11-119058258-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058258
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058258
    reference: chr 11
allele count: 1
allele frequency: 1.537042729787888e-5
allele num: 65060
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.617-15T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.331-15T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.544-15T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.521-15T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.719-15T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.541-15T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.854-15T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.521-15T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.482-15T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.250-15T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.719-15T>C
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

11-119058263-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058263
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058263
    reference: chr 11
allele count: 4
allele frequency: 6.776904310111141e-5
allele num: 59024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.719-10T>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.521-10T>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.250-10T>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.331-10T>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.521-10T>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.854-10T>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.541-10T>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.617-10T>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.544-10T>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.482-10T>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.719-10T>A
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16851
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24491
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

11-119058272-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058272
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058272
    reference: chr 11
allele count: 3
allele frequency: 5.683325124085932e-5
allele num: 52786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.250-1G>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.719-1G>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.482-1G>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.719-1G>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.521-1G>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.854-1G>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.331-1G>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.521-1G>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.617-1G>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.541-1G>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.544-1G>T
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27772
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14054
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
hgvs: c.521-1G>T
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

11-119058280-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058280
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058280
    reference: chr 11
allele count: 1
allele frequency: 2.004088340214037e-5
allele num: 49898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.489G>A
  hgvsp: ENST00000525131.1:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.861G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.528G>A
  hgvsp: ENST00000355547.5:c.528G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.726G>A
  hgvsp: ENST00000392817.2:c.726G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.528G>A
  hgvsp: ENST00000322712.4:c.528G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.548G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.338G>A
  hgvsp: ENSP00000434264.1:p.Arg113Lys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.257G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.726G>A
  hgvsp: ENST00000531114.1:c.726G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.624G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.551G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28714
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg113Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

11-119058289-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058289
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058288
    reference: chr 11
allele count: 1
allele frequency: 2.17429118107497e-5
allele num: 45992
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.871delT
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.558delT
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.561delT
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.736delT
  hgvsp: ENSP00000376564.2:p.Trp246GlyfsTer4
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.538delT
  hgvsp: ENSP00000327107.4:p.Trp180GlyfsTer4
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.267delT
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.348delT
  hgvsp: ENSP00000434264.1:p.Gly117ValfsTer10
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.538delT
  hgvsp: ENSP00000347742.5:p.Trp180GlyfsTer4
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.499delT
  hgvsp: ENSP00000434559.1:p.Trp167GlyfsTer4
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.634delT
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.736delT
  hgvsp: ENSP00000431164.1:p.Trp246GlyfsTer4
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7939
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp180GlyfsTer4
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CT
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

11-119058292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058292
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058292
    reference: chr 11
allele count: 1
allele frequency: 2.196836555360281e-5
allele num: 45520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.636G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.560G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.738G>A
  hgvsp: ENSP00000376564.2:p.Trp246Ter
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.540G>A
  hgvsp: ENSP00000327107.4:p.Trp180Ter
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.540G>A
  hgvsp: ENSP00000347742.5:p.Trp180Ter
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.501G>A
  hgvsp: ENSP00000434559.1:p.Trp167Ter
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.350G>A
  hgvsp: ENSP00000434264.1:p.Gly117Asp
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.738G>A
  hgvsp: ENSP00000431164.1:p.Trp246Ter
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.269G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.563G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.873G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29289
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3684
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp180Ter
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-119058307-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058307
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058307
    reference: chr 11
allele count: 1
allele frequency: 2.357267455565508e-5
allele num: 42422
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.555T>G
  hgvsp: ENST00000355547.5:c.555T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.753T>G
  hgvsp: ENST00000392817.2:c.753T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*5T>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.578T>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.651T>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.516T>G
  hgvsp: ENST00000525131.1:c.516T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.555T>G
  hgvsp: ENST00000322712.4:c.555T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.753T>G
  hgvsp: ENST00000531114.1:c.753T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.888T>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.284T>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.575T>G
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10296
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr185Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

11-119058310-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058310
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058310
    reference: chr 11
allele count: 1
allele frequency: 2.390057361376673e-5
allele num: 41840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.654A>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.287A>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.756A>T
  hgvsp: ENST00000392817.2:c.756A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.558A>T
  hgvsp: ENST00000322712.4:c.558A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.756A>T
  hgvsp: ENST00000531114.1:c.756A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.581A>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.578A>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.558A>T
  hgvsp: ENST00000355547.5:c.558A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.519A>T
  hgvsp: ENST00000525131.1:c.519A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*8A>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.891A>T
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10091
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10920
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly186Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/11-119058323-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058323
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058323
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 37958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.300C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.571C>A
  hgvsp: ENST00000355547.5:c.571C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.591C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.667C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.571C>A
  hgvsp: ENST00000322712.4:c.571C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.769C>A
  hgvsp: ENST00000531114.1:c.769C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.594C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.769C>A
  hgvsp: ENST00000392817.2:c.769C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*21C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.532C>A
  hgvsp: ENST00000525131.1:c.532C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.904C>A
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26937
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13680
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg191Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS

11-119058323-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058323
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058323
    reference: chr 11
allele count: 3
allele frequency: 7.903472258812371e-5
allele num: 37958
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.571C>T
  hgvsp: ENSP00000347742.5:p.Arg191Trp
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.769C>T
  hgvsp: ENSP00000376564.2:p.Arg257Trp
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.594C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*21C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.667C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.591C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.300C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.769C>T
  hgvsp: ENSP00000431164.1:p.Arg257Trp
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.904C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.532C>T
  hgvsp: ENSP00000434559.1:p.Arg178Trp
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.571C>T
  hgvsp: ENSP00000327107.4:p.Arg191Trp
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9000
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13680
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg191Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

11-119058327-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058327
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058327
    reference: chr 11
allele count: 2
allele frequency: 5.387931034482759e-5
allele num: 37120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.536C>T
  hgvsp: ENSP00000434559.1:p.Ala179Val
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.671C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.773C>T
  hgvsp: ENSP00000431164.1:p.Ala258Val
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.773C>T
  hgvsp: ENSP00000376564.2:p.Ala258Val
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.304C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.575C>T
  hgvsp: ENSP00000327107.4:p.Ala192Val
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.908C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.595C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.575C>T
  hgvsp: ENSP00000347742.5:p.Ala192Val
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*25C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.598C>T
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14862
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala192Val
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/11-119058337-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058337
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058337
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 31714
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.585C>A
  hgvsp: ENST00000355547.5:c.585C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.314C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.783C>A
  hgvsp: ENST00000531114.1:c.783C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*35C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.546C>A
  hgvsp: ENST00000525131.1:c.546C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.918C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.783C>A
  hgvsp: ENST00000392817.2:c.783C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.681C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.585C>A
  hgvsp: ENST00000322712.4:c.585C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.605C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.608C>A
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22288
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro195Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD

