9-15182418-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15182418
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15182418
    reference: chr 9
allele count: 1
allele frequency: 8.433267553846413e-6
allele num: 118578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-5A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-5A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-5A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-5A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-5A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-5A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-5A>G
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25139
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37063
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1615-5A>G
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

9-15182422-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15182422
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15182422
    reference: chr 9
allele count: 1
allele frequency: 8.459807454782329e-6
allele num: 118206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-9C>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-9C>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-9C>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-9C>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-9C>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-9C>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-9C>A
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17269
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4525
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6768
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-15182424-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15182424
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15182424
    reference: chr 9
allele count: 1
allele frequency: 8.458376330079678e-6
allele num: 118226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-11T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-11T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-11T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-11T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-11T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-11T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-11T>G
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/9-15182433-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15182433
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15182432
    reference: chr 9
allele count: 1
allele frequency: 8.525294548926666e-6
allele num: 117298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-21delG
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-21delG
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-21delG
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-21delG
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-21delG
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-21delG
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-21delG
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16525
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32959
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: AC
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

9-15182435-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15182435
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15182435
    reference: chr 9
allele count: 4
allele frequency: 3.42120118373561e-5
allele num: 116918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-22G>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-22G>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-22G>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-22G>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-22G>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-22G>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-22G>A
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20590
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6336
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4527
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-15182443-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15182443
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15182443
    reference: chr 9
allele count: 1
allele frequency: 8.677843729390121e-6
allele num: 115236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-30C>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-30C>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-30C>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-30C>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-30C>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-30C>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-30C>A
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13823
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20912
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4524
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

9-15182453-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15182453
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15182453
    reference: chr 9
allele count: 1
allele frequency: 8.759482139415918e-6
allele num: 114162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-40C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-40C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-40C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-40C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-40C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-40C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-40C>T
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11806
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2816
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16982
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4522
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4727
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

9-15182462-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15182462
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15182462
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 112448
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-49A>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-49A>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-49A>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-49A>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-49A>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-49A>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-49A>T
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 10090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5803
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5472
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4105
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5452
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

9-15182464-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15182464
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15182464
    reference: chr 9
allele count: 1
allele frequency: 8.979078746520608e-6
allele num: 111370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-51A>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-51A>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-51A>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-51A>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-51A>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-51A>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-51A>T
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8160
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11716
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4675
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5820
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3024
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7482
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

9-15183311-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183311
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183311
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 13414
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-898C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-898C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-898C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-898C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-898C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-898C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-898C>G
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-15183320-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183320
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183320
    reference: chr 9
allele count: 21
allele frequency: 1.562267519714328e-3
allele num: 13442
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-907A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-907A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-907A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-907A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-907A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-907A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-907A>G
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

9-15183324-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183324
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183324
    reference: chr 9
allele count: 1
allele frequency: 7.44158356898348e-5
allele num: 13438
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-911T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-911T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-911T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-911T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-911T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-911T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-911T>C
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

9-15183331-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183331
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183331
    reference: chr 9
allele count: 1
allele frequency: 7.434944237918216e-5
allele num: 13450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-918T>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-918T>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-918T>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-918T>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-918T>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-918T>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-918T>A
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/9-15183352-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183352
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183352
    reference: chr 9
allele count: 2
allele frequency: 1.490757304710793e-4
allele num: 13416
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-939T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-939T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-939T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-939T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-939T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-939T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-939T>G
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

9-15183359-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183359
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183359
    reference: chr 9
allele count: 1
allele frequency: 7.476076555023923e-5
allele num: 13376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-946A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-946A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-946A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-946A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-946A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-946A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-946A>G
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

9-15183377-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183377
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183377
    reference: chr 9
allele count: 1
allele frequency: 7.546030787805614e-5
allele num: 13252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-964A>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-964A>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-964A>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-964A>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-964A>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-964A>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-964A>C
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

9-15183392-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183392
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183392
    reference: chr 9
allele count: 1
allele frequency: 7.581501137225171e-5
allele num: 13190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-979A>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-979A>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-979A>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-979A>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-979A>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-979A>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-979A>C
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-15183431-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183431
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183431
    reference: chr 9
allele count: 1
allele frequency: 7.811279487580065e-5
allele num: 12802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-1018T>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-1018T>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-1018T>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-1018T>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-1018T>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-1018T>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-1018T>A
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3435
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

