys
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-7254637-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254637
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254637
    reference: chr 12
allele count: 3
allele frequency: 2.475656048852946e-5
allele num: 121180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.347G>A
  hgvsp: ENSP00000437398.1:p.Gly116Asp
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.96G>A
  hgvsp: ENST00000534969.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.347G>A
  hgvsp: ENSP00000442611.1:p.Gly116Asp
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.347G>A
  hgvsp: ENSP00000266542.4:p.Gly116Asp
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.118G>A
  hgvsp: ENSP00000438286.1:p.Ala40Thr
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.347G>A
  hgvsp: ENSP00000441885.1:p.Gly116Asp
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.100G>A
  hgvsp: ENST00000537833.1:c.100G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.398G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.45G>A
  hgvsp: ENSP00000439180.1:p.Gly16Asp
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3904
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly116Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

12-7254641-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254641
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254641
    reference: chr 12
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.394C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.96C>G
  hgvsp: ENSP00000438951.1:p.Ala33Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.41C>G
  hgvsp: ENSP00000439180.1:p.Gln15Glu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.343C>G
  hgvsp: ENSP00000437398.1:p.Gln115Glu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.343C>G
  hgvsp: ENSP00000266542.4:p.Gln115Glu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.114C>G
  hgvsp: ENSP00000438286.1:p.Ser38Arg
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.92C>G
  hgvsp: ENSP00000437569.1:p.Ala31Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.343C>G
  hgvsp: ENSP00000441885.1:p.Gln115Glu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.343C>G
  hgvsp: ENSP00000442611.1:p.Gln115Glu
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2745
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25779
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln115Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

12-7254654-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254654
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254654
    reference: chr 12
allele count: 2
allele frequency: 1.652701340340787e-5
allele num: 121014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.79G>A
  hgvsp: ENSP00000437569.1:p.Val27Ile
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.330G>A
  hgvsp: ENST00000544702.1:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.330G>A
  hgvsp: ENST00000543933.1:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.330G>A
  hgvsp: ENST00000545337.1:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.330G>A
  hgvsp: ENST00000266542.4:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.381G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.101G>A
  hgvsp: ENSP00000438286.1:p.Ser34Asn
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.83G>A
  hgvsp: ENSP00000438951.1:p.Val29Ile
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.28G>A
  hgvsp: ENST00000534950.1:c.28G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25554
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val27Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD

12-7254658-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254658
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254658
    reference: chr 12
allele count: 2
allele frequency: 1.653904040487571e-5
allele num: 120926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.79G>A
  hgvsp: ENST00000537833.1:c.79G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.24G>A
  hgvsp: ENSP00000439180.1:p.Ser9Asn
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.326G>A
  hgvsp: ENSP00000266542.4:p.Ser109Asn
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.326G>A
  hgvsp: ENSP00000437398.1:p.Ser109Asn
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.326G>A
  hgvsp: ENSP00000442611.1:p.Ser109Asn
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.326G>A
  hgvsp: ENSP00000441885.1:p.Ser109Asn
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.377G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.97G>A
  hgvsp: ENSP00000438286.1:p.Ala33Thr
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.75G>A
  hgvsp: ENST00000534969.1:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9994
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser109Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

12-7254666-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254666
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254666
    reference: chr 12
allele count: 8
allele frequency: 6.639444942402815e-5
allele num: 120492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.67G>A
  hgvsp: ENSP00000437569.1:p.Gly23Arg
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.71G>A
  hgvsp: ENSP00000438951.1:p.Gly25Arg
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.318G>A
  hgvsp: ENST00000543933.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.318G>A
  hgvsp: ENST00000545337.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.16G>A
  hgvsp: ENST00000534950.1:c.16G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.318G>A
  hgvsp: ENST00000544702.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.89G>A
  hgvsp: ENSP00000438286.1:p.Arg30Gln
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.318G>A
  hgvsp: ENST00000266542.4:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.369G>A
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 23889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7884
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly23Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-7254667-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254667
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254667
    reference: chr 12
allele count: 7
allele frequency: 5.810189412174837e-5
allele num: 120478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.15C>T
  hgvsp: ENSP00000439180.1:p.Ser6Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.66C>T
  hgvsp: ENST00000534969.1:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.88C>T
  hgvsp: ENSP00000438286.1:p.Arg30Trp
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.317C>T
  hgvsp: ENSP00000266542.4:p.Ser106Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.70C>T
  hgvsp: ENST00000537833.1:c.70C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.317C>T
  hgvsp: ENSP00000441885.1:p.Ser106Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.317C>T
  hgvsp: ENSP00000442611.1:p.Ser106Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.368C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.317C>T
  hgvsp: ENSP00000437398.1:p.Ser106Leu
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser106Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

12-7254667-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254667
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254667
    reference: chr 12
allele count: 2
allele frequency: 1.660054117764239e-5
allele num: 120478
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.317C>G
  hgvsp: ENSP00000266542.4:p.Ser106Trp
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.66C>G
  hgvsp: ENSP00000437569.1:p.Phe22Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.15C>G
  hgvsp: ENSP00000439180.1:p.Ser6Trp
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.317C>G
  hgvsp: ENSP00000437398.1:p.Ser106Trp
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.317C>G
  hgvsp: ENSP00000441885.1:p.Ser106Trp
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.317C>G
  hgvsp: ENSP00000442611.1:p.Ser106Trp
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.70C>G
  hgvsp: ENSP00000438951.1:p.Phe24Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.88C>G
  hgvsp: ENSP00000438286.1:p.Arg30Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.368C>G
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser106Trp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/12-7254669-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254669
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254669
    reference: chr 12
allele count: 11614
allele frequency: 9.645057883634793e-2
allele num: 120414
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.366T>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.315T>G
  hgvsp: ENST00000266542.4:c.315T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.86T>G
  hgvsp: ENSP00000438286.1:p.Val29Gly
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.68T>G
  hgvsp: ENSP00000438951.1:p.Phe24Val
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.315T>G
  hgvsp: ENST00000543933.1:c.315T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.64T>G
  hgvsp: ENSP00000437569.1:p.Phe22Val
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.315T>G
  hgvsp: ENST00000545337.1:c.315T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.13T>G
  hgvsp: ENST00000534950.1:c.13T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.315T>G
  hgvsp: ENST00000544702.1:c.315T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 12901
  bin: 2.75e1
  variant carriers: 334
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 4.25e1
  variant carriers: 290
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 8507
  bin: 3.25e1
  variant carriers: 396
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.75e1
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 19652
  bin: 2.25e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 3.75e1
  variant carriers: 396
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 9.75e1
  variant carriers: 8221
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.25e1
  variant carriers: 137
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 8.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe22Val
num of homozygotes: 688
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