11-119058340-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058340
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058340
    reference: chr 11
allele count: 4
allele frequency: 1.384178835905599e-4
allele num: 28898
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*38C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.786C>T
  hgvsp: ENST00000531114.1:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.317C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.786C>T
  hgvsp: ENST00000392817.2:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.684C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.588C>T
  hgvsp: ENST00000322712.4:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.611C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.921C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.549C>T
  hgvsp: ENST00000525131.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.588C>T
  hgvsp: ENST00000355547.5:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.608C>T
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21455
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro196Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD

11-119058341-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058341
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058341
    reference: chr 11
allele count: 13
allele frequency: 4.476892347957848e-4
allele num: 29038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.550G>A
  hgvsp: ENSP00000434559.1:p.Gly184Arg
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.787G>A
  hgvsp: ENSP00000376564.2:p.Gly263Arg
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*39G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.922G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.685G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.589G>A
  hgvsp: ENSP00000347742.5:p.Gly197Arg
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.318G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.589G>A
  hgvsp: ENSP00000327107.4:p.Gly197Arg
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.787G>A
  hgvsp: ENSP00000431164.1:p.Gly263Arg
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.612G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.609G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22444
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21524
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly197Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

11-119058344-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058344
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058344
    reference: chr 11
allele count: 1
allele frequency: 3.73134328358209e-5
allele num: 26800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.592G>A
  hgvsp: ENSP00000327107.4:p.Ala198Thr
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.592G>A
  hgvsp: ENSP00000347742.5:p.Ala198Thr
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.790G>A
  hgvsp: ENSP00000431164.1:p.Ala264Thr
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.612G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.321G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.790G>A
  hgvsp: ENSP00000376564.2:p.Ala264Thr
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.553G>A
  hgvsp: ENSP00000434559.1:p.Ala185Thr
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.925G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.615G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*42G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.688G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20938
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24069
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala198Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

11-119058347-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058347
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058347
    reference: chr 11
allele count: 1
allele frequency: 3.99872040946897e-5
allele num: 25008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.793C>T
  hgvsp: ENSP00000376564.2:p.Arg265Trp
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.556C>T
  hgvsp: ENSP00000434559.1:p.Arg186Trp
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.595C>T
  hgvsp: ENSP00000347742.5:p.Arg199Trp
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.793C>T
  hgvsp: ENSP00000431164.1:p.Arg265Trp
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.595C>T
  hgvsp: ENSP00000327107.4:p.Arg199Trp
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.691C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*45C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.928C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.324C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.618C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.615C>T
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg199Trp
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum

11-119058348-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058348
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058348
    reference: chr 11
allele count: 4
allele frequency: 1.619695497246518e-4
allele num: 24696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.794G>A
  hgvsp: ENSP00000376564.2:p.Arg265Gln
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.596G>A
  hgvsp: ENSP00000327107.4:p.Arg199Gln
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*46G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.929G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.619G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.794G>A
  hgvsp: ENSP00000431164.1:p.Arg265Gln
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.596G>A
  hgvsp: ENSP00000347742.5:p.Arg199Gln
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.692G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.325G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.557G>A
  hgvsp: ENSP00000434559.1:p.Arg186Gln
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.616G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25814
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20102
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg199Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

11-119058354-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058354
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058354
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 21972
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.698T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.935T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.622T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.331T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*52T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.602T>C
  hgvsp: ENSP00000327107.4:p.Leu201Pro
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.800T>C
  hgvsp: ENSP00000431164.1:p.Leu267Pro
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.800T>C
  hgvsp: ENSP00000376564.2:p.Leu267Pro
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.563T>C
  hgvsp: ENSP00000434559.1:p.Leu188Pro
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.602T>C
  hgvsp: ENSP00000347742.5:p.Leu201Pro
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.625T>C
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28913
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17844
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu201Pro
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

11-119058356-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058356
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058356
    reference: chr 11
allele count: 15
allele frequency: 6.859965242842769e-4
allele num: 21866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*54G>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.604G>T
  hgvsp: ENSP00000347742.5:p.Glu202Ter
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.802G>T
  hgvsp: ENSP00000376564.2:p.Glu268Ter
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.333G>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.565G>T
  hgvsp: ENSP00000434559.1:p.Glu189Ter
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527951
  gene symbol: PDZD3
  hgvsc: ENST00000527951.1:n.627G>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.937G>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.802G>T
  hgvsp: ENSP00000431164.1:p.Glu268Ter
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.604G>T
  hgvsp: ENSP00000327107.4:p.Glu202Ter
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.624G>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.700G>T
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17829
  bin: 7.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29041
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu202Ter
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

11-119058383-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058383
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058383
    reference: chr 11
allele count: 2
allele frequency: 1.200048001920077e-4
allele num: 16666
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.829T>C
  hgvsp: ENSP00000431164.1:p.Phe277Leu
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.727T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.651T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.615+16T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.829T>C
  hgvsp: ENSP00000376564.2:p.Phe277Leu
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*81T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.592T>C
  hgvsp: ENSP00000434559.1:p.Phe198Leu
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.631T>C
  hgvsp: ENSP00000347742.5:p.Phe211Leu
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.360T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.964T>C
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9494
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe211Leu
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

11-119058416-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058416
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058416
    reference: chr 11
allele count: 20
allele frequency: 1.685487948761166e-3
allele num: 11866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.684C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.615+49C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.753+7C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.855+7C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.618+7C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*107+7C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.990+7C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.855+7C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.386+7C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.657+7C>T
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29544
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3578
  bin: 2.25e1
  variant carriers: 1
hgvs: c.657+7C>T
num of homozygotes: 2
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

11-119058441-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058441
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058441
    reference: chr 11
allele count: 18
allele frequency: 1.797842588893328e-3
allele num: 10012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.615+74C>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.386+32C>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.855+32C>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.709C>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.753+32C>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*107+32C>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.855+32C>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.990+32C>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.618+32C>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.657+32C>G
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24750
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

11-119058441-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058441
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058441
    reference: chr 11
allele count: 5
allele frequency: 4.994007191370355e-4
allele num: 10012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.855+32C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.709C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.855+32C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.615+74C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.657+32C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.753+32C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.386+32C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*107+32C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.990+32C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.618+32C>T
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24750
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18062
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

11-119058443-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058443
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058443
    reference: chr 11
allele count: 2
allele frequency: 2.00924251557163e-4
allele num: 9954
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.615+76A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.618+34A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.855+34A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.711A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.855+34A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.657+34A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.990+34A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*107+34A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.386+34A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.753+34A>G
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24742
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

11-119058443-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058443
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058443
    reference: chr 11
allele count: 2
allele frequency: 2.00924251557163e-4
allele num: 9954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.615+76A>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.855+34A>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.990+34A>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.753+34A>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.657+34A>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.618+34A>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*107+34A>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.386+34A>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.855+34A>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.711A>T
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24742
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