9-15183460-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183460
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183461
    reference: chr 9
allele count: 6
allele frequency: 2.985074626865672e-3
allele num: 2010
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-1048dupT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-1048dupT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-1048dupT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-1048dupT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-1048dupT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-1048dupT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-1048dupT
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/9-15183461-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183461
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183460
    reference: chr 9
allele count: 79
allele frequency: 6.62751677852349e-2
allele num: 1192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-1049delG
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-1049delG
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-1049delG
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-1049delG
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-1049delG
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-1049delG
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-1049delG
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 7.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 6
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: AC
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

http://identifiers.org/exac.variant/9-15183462-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183462
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183463
    reference: chr 9
allele count: 205
allele frequency: 8.299595141700405e-2
allele num: 2470
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-1050dupT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-1050dupT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-1050dupT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-1050dupT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-1050dupT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-1050dupT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-1050dupT
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.5e0
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 14
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/9-15183462-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183462
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183462
    reference: chr 9
allele count: 42
allele frequency: 1.700404858299595e-2
allele num: 2470
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-1049G>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-1049G>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-1049G>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-1049G>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-1049G>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-1049G>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-1049G>T
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-15183462-C-CAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183462
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183464
    reference: chr 9
allele count: 31
allele frequency: 1.255060728744939e-2
allele num: 2470
alternate allele: CAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-1051_1576-1050dupTT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-1051_1120-1050dupTT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-1051_1120-1050dupTT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-1051_1615-1050dupTT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-1051_1408-1050dupTT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-1051_437-1050dupTT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-1051_1417-1050dupTT
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.5e0
  variant carriers: 3
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/9-15183462-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183462
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183461
    reference: chr 9
allele count: 989
allele frequency: 4.004048582995952e-1
allele num: 2470
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-1050delT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-1050delT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-1050delT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-1050delT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-1050delT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-1050delT
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-1050delT
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 7.5e0
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.75e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.25e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 277
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.25e1
  variant carriers: 268
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.5e0
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 6.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 69
num of homozygotes: 35
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: CA
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

http://identifiers.org/exac.variant/9-15183462-CAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183462
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183460
    reference: chr 9
allele count: 265
allele frequency: 1.072874493927125e-1
allele num: 2470
alternate allele: C
canonical: false
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 7.5e0
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 6.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 6.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 9.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 9.75e1
  variant carriers: 87
num of homozygotes: 1
population: Latino
  type: Population
  allele count: 8
  allele frequency: 1.052631578947368e-1
  allele num: 76
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 6
  allele frequency: 1.428571428571428e-1
  allele num: 42
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 11
  allele frequency: 1.71875e-1
  allele num: 64
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 30
  allele frequency: 1.685393258426966e-1
  allele num: 178
  num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: CAA
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/9-15183462-CAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183462
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183459
    reference: chr 9
allele count: 17
allele frequency: 6.882591093117409e-3
allele num: 2470
alternate allele: C
canonical: false
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.75e1
  variant carriers: 3
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 5
  allele frequency: 5.274261603375527e-3
  allele num: 948
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 1.31578947368421e-2
  allele num: 76
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 294
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 3
  allele frequency: 4.6875e-2
  allele num: 64
  num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: CAAA
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-15183485-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15183485
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15183485
    reference: chr 9
allele count: 3
allele frequency: 5.537098560354374e-4
allele num: 5418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1576-1072C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1417-1072C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1120-1072C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1408-1072C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1120-1072C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1615-1072C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.437-1072C>T
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

9-15185229-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185229
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185229
    reference: chr 9
allele count: 3
allele frequency: 2.645642626594e-5
allele num: 113394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1119+49C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1119+49C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1407+49C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.436+49C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1575+49C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1416+49C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1614+49C>T
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7525
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 884
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/9-15185233-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185233
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185233
    reference: chr 9
allele count: 1
allele frequency: 8.815388141539872e-6
allele num: 113438
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1119+45T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1614+45T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1575+45T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1416+45T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1407+45T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.436+45T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1119+45T>G
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4449
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3252
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD

9-15185242-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185242
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185242
    reference: chr 9
allele count: 1
allele frequency: 8.792600147715683e-6
allele num: 113732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1119+36T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1614+36T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.436+36T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1416+36T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1575+36T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1407+36T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1119+36T>C
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3012
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4924
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum

9-15185243-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185243
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185243
    reference: chr 9
allele count: 1
allele frequency: 8.788118463836893e-6
allele num: 113790
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1416+35A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.436+35A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1119+35A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1575+35A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1407+35A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1614+35A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1119+35A>G
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6420
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2613
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3055
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2821
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD

9-15185246-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185246
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185246
    reference: chr 9
allele count: 1
allele frequency: 8.788118463836893e-6
allele num: 113790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1575+32G>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1119+32G>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1407+32G>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1119+32G>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.436+32G>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1614+32G>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1416+32G>A
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2823
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3253
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum

9-15185249-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185249
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185249
    reference: chr 9
allele count: 3
allele frequency: 2.632410234810993e-5
allele num: 113964
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1614+29C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1407+29C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1119+29C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1416+29C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1575+29C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1119+29C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.436+29C>G
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5412
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2824
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3152
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

9-15185250-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185250
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185250
    reference: chr 9
allele count: 1
allele frequency: 8.766085767383147e-6
allele num: 114076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1575+28A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1119+28A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1416+28A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1407+28A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1614+28A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.436+28A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1119+28A>G
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34443
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

9-15185257-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185257
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185257
    reference: chr 9
allele count: 7
allele frequency: 6.1020258725897e-5
allele num: 114716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1575+21T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.436+21T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1416+21T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1119+21T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1614+21T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1407+21T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1119+21T>C
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3085
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/9-15185262-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185262
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185262
    reference: chr 9
allele count: 4
allele frequency: 3.469090404495941e-5
allele num: 115304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1119+16T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1614+16T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.436+16T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1416+16T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1407+16T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1575+16T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1119+16T>G
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6659
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2928
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/9-15185264-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185264
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185264
    reference: chr 9
allele count: 26
allele frequency: 2.251511110341364e-4
allele num: 115478
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1575+14T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.436+14T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1119+14T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1407+14T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1416+14T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1614+14T>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1119+14T>G
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2836
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

9-15185273-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185273
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185273
    reference: chr 9
allele count: 1
allele frequency: 8.525003836251726e-6
allele num: 117302
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1416+5C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.436+5C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1614+5C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1119+5C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1575+5C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1119+5C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1407+5C>G
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2651
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1614+5C>G
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-15185280-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185280
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185280
    reference: chr 9
allele count: 1
allele frequency: 8.412551526878102e-6
allele num: 118870
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1117C>G
  hgvsp: ENSP00000423392.1:p.Leu373Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.434C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1117C>G
  hgvsp: ENSP00000426539.1:p.Leu373Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1414C>G
  hgvsp: ENSP00000347920.2:p.Leu472Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1405C>G
  hgvsp: ENSP00000297615.5:p.Leu469Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1612C>G
  hgvsp: ENSP00000422496.1:p.Leu538Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1573C>G
  hgvsp: ENSP00000370231.4:p.Leu525Val
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34443
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu538Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

9-15185284-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185284
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185284
    reference: chr 9
allele count: 7
allele frequency: 5.861566545527624e-5
allele num: 119422
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1401T>C
  hgvsp: ENST00000297615.5:c.1401T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1113T>C
  hgvsp: ENST00000507285.1:c.1113T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1113T>C
  hgvsp: ENST00000507993.1:c.1113T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.430T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1608T>C
  hgvsp: ENST00000512701.2:c.1608T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1410T>C
  hgvsp: ENST00000355694.2:c.1410T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1569T>C
  hgvsp: ENST00000380850.4:c.1569T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3263
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9611
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro536Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