12-7254671-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254671
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254671
    reference: chr 12
allele count: 119
allele frequency: 9.91815438982514e-4
allele num: 119982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.313G>A
  hgvsp: ENSP00000442611.1:p.Gly105Ser
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.313G>A
  hgvsp: ENSP00000266542.4:p.Gly105Ser
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.66G>A
  hgvsp: ENSP00000438951.1:p.Arg23Gln
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.84G>A
  hgvsp: ENST00000545280.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.62G>A
  hgvsp: ENSP00000437569.1:p.Arg21Gln
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.313G>A
  hgvsp: ENSP00000437398.1:p.Gly105Ser
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.364G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.11G>A
  hgvsp: ENSP00000439180.1:p.Gly5Ser
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.313G>A
  hgvsp: ENSP00000441885.1:p.Gly105Ser
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8906
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 19728
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13651
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly105Ser
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-7254674-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254674
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254674
    reference: chr 12
allele count: 15
allele frequency: 1.2531328320802e-4
allele num: 119700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.8G>A
  hgvsp: ENSP00000439180.1:p.Val4Ile
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.310G>A
  hgvsp: ENSP00000442611.1:p.Val104Ile
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.310G>A
  hgvsp: ENSP00000266542.4:p.Val104Ile
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.63G>A
  hgvsp: ENSP00000438951.1:p.Arg22His
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.310G>A
  hgvsp: ENSP00000437398.1:p.Val104Ile
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.59G>A
  hgvsp: ENSP00000437569.1:p.Arg20His
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.361G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.81G>A
  hgvsp: ENST00000545280.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.310G>A
  hgvsp: ENSP00000441885.1:p.Val104Ile
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21279
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val104Ile
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

12-7254675-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254675
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254675
    reference: chr 12
allele count: 3
allele frequency: 2.506223789076206e-5
allele num: 119702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.7C>T
  hgvsp: ENST00000534950.1:c.7C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.309C>T
  hgvsp: ENST00000266542.4:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.309C>T
  hgvsp: ENST00000543933.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.360C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.309C>T
  hgvsp: ENST00000545337.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.80C>T
  hgvsp: ENSP00000438286.1:p.Ser27Leu
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.309C>T
  hgvsp: ENST00000544702.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.62C>T
  hgvsp: ENSP00000438951.1:p.Arg22Cys
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.58C>T
  hgvsp: ENSP00000437569.1:p.Arg20Cys
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4917
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2754
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg20Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

12-7254681-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254681
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254681
    reference: chr 12
allele count: 1
allele frequency: 8.397574780403419e-6
allele num: 119082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.74C>T
  hgvsp: ENSP00000438286.1:p.Ser25Phe
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.303C>T
  hgvsp: ENST00000545337.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.354C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000439180
  ensembl transcript: ENST00000534950
  gene symbol: C1RL
  hgvsc: ENST00000534950.1:c.1C>T
  hgvsp: ENST00000534950.1:c.1C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.303C>T
  hgvsp: ENST00000543933.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.56C>T
  hgvsp: ENSP00000438951.1:p.Leu20Phe
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.303C>T
  hgvsp: ENST00000266542.4:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.52C>T
  hgvsp: ENSP00000437569.1:p.Leu18Phe
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.303C>T
  hgvsp: ENST00000544702.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6652
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu20Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum

12-7254686-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254686
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254686
    reference: chr 12
allele count: 1
allele frequency: 8.441098018030185e-6
allele num: 118468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.301-3C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.352-3C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.50-3C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.301-3C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.301-3C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.54-3C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.72-3C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.301-3C>T
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2842
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4552
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14035
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19359
  bin: 6.25e1
  variant carriers: 0
hgvs: c.301-3C>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

12-7254686-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254686
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254686
    reference: chr 12
allele count: 684
allele frequency: 5.773711044332647e-3
allele num: 118468
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.301-3C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.50-3C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.301-3C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.54-3C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.352-3C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.301-3C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.72-3C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.301-3C>G
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18127
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8587
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12829
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 502
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6509
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
hgvs: c.301-3C>G
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-7254691-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254691
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254691
    reference: chr 12
allele count: 1
allele frequency: 8.475294516484449e-6
allele num: 117990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.50-8G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.301-8G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.301-8G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.72-8G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.54-8G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.301-8G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.352-8G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.301-8G>A
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8548
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4576
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3232
  bin: 7.25e1
  variant carriers: 0
hgvs: c.301-8G>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

12-7254692-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254692
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254692
    reference: chr 12
allele count: 3
allele frequency: 2.544529262086514e-5
allele num: 117900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.301-9C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.301-9C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.72-9C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.301-9C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.54-9C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.50-9C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.352-9C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.301-9C>T
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3853
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3441
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3229
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

12-7254692-GGGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254692
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254689
    reference: chr 12
allele count: 3
allele frequency: 2.544529262086514e-5
allele num: 117900
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.352-12_352-10delTCC
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.301-12_301-10delTCC
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.301-12_301-10delTCC
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.50-12_50-10delTCC
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.54-12_54-10delTCC
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.301-12_301-10delTCC
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.72-12_72-10delTCC
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.301-12_301-10delTCC
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3853
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18614
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3441
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: GGGA
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-7254699-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254699
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254699
    reference: chr 12
allele count: 1
allele frequency: 8.526312199447495e-6
allele num: 117284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.50-16C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.301-16C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.301-16C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.352-16C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.301-16C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.54-16C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.301-16C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.72-16C>T
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3855
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3212
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

12-7254700-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254700
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254700
    reference: chr 12
allele count: 38
allele frequency: 3.24531137908653e-4
allele num: 117092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.54-17C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.352-17C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.301-17C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.72-17C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.50-17C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.301-17C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.301-17C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.301-17C>T
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11956
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16858
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6299
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4079
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

12-7254700-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254700
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254700
    reference: chr 12
allele count: 1
allele frequency: 8.540293102859289e-6
allele num: 117092
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.352-17C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.54-17C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.301-17C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.301-17C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.301-17C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.72-17C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.50-17C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.301-17C>G
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4079
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3848
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