11-119058447-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058447
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058447
    reference: chr 11
allele count: 1
allele frequency: 1.021450459652707e-4
allele num: 9790
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.657+38G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.855+38G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.753+38G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.386+38G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.855+38G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*107+38G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.615+80G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.715G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.990+38G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.618+38G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24498
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16982
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

11-119058452-T-TGGGCCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058452
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058458
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 9722
alternate allele: TGGGCCC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.753+44_753+49dupGGGCCC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.990+44_990+49dupGGGCCC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.721_726dupGGGCCC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.615+86_615+91dupGGGCCC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.855+44_855+49dupGGGCCC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.618+44_618+49dupGGGCCC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*107+44_*107+49dupGGGCCC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.386+44_386+49dupGGGCCC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.657+44_657+49dupGGGCCC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.855+44_855+49dupGGGCCC
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24539
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

11-119058598-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058598
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058598
    reference: chr 11
allele count: 1
allele frequency: 9.067827348567283e-5
allele num: 11028
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.991-51T>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.616-51T>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.856-51T>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.387-51T>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.754-51T>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.866T>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.856-51T>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.619-51T>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.658-51T>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*108-51T>G
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36996
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

11-119058607-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058607
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058607
    reference: chr 11
allele count: 1
allele frequency: 9.026900162484202e-5
allele num: 11078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*108-42C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.875C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.754-42C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.658-42C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.387-42C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.619-42C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.856-42C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.856-42C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.616-42C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.991-42C>T
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37003
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/11-119058611-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058611
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058611
    reference: chr 11
allele count: 1
allele frequency: 8.911067545891998e-5
allele num: 11222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.619-38C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.991-38C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.387-38C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.856-38C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.616-38C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.658-38C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.879C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.754-38C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.856-38C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*108-38C>A
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36920
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6620
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum

11-119058626-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058626
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058626
    reference: chr 11
allele count: 1
allele frequency: 8.18464560484531e-5
allele num: 12218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.856-23G>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*108-23G>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.991-23G>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.658-23G>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.619-23G>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.616-23G>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.856-23G>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.894G>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.387-23G>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.754-23G>C
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14979
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30636
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

11-119058628-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058628
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058628
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 12376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.619-21T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*108-21T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.387-21T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.754-21T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.991-21T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.856-21T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.856-21T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.896T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.616-21T>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.658-21T>C
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33774
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

11-119058631-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058631
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058631
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 12764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*108-18C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.387-18C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.856-18C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.899C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.619-18C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.754-18C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.658-18C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.856-18C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.991-18C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.616-18C>T
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17052
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32693
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD

11-119058632-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058632
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058632
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 12918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.900C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.991-17C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.856-17C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.754-17C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.616-17C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.619-17C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.658-17C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.387-17C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*108-17C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.856-17C>T
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 17641
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS

11-119058645-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058645
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058645
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 15968
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.658-4A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*108-4A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.387-4A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.991-4A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.619-4A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.856-4A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.856-4A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.754-4A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.616-4A>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.913A>G
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 24535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25839
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23508
  bin: 7.5e0
  variant carriers: 0
hgvs: c.658-4A>G
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/11-119058667-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058667
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058667
    reference: chr 11
allele count: 90
allele frequency: 4.037322806387942e-3
allele num: 22292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.634C>A
  hgvsp: ENSP00000327107.4:p.Gln212Lys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.637C>A
  hgvsp: ENSP00000434559.1:p.Gln213Lys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.676C>A
  hgvsp: ENSP00000347742.5:p.Gln226Lys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.935C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.405C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.874C>A
  hgvsp: ENSP00000431164.1:p.Gln292Lys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.874C>A
  hgvsp: ENSP00000376564.2:p.Gln292Lys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*126C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1009C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.772C>A
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 2.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 30155
  bin: 7.5e0
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 17871
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Gln226Lys
num of homozygotes: 2
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

11-119058667-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058667
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058667
    reference: chr 11
allele count: 1
allele frequency: 4.485914229319936e-5
allele num: 22292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.637C>G
  hgvsp: ENSP00000434559.1:p.Gln213Glu
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.676C>G
  hgvsp: ENSP00000347742.5:p.Gln226Glu
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.772C>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.634C>G
  hgvsp: ENSP00000327107.4:p.Gln212Glu
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.935C>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1009C>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.874C>G
  hgvsp: ENSP00000376564.2:p.Gln292Glu
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.405C>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*126C>G
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.874C>G
  hgvsp: ENSP00000431164.1:p.Gln292Glu
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17871
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln226Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

11-119058670-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058670
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058670
    reference: chr 11
allele count: 1
allele frequency: 4.304778303917348e-5
allele num: 23230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.775G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.938G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.877G>A
  hgvsp: ENSP00000376564.2:p.Val293Met
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.877G>A
  hgvsp: ENSP00000431164.1:p.Val293Met
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.637G>A
  hgvsp: ENSP00000327107.4:p.Val213Met
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.679G>A
  hgvsp: ENSP00000347742.5:p.Val227Met
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1012G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.640G>A
  hgvsp: ENSP00000434559.1:p.Val214Met
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.408G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*129G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val227Met
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/11-119058673-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058673
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058673
    reference: chr 11
allele count: 1
allele frequency: 4.191817572099262e-5
allele num: 23856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.643A>C
  hgvsp: ENSP00000434559.1:p.Thr215Pro
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1015A>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.880A>C
  hgvsp: ENSP00000431164.1:p.Thr294Pro
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.880A>C
  hgvsp: ENSP00000376564.2:p.Thr294Pro
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*132A>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.682A>C
  hgvsp: ENSP00000347742.5:p.Thr228Pro
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.411A>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.941A>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.640A>C
  hgvsp: ENSP00000327107.4:p.Thr214Pro
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.778A>C
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16872
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr228Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

11-119058696-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058696
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058696
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 26264
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.705G>A
  hgvsp: ENST00000355547.5:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.964G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1038G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.903G>A
  hgvsp: ENST00000531114.1:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*155G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.434G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.903G>A
  hgvsp: ENST00000392817.2:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.801G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.663G>A
  hgvsp: ENST00000322712.4:c.663G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.666G>A
  hgvsp: ENST00000525131.1:c.666G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 27466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18525
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu235Glu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

11-119058712-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058712
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058712
    reference: chr 11
allele count: 75
allele frequency: 2.962787390376866e-3
allele num: 25314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.682C>T
  hgvsp: ENSP00000434559.1:p.Arg228Cys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.721C>T
  hgvsp: ENSP00000347742.5:p.Arg241Cys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.919C>T
  hgvsp: ENSP00000376564.2:p.Arg307Cys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.919C>T
  hgvsp: ENSP00000431164.1:p.Arg307Cys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*171C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.980C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.679C>T
  hgvsp: ENSP00000327107.4:p.Arg227Cys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.817C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1054C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.450C>T
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22230
  bin: 7.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 5149
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23270
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 1.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 4
hgvs: p.Arg241Cys
num of homozygotes: 2
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