9-15185293-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185293
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185293
    reference: chr 9
allele count: 1
allele frequency: 8.322652595835345e-6
allele num: 120154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.421C>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1560C>A
  hgvsp: ENST00000380850.4:c.1560C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1392C>A
  hgvsp: ENST00000297615.5:c.1392C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1104C>A
  hgvsp: ENST00000507993.1:c.1104C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1599C>A
  hgvsp: ENST00000512701.2:c.1599C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1401C>A
  hgvsp: ENST00000355694.2:c.1401C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1104C>A
  hgvsp: ENST00000507285.1:c.1104C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6304
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10186
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu533Leu
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

9-15185304-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185304
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185304
    reference: chr 9
allele count: 2
allele frequency: 1.655683963045134e-5
allele num: 120796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1093C>T
  hgvsp: ENSP00000426539.1:p.Pro365Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1390C>T
  hgvsp: ENSP00000347920.2:p.Pro464Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1549C>T
  hgvsp: ENSP00000370231.4:p.Pro517Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1381C>T
  hgvsp: ENSP00000297615.5:p.Pro461Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1588C>T
  hgvsp: ENSP00000422496.1:p.Pro530Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.410C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1093C>T
  hgvsp: ENSP00000423392.1:p.Pro365Ser
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2851
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro530Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

9-15185315-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185315
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185315
    reference: chr 9
allele count: 2
allele frequency: 1.652127940787734e-5
allele num: 121056
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1379C>G
  hgvsp: ENSP00000347920.2:p.Ser460Cys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1538C>G
  hgvsp: ENSP00000370231.4:p.Ser513Cys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1370C>G
  hgvsp: ENSP00000297615.5:p.Ser457Cys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.399C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1577C>G
  hgvsp: ENSP00000422496.1:p.Ser526Cys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1082C>G
  hgvsp: ENSP00000423392.1:p.Ser361Cys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1082C>G
  hgvsp: ENSP00000426539.1:p.Ser361Cys
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34440
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser526Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum

9-15185317-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185317
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185317
    reference: chr 9
allele count: 9
allele frequency: 7.432733759476735e-5
allele num: 121086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1536C>T
  hgvsp: ENST00000380850.4:c.1536C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1368C>T
  hgvsp: ENST00000297615.5:c.1368C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1575C>T
  hgvsp: ENST00000512701.2:c.1575C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.397C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1080C>T
  hgvsp: ENST00000507285.1:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1377C>T
  hgvsp: ENST00000355694.2:c.1377C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1080C>T
  hgvsp: ENST00000507993.1:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7537
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2682
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1715
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala525Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

9-15185318-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185318
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185318
    reference: chr 9
allele count: 1
allele frequency: 8.258456659619451e-6
allele num: 121088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1079C>T
  hgvsp: ENSP00000423392.1:p.Ala360Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1367C>T
  hgvsp: ENSP00000297615.5:p.Ala456Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1574C>T
  hgvsp: ENSP00000422496.1:p.Ala525Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1079C>T
  hgvsp: ENSP00000426539.1:p.Ala360Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.396C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1376C>T
  hgvsp: ENSP00000347920.2:p.Ala459Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1535C>T
  hgvsp: ENSP00000370231.4:p.Ala512Val
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34435
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala525Val
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

9-15185320-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185320
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185320
    reference: chr 9
allele count: 23
allele frequency: 1.899005911687969e-4
allele num: 121116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1374C>T
  hgvsp: ENST00000355694.2:c.1374C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1533C>T
  hgvsp: ENST00000380850.4:c.1533C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.394C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1572C>T
  hgvsp: ENST00000512701.2:c.1572C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1365C>T
  hgvsp: ENST00000297615.5:c.1365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1077C>T
  hgvsp: ENST00000507993.1:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1077C>T
  hgvsp: ENST00000507285.1:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11033
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser524Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-15185320-GGAGTAACGCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185320
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185310
    reference: chr 9
allele count: 2
allele frequency: 1.651309488424321e-5
allele num: 121116
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsp: ENSP00000422496.1:p.Arg521ProfsTer8
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsp: ENSP00000423392.1:p.Arg356ProfsTer8
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsp: ENSP00000297615.5:p.Arg452ProfsTer8
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsp: ENSP00000370231.4:p.Arg508ProfsTer8
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsp: ENSP00000347920.2:p.Arg455ProfsTer8
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsp: ENSP00000426539.1:p.Arg356ProfsTer8
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11033
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg521ProfsTer8
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: GGAGTAACGCC
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