12-7254701-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254701
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254701
    reference: chr 12
allele count: 123
allele frequency: 1.050509881625472e-3
allele num: 117086
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.301-18T>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.352-18T>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.54-18T>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.72-18T>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.301-18T>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.301-18T>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.301-18T>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.50-18T>A
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16827
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17500
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13922
  bin: 9.75e1
  variant carriers: 122
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4556
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/12-7254708-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254708
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254708
    reference: chr 12
allele count: 1
allele frequency: 8.591951060246761e-6
allele num: 116388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.301-25G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.301-25G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.50-25G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.54-25G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.72-25G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.301-25G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.301-25G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.352-25G>T
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4545
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4218
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13877
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

12-7254715-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254715
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254715
    reference: chr 12
allele count: 2
allele frequency: 1.727026233528487e-5
allele num: 115806
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.301-32A>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.301-32A>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.72-32A>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.352-32A>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.50-32A>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.301-32A>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.54-32A>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.301-32A>C
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13875
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

12-7254726-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254726
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254726
    reference: chr 12
allele count: 1
allele frequency: 8.767622922073367e-6
allele num: 114056
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.54-43A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.301-43A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.72-43A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.301-43A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.301-43A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.352-43A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.301-43A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.50-43A>G
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1929
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

12-7254732-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254732
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254732
    reference: chr 12
allele count: 5
allele frequency: 4.433488801007288e-5
allele num: 112778
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.301-49G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.301-49G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.54-49G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.301-49G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.50-49G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.301-49G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.352-49G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.72-49G>A
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2761
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15005
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

12-7254733-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254733
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254733
    reference: chr 12
allele count: 5
allele frequency: 4.443654461429079e-5
allele num: 112520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.301-50C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.50-50C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.301-50C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.301-50C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.54-50C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.301-50C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.72-50C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.352-50C>T
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8297
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14778
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6089
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4536
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13888
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-7254734-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254734
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254734
    reference: chr 12
allele count: 4
allele frequency: 3.554923569143263e-5
allele num: 112520
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.301-51G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.301-51G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.50-51G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.54-51G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.301-51G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.352-51G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.301-51G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.72-51G>A
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3831
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3187
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13883
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

12-7254735-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7254735
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7254735
    reference: chr 12
allele count: 2
allele frequency: 1.778251978305326e-5
allele num: 112470
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.301-52C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.301-52C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.72-52C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.301-52C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.352-52C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.301-52C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.54-52C>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.50-52C>T
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6077
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

12-7260804-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260804
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260804
    reference: chr 12
allele count: 2
allele frequency: 2.083376737015354e-5
allele num: 95998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+43G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+902G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+43G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+43G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+43G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+43G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.291G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+43G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+96C>T
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+43G>A
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17988
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12462
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12743
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2701
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/12-7260812-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260812
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260812
    reference: chr 12
allele count: 1
allele frequency: 1.030163177847371e-5
allele num: 97072
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+35G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.283G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+35G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+35G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+35G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+104C>A
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+35G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+894G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+35G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+35G>T
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9018
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15708
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5418
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum

12-7260815-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260815
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260814
    reference: chr 12
allele count: 1
allele frequency: 1.023876807142565e-5
allele num: 97668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+31delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+890delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.279delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+31delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+31delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+31delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+31delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+31delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+31delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+109delC
  variant of: http://identifiers.org/hgnc/27461
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8182
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: TC
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

12-7260822-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260822
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260822
    reference: chr 12
allele count: 1
allele frequency: 1.012063800501984e-5
allele num: 98808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+25C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+25C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+25C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+25C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.273C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+884C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+25C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+114G>C
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+25C>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+25C>G
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6758
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12901
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

12-7260824-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260824
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260824
    reference: chr 12
allele count: 5
allele frequency: 5.058680696074464e-5
allele num: 98840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+23C>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+23C>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.271C>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+23C>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+882C>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+23C>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+116G>T
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+23C>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+23C>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+23C>A
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13094
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20349
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8817
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-7260825-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260825
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260826
    reference: chr 12
allele count: 7130
allele frequency: 7.527926177756192e-2
allele num: 94714
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+21dupG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+21dupG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+21dupG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+21dupG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.269dupG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+21dupG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+125dupC
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+880dupG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+21dupG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+21dupG
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19209
  bin: 2.25e1
  variant carriers: 1669
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11488
  bin: 1.25e1
  variant carriers: 1227
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 1.75e1
  variant carriers: 1889
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 9452
  bin: 2.75e1
  variant carriers: 1145
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 3.25e1
  variant carriers: 574
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 2.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 7.5e0
  variant carriers: 277
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 3.75e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 9.25e1
  variant carriers: 128
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 132
genotype quality: GenotypeQuality
  all individuals: 9205
  bin: 2.25e1
  variant carriers: 33
num of homozygotes: 183
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-7260825-A-ACC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260825
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260827
    reference: chr 12
allele count: 6
allele frequency: 6.334860738644762e-5
allele num: 94714
alternate allele: ACC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+20_300+21dupGG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.268_269dupGG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+124_61+125dupCC
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+20_53+21dupGG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+20_300+21dupGG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+20_49+21dupGG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+879_71+880dupGG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+20_300+21dupGG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+20_351+21dupGG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+20_300+21dupGG
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19209
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11488
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3292
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/12-7260825-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260825
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260824
    reference: chr 12
allele count: 50
allele frequency: 5.279050615537302e-4
allele num: 94714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+21delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+21delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+21delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+21delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+21delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+21delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+880delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+21delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.269delG
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+125delC
  variant of: http://identifiers.org/hgnc/27461
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 9452
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11488
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 19209
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3906
  bin: 2.75e1
  variant carriers: 6
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: AC
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/12-7260825-ACC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260825
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260823
    reference: chr 12
allele count: 1
allele frequency: 1.05581012310746e-5
allele num: 94714
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9205
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3906
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17310
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3292
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6267
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4634
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6804
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9526
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5508
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8252
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: ACC
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/12-7260826-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260826
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260826
    reference: chr 12
allele count: 2
allele frequency: 2.483053162168202e-5
allele num: 80546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+118C>A
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+21G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+21G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+21G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.269G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+21G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+21G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+880G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+21G>T
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+21G>T
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18523
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3781
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8527
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