11-119058713-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058713
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058713
    reference: chr 11
allele count: 21
allele frequency: 8.364534374253167e-4
allele num: 25106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.981G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1055G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*172G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.920G>A
  hgvsp: ENSP00000431164.1:p.Arg307His
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.722G>A
  hgvsp: ENSP00000347742.5:p.Arg241His
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.683G>A
  hgvsp: ENSP00000434559.1:p.Arg228His
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.451G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.920G>A
  hgvsp: ENSP00000376564.2:p.Arg307His
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.818G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.680G>A
  hgvsp: ENSP00000327107.4:p.Arg227His
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23735
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21700
  bin: 7.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg241His
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

11-119058728-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058728
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058728
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 23352
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.737C>T
  hgvsp: ENSP00000347742.5:p.Pro246Leu
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.935C>T
  hgvsp: ENSP00000431164.1:p.Pro312Leu
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.935C>T
  hgvsp: ENSP00000376564.2:p.Pro312Leu
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.833C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.996C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.466C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.695C>T
  hgvsp: ENSP00000327107.4:p.Pro232Leu
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.698C>T
  hgvsp: ENSP00000434559.1:p.Pro233Leu
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*187C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1070C>T
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16584
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28754
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Pro246Leu
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

11-119058732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058732
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058732
    reference: chr 11
allele count: 1
allele frequency: 4.355400696864111e-5
allele num: 22960
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.741G>A
  hgvsp: ENST00000355547.5:c.741G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.702G>A
  hgvsp: ENST00000525131.1:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*191G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1074G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.699G>A
  hgvsp: ENST00000322712.4:c.699G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.939G>A
  hgvsp: ENST00000531114.1:c.939G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.939G>A
  hgvsp: ENST00000392817.2:c.939G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.470G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.837G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1000G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29744
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu247Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

11-119058733-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058733
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058734
    reference: chr 11
allele count: 1
allele frequency: 4.37636761487965e-5
allele num: 22850
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.941dupC
  hgvsp: ENSP00000431164.1:p.Ala315CysfsTer36
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434264
  ensembl transcript: ENST00000533688
  gene symbol: PDZD3
  hgvsc: ENST00000533688.1:c.*193dupC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.704dupC
  hgvsp: ENSP00000434559.1:p.Ala236CysfsTer36
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.743dupC
  hgvsp: ENSP00000347742.5:p.Ala249CysfsTer36
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.701dupC
  hgvsp: ENSP00000327107.4:p.Ala235CysfsTer36
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.941dupC
  hgvsp: ENSP00000376564.2:p.Ala315CysfsTer36
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.839dupC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.472dupC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1002dupC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1076dupC
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29990
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala249CysfsTer36
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

11-119058742-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058742
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058741
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 21684
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.710delT
  hgvsp: ENSP00000327107.4:p.Leu237ArgfsTer180
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.481delT
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.713delT
  hgvsp: ENSP00000434559.1:p.Leu238ArgfsTer180
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.752delT
  hgvsp: ENSP00000347742.5:p.Leu251ArgfsTer180
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.950delT
  hgvsp: ENSP00000376564.2:p.Leu317ArgfsTer180
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1085delT
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1011delT
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.950delT
  hgvsp: ENSP00000431164.1:p.Leu317ArgfsTer180
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.848delT
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32012
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12808
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10152
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu251ArgfsTer180
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: CT
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

11-119058744-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058744
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058744
    reference: chr 11
allele count: 1
allele frequency: 4.648136097424932e-5
allele num: 21514
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.753G>A
  hgvsp: ENST00000355547.5:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.951G>A
  hgvsp: ENST00000392817.2:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.714G>A
  hgvsp: ENST00000525131.1:c.714G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1086G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.482G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.711G>A
  hgvsp: ENST00000322712.4:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.951G>A
  hgvsp: ENST00000531114.1:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1012G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.849G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9849
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31157
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu251Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

11-119058756-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058756
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058756
    reference: chr 11
allele count: 1
allele frequency: 4.87044613286577e-5
allele num: 20532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1024G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1098G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.765G>A
  hgvsp: ENSP00000347742.5:p.Trp255Ter
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.723G>A
  hgvsp: ENSP00000327107.4:p.Trp241Ter
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.861G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.494G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.963G>A
  hgvsp: ENSP00000431164.1:p.Trp321Ter
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.726G>A
  hgvsp: ENSP00000434559.1:p.Trp242Ter
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.963G>A
  hgvsp: ENSP00000376564.2:p.Trp321Ter
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34049
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Trp255Ter
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

11-119058772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058772
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058772
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 19580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1040C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.781C>T
  hgvsp: ENSP00000347742.5:p.Pro261Ser
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.979C>T
  hgvsp: ENSP00000376564.2:p.Pro327Ser
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.979C>T
  hgvsp: ENSP00000431164.1:p.Pro327Ser
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.739C>T
  hgvsp: ENSP00000327107.4:p.Pro247Ser
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.877C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.510C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.742C>T
  hgvsp: ENSP00000434559.1:p.Pro248Ser
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1114C>T
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34812
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7085
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2876
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5238
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro261Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

11-119058775-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058775
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058775
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 19454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.982C>T
  hgvsp: ENSP00000376564.2:p.Arg328Cys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.742C>T
  hgvsp: ENSP00000327107.4:p.Arg248Cys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1043C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.982C>T
  hgvsp: ENSP00000431164.1:p.Arg328Cys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.784C>T
  hgvsp: ENSP00000347742.5:p.Arg262Cys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.513C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.880C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1117C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.745C>T
  hgvsp: ENSP00000434559.1:p.Arg249Cys
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34834
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6668
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg262Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

11-119058776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058776
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058776
    reference: chr 11
allele count: 1
allele frequency: 5.141388174807198e-5
allele num: 19450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.746G>A
  hgvsp: ENSP00000434559.1:p.Arg249His
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.743G>A
  hgvsp: ENSP00000327107.4:p.Arg248His
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.785G>A
  hgvsp: ENSP00000347742.5:p.Arg262His
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.983G>A
  hgvsp: ENSP00000376564.2:p.Arg328His
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1118G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.983G>A
  hgvsp: ENSP00000431164.1:p.Arg328His
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.514G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.881G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1044G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34854
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4982
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6412
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg262His
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