9-15185321-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185321
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185321
    reference: chr 9
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1076C>G
  hgvsp: ENSP00000423392.1:p.Ser359Cys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1076C>G
  hgvsp: ENSP00000426539.1:p.Ser359Cys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.393C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1364C>G
  hgvsp: ENSP00000297615.5:p.Ser455Cys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1532C>G
  hgvsp: ENSP00000370231.4:p.Ser511Cys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1571C>G
  hgvsp: ENSP00000422496.1:p.Ser524Cys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1373C>G
  hgvsp: ENSP00000347920.2:p.Ser458Cys
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11011
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser524Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

9-15185324-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185324
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185324
    reference: chr 9
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1073A>C
  hgvsp: ENSP00000423392.1:p.Tyr358Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.390A>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1361A>C
  hgvsp: ENSP00000297615.5:p.Tyr454Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1568A>C
  hgvsp: ENSP00000422496.1:p.Tyr523Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1073A>C
  hgvsp: ENSP00000426539.1:p.Tyr358Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1370A>C
  hgvsp: ENSP00000347920.2:p.Tyr457Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1529A>C
  hgvsp: ENSP00000370231.4:p.Tyr510Ser
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11051
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2939
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Tyr523Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-15185326-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185326
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185325
    reference: chr 9
allele count: 1
allele frequency: 8.252459232851389e-6
allele num: 121176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1526delG
  hgvsp: ENSP00000370231.4:p.Arg509LeufsTer10
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1358delG
  hgvsp: ENSP00000297615.5:p.Arg453LeufsTer10
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1565delG
  hgvsp: ENSP00000422496.1:p.Arg522LeufsTer10
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1070delG
  hgvsp: ENSP00000426539.1:p.Arg357LeufsTer10
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1367delG
  hgvsp: ENSP00000347920.2:p.Arg456LeufsTer10
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1070delG
  hgvsp: ENSP00000423392.1:p.Arg357LeufsTer10
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.387delG
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34421
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11072
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg522LeufsTer10
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: AC
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

9-15185327-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185327
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185327
    reference: chr 9
allele count: 3
allele frequency: 2.475574333245313e-5
allele num: 121184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1526G>A
  hgvsp: ENSP00000370231.4:p.Arg509His
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1367G>A
  hgvsp: ENSP00000347920.2:p.Arg456His
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1565G>A
  hgvsp: ENSP00000422496.1:p.Arg522His
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.387G>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1358G>A
  hgvsp: ENSP00000297615.5:p.Arg453His
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1070G>A
  hgvsp: ENSP00000426539.1:p.Arg357His
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1070G>A
  hgvsp: ENSP00000423392.1:p.Arg357His
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg522His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/9-15185327-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185327
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185327
    reference: chr 9
allele count: 2
allele frequency: 1.650382888830209e-5
allele num: 121184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1358G>T
  hgvsp: ENSP00000297615.5:p.Arg453Leu
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.387G>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1070G>T
  hgvsp: ENSP00000426539.1:p.Arg357Leu
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1070G>T
  hgvsp: ENSP00000423392.1:p.Arg357Leu
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1367G>T
  hgvsp: ENSP00000347920.2:p.Arg456Leu
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1526G>T
  hgvsp: ENSP00000370231.4:p.Arg509Leu
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1565G>T
  hgvsp: ENSP00000422496.1:p.Arg522Leu
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34421
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg522Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

9-15185328-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185328
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185328
    reference: chr 9
allele count: 3
allele frequency: 2.475410918212423e-5
allele num: 121192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1357C>T
  hgvsp: ENSP00000297615.5:p.Arg453Cys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.386C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1564C>T
  hgvsp: ENSP00000422496.1:p.Arg522Cys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1366C>T
  hgvsp: ENSP00000347920.2:p.Arg456Cys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1069C>T
  hgvsp: ENSP00000426539.1:p.Arg357Cys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1069C>T
  hgvsp: ENSP00000423392.1:p.Arg357Cys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1525C>T
  hgvsp: ENSP00000370231.4:p.Arg509Cys
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2937
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11070
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg522Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