12-7260827-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260827
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260827
    reference: chr 12
allele count: 1
allele frequency: 1.00341159943809e-5
allele num: 99660
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+20G>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+20G>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+20G>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+20G>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+20G>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.268G>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+20G>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+119C>G
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+20G>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+879G>C
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10401
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7001
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-7260827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260827
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260827
    reference: chr 12
allele count: 1
allele frequency: 1.00341159943809e-5
allele num: 99660
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+20G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.268G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+20G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+20G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+20G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+879G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+20G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+20G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+119C>T
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+20G>A
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7001
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

12-7260829-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260829
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260829
    reference: chr 12
allele count: 1
allele frequency: 9.417259954043771e-6
allele num: 106188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.266G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+18G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+121C>T
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+18G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+18G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+18G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+877G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+18G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+18G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+18G>A
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8997
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-7260831-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260831
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260831
    reference: chr 12
allele count: 3
allele frequency: 2.807043808597039e-5
allele num: 106874
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12788
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8651
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3740
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3964
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29341
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.082251082251082e-4
  allele num: 9240
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 776
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.661792076575379e-5
  allele num: 60176
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7784
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/12-7260831-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260831
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260832
    reference: chr 12
allele count: 1
allele frequency: 9.356812695323466e-6
allele num: 106874
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+15_351+16insT
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+123_61+124insA
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+874_71+875insT
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.263_264insT
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+15_49+16insT
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+15_300+16insT
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+15_300+16insT
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+15_300+16insT
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+15_53+16insT
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+15_300+16insT
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12788
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

12-7260831-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260831
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260831
    reference: chr 12
allele count: 71
allele frequency: 6.64333701367966e-4
allele num: 106874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+16G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+16G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+16G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+16G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+16G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+16G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+123C>T
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+16G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.264G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+875G>A
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12788
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6413
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 22081
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9005
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD

12-7260832-C-CTGTGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260832
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260837
    reference: chr 12
allele count: 1
allele frequency: 9.326792143110299e-6
allele num: 107218
alternate allele: CTGTGA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+14_49+15insTCACA
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+14_300+15insTCACA
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.262_263insTCACA
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+14_351+15insTCACA
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+873_71+874insTCACA
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+124_61+125insTGTGA
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+14_53+15insTCACA
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+14_300+15insTCACA
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+14_300+15insTCACA
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+14_300+15insTCACA
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3815
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

12-7260832-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260832
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260832
    reference: chr 12
allele count: 1
allele frequency: 9.326792143110299e-6
allele num: 107218
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+15G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+124C>T
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+874G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.263G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+15G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+15G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+15G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+15G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+15G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+15G>A
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12882
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3778
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

12-7260833-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260833
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260833
    reference: chr 12
allele count: 5
allele frequency: 4.649432769202157e-5
allele num: 107540
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+14G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+14G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+14G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+14G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+873G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+14G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+14G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.262G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+125C>T
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+14G>A
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23193
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3669
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

12-7260834-A-AGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260834
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260837
    reference: chr 12
allele count: 1
allele frequency: 9.309946747104606e-6
allele num: 107412
alternate allele: AGAG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+12_300+13insCTC
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+12_300+13insCTC
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.260_261insCTC
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+12_49+13insCTC
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+12_53+13insCTC
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+12_300+13insCTC
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+126_61+127insGAG
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+12_351+13insCTC
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+871_71+872insCTC
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+12_300+13insCTC
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 5477
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5942
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

12-7260843-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260843
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260843
    reference: chr 12
allele count: 5
allele frequency: 4.4634089732374e-5
allele num: 112022
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.300+4A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.53+4A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+135T>C
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.300+4A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+863A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.49+4A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.300+4A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.351+4A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.300+4A>G
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.252A>G
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15265
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4489
  bin: 6.75e1
  variant carriers: 0
hgvs: c.300+4A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum

12-7260859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260859
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260859
    reference: chr 12
allele count: 1
allele frequency: 8.56898029134533e-6
allele num: 116700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+847G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.288G>A
  hgvsp: ENST00000543933.1:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.288G>A
  hgvsp: ENST00000266542.4:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+151C>T
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.339G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.37G>A
  hgvsp: ENSP00000437569.1:p.Gly13Arg
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.41G>A
  hgvsp: ENSP00000438951.1:p.Gly15Arg
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.236G>A
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.288G>A
  hgvsp: ENST00000545337.1:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.288G>A
  hgvsp: ENST00000544702.1:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21265
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly13Arg
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

12-7260864-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7260864
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7260864
    reference: chr 12
allele count: 3
allele frequency: 2.551107180516344e-5
allele num: 117596
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438286
  ensembl transcript: ENST00000545280
  gene symbol: C1RL
  hgvsc: ENST00000545280.1:c.71+842G>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000266542
  ensembl transcript: ENST00000266542
  gene symbol: C1RL
  hgvsc: ENST00000266542.4:c.283G>C
  hgvsp: ENSP00000266542.4:p.Ala95Pro
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000438951
  ensembl transcript: ENST00000537833
  gene symbol: C1RL
  hgvsc: ENST00000537833.1:c.36G>C
  hgvsp: ENSP00000438951.1:p.Cys13Ser
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000442611
  ensembl transcript: ENST00000545337
  gene symbol: C1RL
  hgvsc: ENST00000545337.1:c.283G>C
  hgvsp: ENSP00000442611.1:p.Ala95Pro
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437398
  ensembl transcript: ENST00000543933
  gene symbol: C1RL
  hgvsc: ENST00000543933.1:c.283G>C
  hgvsp: ENSP00000437398.1:p.Ala95Pro
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000539927
  gene symbol: C1RL
  hgvsc: ENST00000539927.1:n.231G>C
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205885
  ensembl transcript: ENST00000435921
  gene symbol: C1RL-AS1
  hgvsc: ENST00000435921.2:n.61+156C>G
  variant of: http://identifiers.org/hgnc/27461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000441885
  ensembl transcript: ENST00000544702
  gene symbol: C1RL
  hgvsc: ENST00000544702.1:c.283G>C
  hgvsp: ENSP00000441885.1:p.Ala95Pro
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139178
  ensembl protein: ENSP00000437569
  ensembl transcript: ENST00000534969
  gene symbol: C1RL
  hgvsc: ENST00000534969.1:c.32G>C
  hgvsp: ENSP00000437569.1:p.Cys11Ser
  variant of: http://identifiers.org/hgnc/21265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139178
  ensembl transcript: ENST00000543941
  gene symbol: C1RL
  hgvsc: ENST00000543941.1:n.334G>C
  variant of: http://identifiers.org/hgnc/21265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35237
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala95Pro
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4272
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3922
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7981
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5284
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011141222523336e-5
allele num: 66420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