11-119058790-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058790
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058790
    reference: chr 11
allele count: 1
allele frequency: 5.275931201857128e-5
allele num: 18954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.757G>A
  hgvsp: ENSP00000327107.4:p.Glu253Lys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.997G>A
  hgvsp: ENSP00000376564.2:p.Glu333Lys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1132G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.997G>A
  hgvsp: ENSP00000431164.1:p.Glu333Lys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.799G>A
  hgvsp: ENSP00000347742.5:p.Glu267Lys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1058G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.760G>A
  hgvsp: ENSP00000434559.1:p.Glu254Lys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.528G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.895G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31414
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu267Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

11-119058805-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058805
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058805
    reference: chr 11
allele count: 1
allele frequency: 5.433010974682169e-5
allele num: 18406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.1012G>A
  hgvsp: ENSP00000376564.2:p.Gly338Ser
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1147G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.775G>A
  hgvsp: ENSP00000434559.1:p.Gly259Ser
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.543G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.814G>A
  hgvsp: ENSP00000347742.5:p.Gly272Ser
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1073G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.910G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.772G>A
  hgvsp: ENSP00000327107.4:p.Gly258Ser
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.1012G>A
  hgvsp: ENSP00000431164.1:p.Gly338Ser
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33838
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30242
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3786
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly272Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

11-119058824-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058824
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058824
    reference: chr 11
allele count: 1
allele frequency: 6.027727546714889e-5
allele num: 16590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.929G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.562G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.833G>A
  hgvsp: ENSP00000347742.5:p.Arg278Gln
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.1031G>A
  hgvsp: ENSP00000376564.2:p.Arg344Gln
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.794G>A
  hgvsp: ENSP00000434559.1:p.Arg265Gln
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.791G>A
  hgvsp: ENSP00000327107.4:p.Arg264Gln
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.1031G>A
  hgvsp: ENSP00000431164.1:p.Arg344Gln
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1166G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1092G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4969
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg278Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

11-119058835-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058835
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058835
    reference: chr 11
allele count: 24
allele frequency: 1.571297629959408e-3
allele num: 15274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1177G>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.844G>C
  hgvsp: ENSP00000347742.5:p.Gly282Arg
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.1042G>C
  hgvsp: ENSP00000431164.1:p.Gly348Arg
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.1042G>C
  hgvsp: ENSP00000376564.2:p.Gly348Arg
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.573G>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.940G>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.802G>C
  hgvsp: ENSP00000327107.4:p.Gly268Arg
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1103G>C
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.805G>C
  hgvsp: ENSP00000434559.1:p.Gly269Arg
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33906
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5507
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly282Arg
num of homozygotes: 2
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-119058842-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058842
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058841
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 14136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.810delC
  hgvsp: ENSP00000327107.4:p.Asp270GlufsTer147
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1185delC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.1050delC
  hgvsp: ENSP00000431164.1:p.Asp350GlufsTer147
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.948delC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.581delC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.813delC
  hgvsp: ENSP00000434559.1:p.Asp271GlufsTer147
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.852delC
  hgvsp: ENSP00000347742.5:p.Asp284GlufsTer147
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1111delC
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.1050delC
  hgvsp: ENSP00000376564.2:p.Asp350GlufsTer147
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: frameshift
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp284GlufsTer147
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: AC
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-119058843-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058843
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058843
    reference: chr 11
allele count: 2
allele frequency: 1.45032632342277e-4
allele num: 13790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1111C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.1050C>T
  hgvsp: ENST00000392817.2:c.1050C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.1050C>T
  hgvsp: ENST00000531114.1:c.1050C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.810C>T
  hgvsp: ENST00000322712.4:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1185C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.948C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.581C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.852C>T
  hgvsp: ENST00000355547.5:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.813C>T
  hgvsp: ENST00000525131.1:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp284Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

11-119058844-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058844
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058844
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 13376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.811G>A
  hgvsp: ENSP00000327107.4:p.Gly271Ser
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.1051G>A
  hgvsp: ENSP00000431164.1:p.Gly351Ser
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1186G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.853G>A
  hgvsp: ENSP00000347742.5:p.Gly285Ser
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.949G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.1051G>A
  hgvsp: ENSP00000376564.2:p.Gly351Ser
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.814G>A
  hgvsp: ENSP00000434559.1:p.Gly272Ser
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000528730
  gene symbol: PDZD3
  hgvsc: ENST00000528730.1:n.582G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1112G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34288
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30059
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly285Ser
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

11-119058847-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058847
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058847
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 13164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.1054C>T
  hgvsp: ENSP00000431164.1:p.Arg352Cys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1189C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.817C>T
  hgvsp: ENSP00000434559.1:p.Arg273Cys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.856C>T
  hgvsp: ENSP00000347742.5:p.Arg286Cys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.952C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.814C>T
  hgvsp: ENSP00000327107.4:p.Arg272Cys
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1115C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.1054C>T
  hgvsp: ENSP00000376564.2:p.Arg352Cys
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34470
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg286Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

11-119058856-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058856
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058856
    reference: chr 11
allele count: 1
allele frequency: 8.21422704123542e-5
allele num: 12174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.1060+3G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.862+3G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.1060+3G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.823+3G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.820+3G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.961G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1124G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1198G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32363
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7551
  bin: 2.25e1
  variant carriers: 0
hgvs: c.862+3G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-119058869-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058869
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058869
    reference: chr 11
allele count: 1
allele frequency: 9.962143853357243e-5
allele num: 10038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1211G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1137G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.823+16G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.1060+16G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.862+16G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.1060+16G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.820+16G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.974G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4990
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31398
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

11-119058874-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058874
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058874
    reference: chr 11
allele count: 1
allele frequency: 1.015022330491271e-4
allele num: 9852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.1060+21C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.1060+21C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.820+21C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1216C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.979C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.862+21C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1142C>T
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.823+21C>T
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

11-119058875-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058875
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058875
    reference: chr 11
allele count: 1
allele frequency: 1.096972356296621e-4
allele num: 9116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.1060+22G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.980G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1217G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.862+22G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1143G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.823+22G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.1060+22G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.820+22G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36499
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9795
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4763
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32234
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

11-119058880-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058880
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058880
    reference: chr 11
allele count: 1
allele frequency: 1.071581654522075e-4
allele num: 9332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1148G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1222G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.820+27G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.862+27G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.1060+27G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.823+27G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.985G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.1060+27G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36623
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3035
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33888
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

11-119058884-AGGTGGGCCTTGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058884
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058872
    reference: chr 11
allele count: 2
allele frequency: 2.16169476869866e-4
allele num: 9252
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 36265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12858
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34072
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: AGGTGGGCCTTGG
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-119058891-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058891
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058891
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 8766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.996C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1159C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.823+38C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.820+38C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.862+38C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1233C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.1060+38C>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.1060+38C>A
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15830
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12179
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