DP
type: SiteQuality
SIO_000300: 1.705432e6

QD
type: SiteQuality
SIO_000300: 1.226e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.26e-1

GenotypeQuality
all individuals: 26156
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8041
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5303
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7982
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3935
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

DP
type: SiteQuality
SIO_000300: 1.70904e6

FS
type: SiteQuality
SIO_000300: 2.308e0

QD
type: SiteQuality
SIO_000300: 1.312e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.96e-1

GenotypeQuality
all individuals: 67
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26154
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7986
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8039
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3936
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.455425017277125e-4
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.257e1

FS
type: SiteQuality
SIO_000300: 1.123e0

DP
type: SiteQuality
SIO_000300: 1.709645e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
all individuals: 2136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3933
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26127
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8013
bin: 9.75e1
variant carriers: 31

GenotypeQuality
all individuals: 2748
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 4.499910001799964e-4
allele num: 66668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.714173e6

VQSLOD
type: SiteQuality
SIO_000300: 4.11e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.371e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3934
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8040
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5295
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.998740176375308e-5
allele num: 66676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.132e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.711545e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

QD
type: SiteQuality
SIO_000300: 1.198e1

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4272
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5295
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8031
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3932
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.834e0

VQSLOD
type: SiteQuality
SIO_000300: -3.702e-1

DP
type: SiteQuality
SIO_000300: 1.711058e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.159e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.403e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.839e0

MQRankSum
type: SiteQuality
SIO_000300: -1.114e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5295
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8028
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26097
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3927
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 27
allele frequency: 2.332814930015552e-3
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.715042e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.74e-1

FS
type: SiteQuality
SIO_000300: 5.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

QD
type: SiteQuality
SIO_000300: 1.392e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

GenotypeQuality
all individuals: 8038
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5291
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26108
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8032
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3926
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.152e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 7.252e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

DP
type: SiteQuality
SIO_000300: 1.71195e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.72e0

GenotypeQuality
all individuals: 8032
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5291
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8038
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3926
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26108
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.72e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 7.252e0

DP
type: SiteQuality
SIO_000300: 1.71195e6

QD
type: SiteQuality
SIO_000300: 1.152e1

GenotypeQuality
all individuals: 2746
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3927
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26101
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8040
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4271
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8033
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 2.0389e1

MQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

DP
type: SiteQuality
SIO_000300: 1.712114e6

QD
type: SiteQuality
SIO_000300: 1.534e1

VQSLOD
type: SiteQuality
SIO_000300: -2.782e0

GenotypeQuality
all individuals: 5291
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8042
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26082
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.81e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.95e-1

FS
type: SiteQuality
SIO_000300: 1.934e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.49e-1

DP
type: SiteQuality
SIO_000300: 1.71198e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.986e1

QD
type: SiteQuality
SIO_000300: 1.502e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

GenotypeQuality
all individuals: 2136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8046
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5290
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3923
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.998260504453708e-5
allele num: 66686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.254e1

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 1.107e0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.627e0

DP
type: SiteQuality
SIO_000300: 1.712499e6

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26081
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8034
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5288
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8049
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.346e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.35e-1

FS
type: SiteQuality
SIO_000300: 5.2e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 1.713092e6

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8034
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26081
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5288
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8049
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.35e-1

QD
type: SiteQuality
SIO_000300: 1.346e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.713092e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 5.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8034
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26081
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8049
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3920
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5288
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

QD
type: SiteQuality
SIO_000300: 1.346e1

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 1.713092e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.35e-1

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8013
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25942
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5287
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3914
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.712264e6

QD
type: SiteQuality
SIO_000300: 1.477e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.336e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

FS
type: SiteQuality
SIO_000300: 2.067e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5287
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25867
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3916
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.39e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e-1

QD
type: SiteQuality
SIO_000300: 3.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.712003e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e0

FS
type: SiteQuality
SIO_000300: 5.042e0

MQRankSum
type: SiteQuality
SIO_000300: -6.017e0

VQSLOD
type: SiteQuality
SIO_000300: -1.021e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8020
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25852
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8054
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3913
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5289
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.369e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.636e0

QD
type: SiteQuality
SIO_000300: 1.672e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-1

DP
type: SiteQuality
SIO_000300: 1.71182e6

MQRankSum
type: SiteQuality
SIO_000300: -7.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8023
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3911
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8060
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2134
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25888
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21256214380987e-4
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001380635092142e-5
allele num: 66636
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.612e0

VQSLOD
type: SiteQuality
SIO_000300: -7.746e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.712052e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.848e0

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

QD
type: SiteQuality
SIO_000300: 9.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8014
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5286
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4274
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2134
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25804
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8063
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.504639778972342e-5
allele num: 66598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

QD
type: SiteQuality
SIO_000300: 1.152e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.105e0

DP
type: SiteQuality
SIO_000300: 1.711353e6

FS
type: SiteQuality
SIO_000300: 2.492e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8010
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5287
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3897
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2134
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8065
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.994e0

MQRankSum
type: SiteQuality
SIO_000300: 8.84e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 2.217e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.141e0

DP
type: SiteQuality
SIO_000300: 1.710861e6

GenotypeQuality
all individuals: 76
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7996
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3890
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8067
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4272
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2745
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

FS
type: SiteQuality
SIO_000300: 3.075e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 1.708721e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.9e0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5273
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8068
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7966
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3885
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008423586040914e-5
allele num: 66480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.309e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

FS
type: SiteQuality
SIO_000300: 5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 1.707426e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.88e-1

GenotypeQuality
all individuals: 4275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5265
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8076
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24510
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3866
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.206199867318015e-4
allele num: 66324
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

DP
type: SiteQuality
SIO_000300: 1.702247e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.341e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

GenotypeQuality
all individuals: 7881
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8085
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3865
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5265
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24592
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.197322756569162e-5
allele num: 16136
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31696014828545e-4
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.523249502442555e-5
allele num: 66324
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 2.948e0

DP
type: SiteQuality
SIO_000300: 1.702475e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.006e0

QD
type: SiteQuality
SIO_000300: 1.121e1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