11-119058896-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119058896
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119058896
    reference: chr 11
allele count: 1
allele frequency: 1.123595505617978e-4
allele num: 8900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.1001G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.820+43G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1238G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.823+43G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1164G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.1060+43G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.862+43G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.1060+43G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

11-119059015-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119059015
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119059014
    reference: chr 11
allele count: 2
allele frequency: 1.685630004214075e-5
allele num: 118650
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1284delG
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.1061-48delG
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.824-48delG
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.1121delG
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.1061-48delG
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.863-48delG
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.821-48delG
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1358delG
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: AG
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD

11-119059016-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 119059016
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 119059016
    reference: chr 11
allele count: 1
allele frequency: 8.423038695439767e-6
allele num: 118722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000376564
  ensembl transcript: ENST00000392817
  gene symbol: PDZD3
  hgvsc: ENST00000392817.2:c.1061-48G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000534790
  gene symbol: PDZD3
  hgvsc: ENST00000534790.1:n.1358G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000434559
  ensembl transcript: ENST00000525131
  gene symbol: PDZD3
  hgvsc: ENST00000525131.1:c.824-48G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000327107
  ensembl transcript: ENST00000322712
  gene symbol: PDZD3
  hgvsc: ENST00000322712.4:c.821-48G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000347742
  ensembl transcript: ENST00000355547
  gene symbol: PDZD3
  hgvsc: ENST00000355547.5:c.863-48G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172367
  ensembl protein: ENSP00000431164
  ensembl transcript: ENST00000531114
  gene symbol: PDZD3
  hgvsc: ENST00000531114.1:c.1061-48G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000529098
  gene symbol: PDZD3
  hgvsc: ENST00000529098.1:n.1284G>A
  variant of: http://identifiers.org/hgnc/19891
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172367
  ensembl transcript: ENST00000527028
  gene symbol: PDZD3
  hgvsc: ENST00000527028.1:n.1121G>A
  variant of: http://identifiers.org/hgnc/19891
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24370
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G

GenotypeQuality
all individuals: 236
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1409
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3378
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3019
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4399
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2515
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32115
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12042
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.761183515322297e-4
allele num: 5678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4732
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.401999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

QD
type: SiteQuality
SIO_000300: 1.625e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.12e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.86064e5

FS
type: SiteQuality
SIO_000300: 2.158e0

MQRankSum
type: SiteQuality
SIO_000300: -1.237e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

GenotypeQuality
all individuals: 408
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30667
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5206
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3150
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6695
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2611
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 9.75e1
variant carriers: 5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.310615989515072e-4
allele num: 30520
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.78e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.590000000000001e-1

DP
type: SiteQuality
SIO_000300: 7.66525e5

FS
type: SiteQuality
SIO_000300: 3.758e0

QD
type: SiteQuality
SIO_000300: 9.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 98
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2900
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32354
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6206
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2730
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6870
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2226
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10938
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 7.739938080495357e-4
allele num: 3876
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

FS
type: SiteQuality
SIO_000300: 3.033e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.268e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.155e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

DP
type: SiteQuality
SIO_000300: 7.24451e5

QD
type: SiteQuality
SIO_000300: 7.46e0

GenotypeQuality
all individuals: 2473
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6778
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33914
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7342
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 98
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.921568627450981e-5
allele num: 25500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10644
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.236e0

VQSLOD
type: SiteQuality
SIO_000300: 2.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.66e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.375e0

DP
type: SiteQuality
SIO_000300: 7.09572e5

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

GenotypeQuality
all individuals: 185
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6800
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1678
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3052
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32237
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 97
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8121
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.307003187182359e-5
allele num: 23218
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.591e1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 5.313e0

MQRankSum
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InbreedingCoeff
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ClippingRankSum
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SIO_000300: -8.500000000000001e-2

BaseQRankSum
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SIO_000300: -1.308e0

ReadPosRankSum
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MQ
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DP
type: SiteQuality
SIO_000300: 6.85336e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 9.777082518576456e-5
allele num: 10228
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Latino
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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FS
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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DP
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QD
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MQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.006846556584777e-4
allele num: 9932
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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Other
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MQ
type: SiteQuality
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FS
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QD
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VQSLOD
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DP
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 4.782858236081883e-5
allele num: 20908
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 352
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European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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Latino
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num of homozygotes: 0

VQSLOD
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QD
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MQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18748
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
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num of homozygotes: 0

South Asian
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DP
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MQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 18748
num of homozygotes: 0

East Asian
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num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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African
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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European (Non-Finnish)
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East Asian
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BaseQRankSum
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QD
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VQSLOD
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MQ
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InbreedingCoeff
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ClippingRankSum
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DP
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FS
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1570
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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allele num: 270
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South Asian
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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DP
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VQSLOD
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BaseQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3172
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.113781641523907e-4
allele num: 7822
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1860
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 13878
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.2485e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

BaseQRankSum
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SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.68e0

FS
type: SiteQuality
SIO_000300: 9.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.936e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3228
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.834355828220859e-4
allele num: 7824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 7.167431192660551e-4
allele num: 13952
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.257e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 5.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.23594e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.57e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12746
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1690
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.355380862022228e-4
allele num: 7378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1134
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.883e1

QD
type: SiteQuality
SIO_000300: 7.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.289e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.839e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.79e-2

DP
type: SiteQuality
SIO_000300: 5.00155e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 81
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3060
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.499065102838688e-5
allele num: 11766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.384e1

VQSLOD
type: SiteQuality
SIO_000300: -1.173e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.08e-2

QD
type: SiteQuality
SIO_000300: 7.91e0

DP
type: SiteQuality
SIO_000300: 4.81543e5

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

GenotypeQuality
all individuals: 19181
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 273
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 290
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 3.436426116838488e-4
allele num: 11640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-2

DP
type: SiteQuality
SIO_000300: 4.77773e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.85e-1

FS
type: SiteQuality
SIO_000300: 5.46e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.188e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.11e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.58e-2

QD
type: SiteQuality
SIO_000300: 1.282e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 291
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variant carriers: 22

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 4

South Asian
type: Population
allele count: 6
allele frequency: 9.569377990430622e-4
allele num: 6270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 6.801399144966964e-4
allele num: 10292
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2952
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East Asian
type: Population
allele count: 2
allele frequency: 1.666666666666667e-3
allele num: 1200
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

DP
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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FS
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ClippingRankSum
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SIO_000300: 2.48e-1

MQRankSum
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VQSLOD
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ReadPosRankSum
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SIO_000300: 1.04e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 664
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variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 7.385524372230429e-4
allele num: 2708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4550
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.153e0

VQSLOD
type: SiteQuality
SIO_000300: -2.135e0

DP
type: SiteQuality
SIO_000300: 3.37734e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.231e0

MQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.340000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.447e1

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 605
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 539
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3775
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 154
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 284
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26345
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 240
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 562
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 86
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 8.75e1
variant carriers: 1

East Asian
type: Population
allele count: 14
allele frequency: 2.602230483271376e-2
allele num: 538
num of homozygotes: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.592356687898089e-4
allele num: 6280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2506
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 2.408477842003853e-3
allele num: 2076
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.38e1

FS
type: SiteQuality
SIO_000300: 2.051e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.491e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

DP
type: SiteQuality
SIO_000300: 2.3878e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.9e-2

GenotypeQuality
all individuals: 324
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 346
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6933
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2097
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 154
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 507
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18062
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 152
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 204
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 288
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 1661
bin: 6.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.43878954607978e-4
allele num: 5816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.180602006688963e-4
allele num: 2392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 1.69683257918552e-2
allele num: 884
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.950000000000001e-2

FS
type: SiteQuality
SIO_000300: 3.219e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 2.0057e5

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.313e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
all individuals: 1661
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6933
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 288
bin: 9.75e1
variant carriers: 5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 2.090301003344482e-3
allele num: 2392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5816
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

DP
type: SiteQuality
SIO_000300: 2.0057e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.313e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.950000000000001e-2

FS
type: SiteQuality
SIO_000300: 3.219e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeQuality
all individuals: 84
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6937
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18004
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.182033096926714e-3
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.721763085399449e-4
allele num: 5808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.73e-2

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

DP
type: SiteQuality
SIO_000300: 1.99613e5

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

QD
type: SiteQuality
SIO_000300: 1.361e1

GenotypeQuality
all individuals: 255
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6937
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2099
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18004
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1693
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.443526170798898e-4
allele num: 5808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.73e-2

DP
type: SiteQuality
SIO_000300: 1.99613e5

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

QD
type: SiteQuality
SIO_000300: 1.361e1

GenotypeQuality
all individuals: 7717
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 3.26797385620915e-3
allele num: 306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

VQSLOD
type: SiteQuality
SIO_000300: -2.973e0

QD
type: SiteQuality
SIO_000300: 1.534e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.383e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.52e-2

DP
type: SiteQuality
SIO_000300: 1.96644e5

GenotypeQuality
all individuals: 16473
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8255
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 9.75e1
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GenotypeQuality
all individuals: 97
bin: 5.25e1
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GenotypeQuality
all individuals: 253
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.61e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.96757e5

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 4.41e1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 7.18e0

GenotypeQuality
all individuals: 326
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 525
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3188
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24350
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9620
bin: 2.5e0
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GenotypeQuality
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4404
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4905
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2088
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6178
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.529051987767584e-3
allele num: 654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1484
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.682e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.685e-1

FS
type: SiteQuality
SIO_000300: 2.632e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

QD
type: SiteQuality
SIO_000300: 6.65e0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-2

DP
type: SiteQuality
SIO_000300: 2.77259e5

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5079
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28072
bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 590
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.617076326002587e-4
allele num: 6184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.240000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.86731e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.228e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.843e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.245e1

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 170
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.608751608751609e-4
allele num: 6216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: -1.709e0

QD
type: SiteQuality
SIO_000300: 1.241e1

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.98e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.034e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.94616e5

FS
type: SiteQuality
SIO_000300: 3.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.398e0

GenotypeQuality
all individuals: 2454
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 4.288164665523156e-4
allele num: 2332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

FS
type: SiteQuality
SIO_000300: 1.093e0

VQSLOD
type: SiteQuality
SIO_000300: -2.13e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 3.023e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.24e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.32154e5

GenotypeQuality
all individuals: 83
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1749
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GenotypeQuality
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GenotypeQuality
all individuals: 640
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.13e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 9.08e0

DP
type: SiteQuality
SIO_000300: 3.36887e5

GenotypeQuality
all individuals: 322
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29622
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 625
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variant carriers: 0

GenotypeQuality
all individuals: 167
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variant carriers: 0

GenotypeQuality
all individuals: 279
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variant carriers: 0

GenotypeQuality
all individuals: 89
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GenotypeQuality
all individuals: 1951
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 170
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.97e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.48195e5

VQSLOD
type: SiteQuality
SIO_000300: -2.169e0

QD
type: SiteQuality
SIO_000300: 6.55e0

GenotypeQuality
all individuals: 2004
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15178
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 290
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 6.75e1
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GenotypeQuality
all individuals: 49
bin: 8.75e1
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GenotypeQuality
all individuals: 678
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6776
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2324
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.036e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.84e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.53095e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.791e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 614
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 3.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3460
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.47e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.527e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

FS
type: SiteQuality
SIO_000300: 3.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQ
type: SiteQuality
SIO_000300: 5.516e1

DP
type: SiteQuality
SIO_000300: 4.22276e5

GenotypeQuality
all individuals: 166
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 17395
bin: 7.5e0
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 6197
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variant carriers: 6

GenotypeQuality
all individuals: 1649
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GenotypeQuality
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GenotypeQuality
all individuals: 638
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 58
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GenotypeQuality
all individuals: 710
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variant carriers: 1

GenotypeQuality
all individuals: 202
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variant carriers: 5

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 5

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
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variant carriers: 87

GenotypeQuality
all individuals: 147
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GenotypeQuality
all individuals: 666
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GenotypeQuality
all individuals: 81
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1892
num of homozygotes: 0

South Asian
type: Population
allele count: 79
allele frequency: 1.375348189415042e-2
allele num: 5744
num of homozygotes: 2

African
type: Population
allele count: 1
allele frequency: 3.067484662576687e-4
allele num: 3260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 6.71785028790787e-4
allele num: 10420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 5.208333333333333e-3
allele num: 576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.01e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.91e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

DP
type: SiteQuality
SIO_000300: 5.07344e5

QD
type: SiteQuality
SIO_000300: 1.271e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.596928982725528e-5
allele num: 10420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.01e-2

DP
type: SiteQuality
SIO_000300: 5.07344e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.271e1

VQSLOD
type: SiteQuality
SIO_000300: 5.91e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.273504273504274e-3
allele num: 234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.463e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.32e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 5.15594e5

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.056e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

QD
type: SiteQuality
SIO_000300: 5.58e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 324
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variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.94811320754717e-4
allele num: 3392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.32e-1

QD
type: SiteQuality
SIO_000300: 1.573e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.29e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.836e-1

FS
type: SiteQuality
SIO_000300: 5.9e0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 5.20491e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.23e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 229
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GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12002
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.18e1

DP
type: SiteQuality
SIO_000300: 5.31411e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.53e-2

GenotypeQuality
all individuals: 216
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 22883
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 20171
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GenotypeQuality
all individuals: 372
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variant carriers: 64

GenotypeQuality
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GenotypeQuality
all individuals: 1381
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 113
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GenotypeQuality
all individuals: 55
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variant carriers: 5