GenotypeQuality
all individuals: 24592
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5265
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3865
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8085
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7881
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.686168151879117e-5
allele num: 10324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507749834147518e-5
allele num: 66324
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.006e0

QD
type: SiteQuality
SIO_000300: 1.121e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 1.702475e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

FS
type: SiteQuality
SIO_000300: 2.948e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 124
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 146
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4290
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 870
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 17584
bin: 9.75e1
variant carriers: 10830

GenotypeQuality
all individuals: 6352
bin: 6.75e1
variant carriers: 15

GenotypeQuality
all individuals: 2256
bin: 9.25e1
variant carriers: 13

GenotypeQuality
all individuals: 3137
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 20344
bin: 6.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1751
bin: 8.75e1
variant carriers: 16

East Asian
type: Population
allele count: 1329
allele frequency: 1.542837241699559e-1
allele num: 8614
num of homozygotes: 89

African
type: Population
allele count: 1248
allele frequency: 1.209302325581395e-1
allele num: 10320
num of homozygotes: 73

South Asian
type: Population
allele count: 3000
allele frequency: 1.860580501116348e-1
allele num: 16124
num of homozygotes: 291

European (Finnish)
type: Population
allele count: 296
allele frequency: 4.476709013914096e-2
allele num: 6612
num of homozygotes: 10

European (Non-Finnish)
type: Population
allele count: 5034
allele frequency: 7.593447370802787e-2
allele num: 66294
num of homozygotes: 194

Other
type: Population
allele count: 73
allele frequency: 8.147321428571429e-2
allele num: 896
num of homozygotes: 4

Latino
type: Population
allele count: 634
allele frequency: 5.487277133460274e-2
allele num: 11554
num of homozygotes: 27

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.28e-2

FS
type: SiteQuality
SIO_000300: 6.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.97e0

DP
type: SiteQuality
SIO_000300: 2.899476e6

QD
type: SiteQuality
SIO_000300: 1.448e1

GenotypeQuality
all individuals: 6790
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4634
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3309
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13544
bin: 9.75e1
variant carriers: 118

GenotypeQuality
all individuals: 3880
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21739
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 71
allele frequency: 1.07348049591775e-3
allele num: 66140
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.944768572539868e-4
allele num: 10284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.059556786703601e-4
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 37
allele frequency: 2.330268295755133e-3
allele num: 15878
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.17e0

FS
type: SiteQuality
SIO_000300: 6.43e-1

QD
type: SiteQuality
SIO_000300: 1.199e1

DP
type: SiteQuality
SIO_000300: 1.932831e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4625
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3890
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3299
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6738
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13492
bin: 9.75e1
variant carriers: 15

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.623376623376623e-3
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 1.920259e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

FS
type: SiteQuality
SIO_000300: 1.437e0

QD
type: SiteQuality
SIO_000300: 1.07e1

VQSLOD
type: SiteQuality
SIO_000300: 2.97e0

GenotypeQuality
all individuals: 1558
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4627
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3889
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13490
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1962
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6745
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21391
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51437138443832e-5
allele num: 66034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.272102785905101e-4
allele num: 15722
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

QD
type: SiteQuality
SIO_000300: 1.355e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.918005e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.723e0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13486
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 351
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3283
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20591
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4614
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3883
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.767532721234616e-5
allele num: 10238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.695e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.905282e6

QD
type: SiteQuality
SIO_000300: 1.096e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.934e0

GenotypeQuality
all individuals: 6509
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1932
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2721
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3833
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522858100082234e-5
allele num: 65666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.950871e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.87e0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

QD
type: SiteQuality
SIO_000300: 1.524e1

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2721
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 430
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19359
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1932
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3230
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3833
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4552
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 463
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14035
bin: 9.75e1
variant carriers: 680

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2842
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 56
allele frequency: 8.469449485783424e-3
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 510
allele frequency: 7.766576310419395e-3
allele num: 65666
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.666339933346403e-3
allele num: 10202
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.409090909090909e-3
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 44
allele frequency: 3.817456186014229e-3
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 54
allele frequency: 3.608178538019511e-3
allele num: 14966
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

QD
type: SiteQuality
SIO_000300: 1.524e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 1.950871e6

VQSLOD
type: SiteQuality
SIO_000300: 5.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

GenotypeQuality
all individuals: 128
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6487
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3854
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13820
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18925
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526950679493052e-5
allele num: 65490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.914e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 4.694e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

DP
type: SiteQuality
SIO_000300: 1.895646e6

QD
type: SiteQuality
SIO_000300: 1.239e1

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4576
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6493
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13820
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 18614
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.946954813359528e-4
allele num: 10180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65466
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.890945e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-2

FS
type: SiteQuality
SIO_000300: 2.909e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

VQSLOD
type: SiteQuality
SIO_000300: 3.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.276e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.21e-1

QD
type: SiteQuality
SIO_000300: 1.568e1

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1937
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13820
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6493
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4576
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.582531390340024e-5
allele num: 65466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

FS
type: SiteQuality
SIO_000300: 2.909e0

QD
type: SiteQuality
SIO_000300: 1.568e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.941e1

DP
type: SiteQuality
SIO_000300: 1.890945e6

VQSLOD
type: SiteQuality
SIO_000300: 3.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.276e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.21e-1

GenotypeQuality
all individuals: 13817
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3975
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4568
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6327
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17889
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 4.235e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.81e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.28e-1

QD
type: SiteQuality
SIO_000300: 1.377e1

DP
type: SiteQuality
SIO_000300: 1.876859e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.88e-1

GenotypeQuality
all individuals: 17496
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3848
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13849
bin: 9.75e1
variant carriers: 38

GenotypeQuality
all individuals: 4563
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3205
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 35
allele frequency: 3.455766192733017e-3
allele num: 10128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.738525730180807e-4
allele num: 11504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533742331288344e-5
allele num: 65200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14176
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

QD
type: SiteQuality
SIO_000300: 1.409e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

DP
type: SiteQuality
SIO_000300: 1.874505e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.799e0

GenotypeQuality
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17496
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3205
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13849
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6299
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4563
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.692628650904033e-5
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

DP
type: SiteQuality
SIO_000300: 1.874505e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.799e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.409e1

VQSLOD
type: SiteQuality
SIO_000300: 5.86e0

GenotypeQuality
all individuals: 739
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3842
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3195
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1936
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6291
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.954102920723226e-4
allele num: 11504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.948667324777887e-4
allele num: 10130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 110
allele frequency: 1.687168318046566e-3
allele num: 65198
num of homozygotes: 1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.468e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

DP
type: SiteQuality
SIO_000300: 1.879899e6

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.027e0

VQSLOD
type: SiteQuality
SIO_000300: 5.92e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

GenotypeQuality
all individuals: 130
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3844
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3190
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1937
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16847
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53955106690889e-5
allele num: 64954
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.197e0

QD
type: SiteQuality
SIO_000300: 1.014e1

MQRankSum
type: SiteQuality
SIO_000300: 3.28e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.892e1

DP
type: SiteQuality
SIO_000300: 1.86569e6

GenotypeQuality
all individuals: 440
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3843
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4543
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3191
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16574
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1936
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6221
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543305142292734e-5
allele num: 64796
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.37e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.254e0

VQSLOD
type: SiteQuality
SIO_000300: -3.299e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.42e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.39e-1

DP
type: SiteQuality
SIO_000300: 1.858731e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

GenotypeQuality
all individuals: 100
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3176
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4535
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2762
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13874
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6138
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15561
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3834
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556081165193577e-5
allele num: 64264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12316
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.572e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.222e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.845741e6

QD
type: SiteQuality
SIO_000300: 1.236e1

GenotypeQuality
all individuals: 3183
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4529
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13876
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 6100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.516174402250352e-4
allele num: 8532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.748863238894718e-4
allele num: 11436
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-2

QD
type: SiteQuality
SIO_000300: 1.363e1

FS
type: SiteQuality
SIO_000300: 4.259e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e0

MQRankSum
type: SiteQuality
SIO_000300: -2.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 1.842616e6

GenotypeQuality
all individuals: 1016
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1932
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3835
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 318
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3184
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.26703851095165e-5
allele num: 63826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.793527963418924e-5
allele num: 11372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.916e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.589e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

DP
type: SiteQuality
SIO_000300: 1.842059e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.0e-3

GenotypeQuality
all individuals: 1045
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6091
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2763
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14816
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1932
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172332942555686e-4
allele num: 8530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.700573469963335e-5
allele num: 63822
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

QD
type: SiteQuality
SIO_000300: 1.315e1

MQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

DP
type: SiteQuality
SIO_000300: 1.842095e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.26e-1

FS
type: SiteQuality
SIO_000300: 1.703e0

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 784
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14697
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3844
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13886
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4533
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3187
bin: 7.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.809020436927414e-5
allele num: 11352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567742137773179e-5
allele num: 63786
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 2.594e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

QD
type: SiteQuality
SIO_000300: 1.276e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

DP
type: SiteQuality
SIO_000300: 1.842637e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.13e0

GenotypeQuality
all individuals: 5252
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7327
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11971
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6231
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1780
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1657
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3747
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.651767455448437e-5
allele num: 54768
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

VQSLOD
type: SiteQuality
SIO_000300: 2.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.83e-1

DP
type: SiteQuality
SIO_000300: 9.54536e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

QD
type: SiteQuality
SIO_000300: 1.482e1

GenotypeQuality
all individuals: 763
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1592
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13477
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5154
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16512
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2155
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6963
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.441337561256846e-4
allele num: 6938
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.362e0

DP
type: SiteQuality
SIO_000300: 9.99695e5

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 8.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.46e-1

GenotypeQuality
all individuals: 6787
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5001
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5077
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13583
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1790
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17514
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 493
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.799920803484647e-5
allele num: 55558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.002e0

VQSLOD
type: SiteQuality
SIO_000300: 6.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.298e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

QD
type: SiteQuality
SIO_000300: 7.31e0

DP
type: SiteQuality
SIO_000300: 1.019604e6

GenotypeQuality
all individuals: 263
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3908
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4673
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5883
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2564
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.395478649176668e-4
allele num: 7166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

QD
type: SiteQuality
SIO_000300: 3.329e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.065e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.086898e6

GenotypeQuality
all individuals: 595
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4620
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2616
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5745
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3811
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 21249
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8712
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.619364375461936e-4
allele num: 10824
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.359e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.062e1

DP
type: SiteQuality
SIO_000300: 1.104077e6

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

FS
type: SiteQuality
SIO_000300: 2.082e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

GenotypeQuality
all individuals: 253
bin: 8.25e1
variant carriers: 107

GenotypeQuality
all individuals: 3906
bin: 2.75e1
variant carriers: 42

GenotypeQuality
all individuals: 1692
bin: 4.75e1
variant carriers: 64

GenotypeQuality
all individuals: 420
bin: 7.75e1
variant carriers: 96

GenotypeQuality
all individuals: 1067
bin: 1.75e1
variant carriers: 34

GenotypeQuality
all individuals: 1721
bin: 7.5e0
variant carriers: 47

GenotypeQuality
all individuals: 1184
bin: 1.25e1
variant carriers: 34

GenotypeQuality
all individuals: 17310
bin: 6.25e1
variant carriers: 101

GenotypeQuality
all individuals: 1486
bin: 5.25e1
variant carriers: 62

GenotypeQuality
all individuals: 1750
bin: 4.25e1
variant carriers: 81

GenotypeQuality
all individuals: 1977
bin: 6.75e1
variant carriers: 90

GenotypeQuality
all individuals: 517
bin: 7.25e1
variant carriers: 85

GenotypeQuality
all individuals: 761
bin: 5.75e1
variant carriers: 80

GenotypeQuality
all individuals: 2837
bin: 2.5e0
variant carriers: 23

GenotypeQuality
all individuals: 6267
bin: 9.75e1
variant carriers: 6011

GenotypeQuality
all individuals: 4634
bin: 3.25e1
variant carriers: 45

GenotypeQuality
all individuals: 3292
bin: 3.75e1
variant carriers: 52

East Asian
type: Population
allele count: 174
allele frequency: 2.557319223985891e-2
allele num: 6804
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 5085
allele frequency: 9.405867337501388e-2
allele num: 54062
num of homozygotes: 136

South Asian
type: Population
allele count: 226
allele frequency: 2.290695317251165e-2
allele num: 9866
num of homozygotes: 2

African
type: Population
allele count: 350
allele frequency: 4.241396025206011e-2
allele num: 8252
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 876
allele frequency: 1.59041394335512e-1
allele num: 5508
num of homozygotes: 37