South Asian
type: Population
allele count: 13
allele frequency: 1.689189189189189e-3
allele num: 7696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.759633996128805e-4
allele num: 11366
num of homozygotes: 0

East Asian
type: Population
allele count: 50
allele frequency: 2.682403433476395e-2
allele num: 1864
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 2.962085308056872e-3
allele num: 3376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

DP
type: SiteQuality
SIO_000300: 4.95342e5

FS
type: SiteQuality
SIO_000300: 1.102e0

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.244e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.38e-2

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 228
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1404
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GenotypeQuality
all individuals: 100
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GenotypeQuality
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GenotypeQuality
all individuals: 2303
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 24

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 51
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 5.050505050505051e-3
allele num: 198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1792
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.892060197197717e-4
allele num: 7708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 1.51003730680405e-3
allele num: 11258
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.54e-2

DP
type: SiteQuality
SIO_000300: 4.92232e5

QD
type: SiteQuality
SIO_000300: 1.176e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3164
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.59e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

FS
type: SiteQuality
SIO_000300: 3.68e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.51049e5

MQRankSum
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SIO_000300: -9.22e-1

BaseQRankSum
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SIO_000300: 2.02e0

VQSLOD
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SIO_000300: -2.202e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

QD
type: SiteQuality
SIO_000300: 6.76e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 125
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 92
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6682
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GenotypeQuality
all individuals: 334
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.204610951008645e-4
allele num: 1388
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 200
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African
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

VQSLOD
type: SiteQuality
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DP
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SIO_000300: 4.42484e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -5.77e-2

ClippingRankSum
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SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

QD
type: SiteQuality
SIO_000300: 8.01e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1358
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.011940902651285e-4
allele num: 9882
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3092
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 486
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7708
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.33e0

DP
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ClippingRankSum
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QD
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MQRankSum
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SIO_000300: 6.66e-1

BaseQRankSum
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InbreedingCoeff
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SIO_000300: -5.83e-2

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 2918
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 1132
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9220
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 452
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South Asian
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

BaseQRankSum
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QD
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MQRankSum
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SIO_000300: 7.62e-1

FS
type: SiteQuality
SIO_000300: 8.016e0

InbreedingCoeff
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SIO_000300: -6.35e-2

ClippingRankSum
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DP
type: SiteQuality
SIO_000300: 4.18873e5

VQSLOD
type: SiteQuality
SIO_000300: -1.535e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2882
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.306165099268548e-4
allele num: 7656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9124
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.896e1

QD
type: SiteQuality
SIO_000300: 9.16e0

DP
type: SiteQuality
SIO_000300: 4.1488e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 2.652e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -1.129e0

ClippingRankSum
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.41e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 2686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.909999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.266e0

VQSLOD
type: SiteQuality
SIO_000300: 9.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.32e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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DP
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MQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Other
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num of homozygotes: 0

East Asian
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.88e-1

DP
type: SiteQuality
SIO_000300: 3.60281e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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East Asian
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DP
type: SiteQuality
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BaseQRankSum
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FS
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.817e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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African
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MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
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ClippingRankSum
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QD
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InbreedingCoeff
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MQ
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DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.88e-1

GenotypeQuality
all individuals: 219
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6119
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3827
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 127
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2308
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.351716680183834e-4
allele num: 7398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.83e-1

DP
type: SiteQuality
SIO_000300: 3.28851e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.770000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.06e-1

QD
type: SiteQuality
SIO_000300: 1.125e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.151e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4214
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29630
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3972
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 466
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.436368859523126e-4
allele num: 6962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

FS
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.244e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.93e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.761e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.95871e5

GenotypeQuality
all individuals: 4135
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2647
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 785
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29930
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 1

GenotypeQuality
all individuals: 5971
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variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.75e1
variant carriers: 21

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 2.747252747252747e-2
allele num: 546
num of homozygotes: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523925632429137e-4
allele num: 6562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1952
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 1.397624039133473e-3
allele num: 5724
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.73716e5

FS
type: SiteQuality
SIO_000300: 5.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

QD
type: SiteQuality
SIO_000300: 1.25e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.86e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.133e0

GenotypeQuality
all individuals: 3982
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6510
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30435
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5202
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 2.59297e5

QD
type: SiteQuality
SIO_000300: 8.119999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.03e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.231e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30410
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6522
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 994
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
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variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5050
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.145475372279496e-3
allele num: 1746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.56e-1

FS
type: SiteQuality
SIO_000300: 2.404e0

VQSLOD
type: SiteQuality
SIO_000300: -1.829e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.01e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.08e-1

DP
type: SiteQuality
SIO_000300: 2.57241e5

QD
type: SiteQuality
SIO_000300: 1.382e1

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4439
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6379
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.704e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.110000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.51873e5

GenotypeQuality
all individuals: 54
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30604
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6633
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1640
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.04e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.68e0

DP
type: SiteQuality
SIO_000300: 2.51238e5

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

GenotypeQuality
all individuals: 831
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 86
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.850481125092524e-4
allele num: 5404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.88e-2

QD
type: SiteQuality
SIO_000300: 1.411e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.547e0

MQRankSum
type: SiteQuality
SIO_000300: 5.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.46567e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.33e-1

GenotypeQuality
all individuals: 73
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6544
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 7.82472613458529e-4
allele num: 1278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3444
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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MQ
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InbreedingCoeff
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SIO_000300: -8.22e-2

ReadPosRankSum
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SIO_000300: 2.48e-1

VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4540
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

African
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allele frequency: 7.751937984496124e-4
allele num: 1290
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

VQSLOD
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BaseQRankSum
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MQ
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ReadPosRankSum
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DP
type: SiteQuality
SIO_000300: 2.3979e5

FS
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QD
type: SiteQuality
SIO_000300: 8.369999999999999e0

InbreedingCoeff
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SIO_000300: -8.069999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 1208
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 208
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 22
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.332089552238806e-4
allele num: 4288
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 1.4075e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.15e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

DP
type: SiteQuality
SIO_000300: 2.38215e5

QD
type: SiteQuality
SIO_000300: 1.333e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 92
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Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.267573696145125e-4
allele num: 4410
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.335e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.64e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

VQSLOD
type: SiteQuality
SIO_000300: -7.247e-1

DP
type: SiteQuality
SIO_000300: 2.49606e5

MQRankSum
type: SiteQuality
SIO_000300: -6.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.107e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.863e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2792
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.531037607612143e-4
allele num: 4414
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.872e1

FS
type: SiteQuality
SIO_000300: 3.017e0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.41e-2

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.47e0

DP
type: SiteQuality
SIO_000300: 2.59245e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 414
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

DP
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.02e-2

VQSLOD
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 8.064516129032258e-3
allele num: 124
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 4550
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
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MQ
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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InbreedingCoeff
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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South Asian
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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allele num: 65590
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East Asian
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African
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