Other
type: Population
allele count: 45
allele frequency: 6.465517241379311e-2
allele num: 696
num of homozygotes: 1

Latino
type: Population
allele count: 374
allele frequency: 3.926096997690531e-2
allele num: 9526
num of homozygotes: 2

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.35e-1

FS
type: SiteQuality
SIO_000300: 1.098e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.54e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

DP
type: SiteQuality
SIO_000300: 1.167364e6

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.97e-1

GenotypeQuality
all individuals: 1067
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3906
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4634
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2837
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6267
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 9205
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1721
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 1977
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17310
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.109836853982465e-4
allele num: 54062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.098e0

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.54e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.97e-1

DP
type: SiteQuality
SIO_000300: 1.167364e6

GenotypeQuality
all individuals: 1721
bin: 7.5e0
variant carriers: 6

GenotypeQuality
all individuals: 1977
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9205
bin: 2.25e1
variant carriers: 9

GenotypeQuality
all individuals: 4634
bin: 3.25e1
variant carriers: 7

GenotypeQuality
all individuals: 3292
bin: 3.75e1
variant carriers: 6

GenotypeQuality
all individuals: 17310
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2837
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1692
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1486
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 253
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 761
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6267
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.631082062454611e-4
allele num: 5508
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 8.39806844425782e-4
allele num: 9526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.884428988938626e-4
allele num: 54062
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 7.270964614638875e-4
allele num: 8252
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 8.108655990269613e-4
allele num: 9866
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 7.348618459729571e-4
allele num: 6804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

DP
type: SiteQuality
SIO_000300: 1.167364e6

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.35e-1

FS
type: SiteQuality
SIO_000300: 1.098e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.54e-2

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.849728089970774e-5
allele num: 54062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

FS
type: SiteQuality
SIO_000300: 1.098e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.54e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.167364e6

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15854
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4475
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1790
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8763
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1713
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1846
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1987
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.543595801717479e-5
allele num: 44018
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7474
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.51e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.818e0

DP
type: SiteQuality
SIO_000300: 1.202965e6

QD
type: SiteQuality
SIO_000300: 1.405e1

MQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

VQSLOD
type: SiteQuality
SIO_000300: -1.006e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 76
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2411
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 216
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2905
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3812
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4902
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4058
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9230
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21194
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.373828271466067e-5
allele num: 10668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7172
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.745e0

MQRankSum
type: SiteQuality
SIO_000300: 6.37e-1

QD
type: SiteQuality
SIO_000300: 5.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.245e0

DP
type: SiteQuality
SIO_000300: 1.187038e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.756e0

GenotypeQuality
all individuals: 76
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21194
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4058
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9230
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3812
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4902
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2411
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2905
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.373828271466067e-5
allele num: 10668
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.245e0

MQRankSum
type: SiteQuality
SIO_000300: 6.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.756e0

VQSLOD
type: SiteQuality
SIO_000300: -1.745e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

DP
type: SiteQuality
SIO_000300: 1.187038e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.62e-1

QD
type: SiteQuality
SIO_000300: 5.97e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2135
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3715
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3455
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 316
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1672
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3442
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27274
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4272
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.671011296036361e-5
allele num: 59844
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.200415e6

QD
type: SiteQuality
SIO_000300: 1.464e1

FS
type: SiteQuality
SIO_000300: 2.527e0

MQRankSum
type: SiteQuality
SIO_000300: -3.599e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQ
type: SiteQuality
SIO_000300: 4.872e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.823e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.821e0

Latino
type: Population
allele count: 1
allele frequency: 9.354536950420954e-5
allele num: 10690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12176
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.13e-2

QD
type: SiteQuality
SIO_000300: 1.427e1

DP
type: SiteQuality
SIO_000300: 1.21565e6

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 379
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 633
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3964
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3740
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29341
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9240
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.21287779237845e-5
allele num: 12176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10690
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.68e-1

DP
type: SiteQuality
SIO_000300: 1.21565e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.13e-2

QD
type: SiteQuality
SIO_000300: 1.427e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 633
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3209
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3740
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8651
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 682
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 362
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 9.75e1
variant carriers: 72

GenotypeQuality
all individuals: 29341
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3192
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3964
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 62
allele frequency: 1.030311087476735e-3
allele num: 60176
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 5.154639175257732e-3
allele num: 776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.64257555847569e-4
allele num: 12176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9240
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.806361085126286e-4
allele num: 10690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.13e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

DP
type: SiteQuality
SIO_000300: 1.21565e6

MQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.427e1

GenotypeQuality
all individuals: 3778
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3113
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3127
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29852
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8458
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.657220509761029e-5
allele num: 60342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6054
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.577e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 4.262e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

QD
type: SiteQuality
SIO_000300: 1.574e1

DP
type: SiteQuality
SIO_000300: 1.221543e6

MQ
type: SiteQuality
SIO_000300: 5.914e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeQuality
all individuals: 8458
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29852
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3113
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3127
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3815
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7814
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.168599901976801e-5
allele num: 12242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.262e0

MQRankSum
type: SiteQuality
SIO_000300: -1.577e0

DP
type: SiteQuality
SIO_000300: 1.221543e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.47e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

QD
type: SiteQuality
SIO_000300: 1.574e1

GenotypeQuality
all individuals: 261
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2982
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31099
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3003
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3791
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6058
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12284
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.300150505267684e-4
allele num: 9302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.653001851362074e-5
allele num: 60496
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

QD
type: SiteQuality
SIO_000300: 1.336e1

DP
type: SiteQuality
SIO_000300: 1.23055e6

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

GenotypeQuality
all individuals: 295
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1605
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3466
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7919
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31671
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3720
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2831
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.657550140891762e-5
allele num: 60330
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.387e1

FS
type: SiteQuality
SIO_000300: 2.35e0

MQRankSum
type: SiteQuality
SIO_000300: -3.715e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

MQ
type: SiteQuality
SIO_000300: 4.789e1

DP
type: SiteQuality
SIO_000300: 1.239507e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.674e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
all individuals: 284
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 708
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5642
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41008
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.980845969672785e-5
allele num: 62650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.321504e6

VQSLOD
type: SiteQuality
SIO_000300: 3.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.1e1

MQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48094
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2578
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5075
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544974198930878e-5
allele num: 64726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.773e1

DP
type: SiteQuality
SIO_000300: 1.411981e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.134e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.852e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 2.75e1
variant carriers: 0