9-15185330-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185330
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185330
    reference: chr 9
allele count: 3
allele frequency: 2.475084152861197e-5
allele num: 121208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.384G>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1364G>A
  hgvsp: ENSP00000347920.2:p.Arg455Gln
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1355G>A
  hgvsp: ENSP00000297615.5:p.Arg452Gln
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1523G>A
  hgvsp: ENSP00000370231.4:p.Arg508Gln
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1067G>A
  hgvsp: ENSP00000426539.1:p.Arg356Gln
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1562G>A
  hgvsp: ENSP00000422496.1:p.Arg521Gln
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1067G>A
  hgvsp: ENSP00000423392.1:p.Arg356Gln
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg521Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

9-15185331-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185331
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185331
    reference: chr 9
allele count: 8
allele frequency: 6.599135513247765e-5
allele num: 121228
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1561C>T
  hgvsp: ENSP00000422496.1:p.Arg521Trp
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1522C>T
  hgvsp: ENSP00000370231.4:p.Arg508Trp
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1066C>T
  hgvsp: ENSP00000426539.1:p.Arg356Trp
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1363C>T
  hgvsp: ENSP00000347920.2:p.Arg455Trp
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1354C>T
  hgvsp: ENSP00000297615.5:p.Arg452Trp
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1066C>T
  hgvsp: ENSP00000423392.1:p.Arg356Trp
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.383C>T
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2685
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg521Trp
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

9-15185331-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185331
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185331
    reference: chr 9
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1354C>G
  hgvsp: ENSP00000297615.5:p.Arg452Gly
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1561C>G
  hgvsp: ENSP00000422496.1:p.Arg521Gly
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1522C>G
  hgvsp: ENSP00000370231.4:p.Arg508Gly
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.383C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1066C>G
  hgvsp: ENSP00000426539.1:p.Arg356Gly
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1066C>G
  hgvsp: ENSP00000423392.1:p.Arg356Gly
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1363C>G
  hgvsp: ENSP00000347920.2:p.Arg455Gly
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg521Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

9-15185335-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185335
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185335
    reference: chr 9
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1359G>A
  hgvsp: ENST00000355694.2:c.1359G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1518G>A
  hgvsp: ENST00000380850.4:c.1518G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1350G>A
  hgvsp: ENST00000297615.5:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1062G>A
  hgvsp: ENST00000507285.1:c.1062G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1557G>A
  hgvsp: ENST00000512701.2:c.1557G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1062G>A
  hgvsp: ENST00000507993.1:c.1062G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.379G>A
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7541
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys519Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/9-15185338-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185338
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185338
    reference: chr 9
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1059G>T
  hgvsp: ENSP00000423392.1:p.Arg353Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1356G>T
  hgvsp: ENSP00000347920.2:p.Arg452Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1515G>T
  hgvsp: ENSP00000370231.4:p.Arg505Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1059G>T
  hgvsp: ENSP00000426539.1:p.Arg353Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.376G>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1347G>T
  hgvsp: ENSP00000297615.5:p.Arg449Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1554G>T
  hgvsp: ENSP00000422496.1:p.Arg518Ser
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34414
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg518Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

9-15185345-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185345
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185345
    reference: chr 9
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1349C>T
  hgvsp: ENSP00000347920.2:p.Ala450Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1052C>T
  hgvsp: ENSP00000426539.1:p.Ala351Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1052C>T
  hgvsp: ENSP00000423392.1:p.Ala351Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1508C>T
  hgvsp: ENSP00000370231.4:p.Ala503Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.369C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1340C>T
  hgvsp: ENSP00000297615.5:p.Ala447Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1547C>T
  hgvsp: ENSP00000422496.1:p.Ala516Val
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala516Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

9-15185345-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185345
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185345
    reference: chr 9
allele count: 2
allele frequency: 1.648777431534517e-5
allele num: 121302
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1340C>G
  hgvsp: ENSP00000297615.5:p.Ala447Gly
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1052C>G
  hgvsp: ENSP00000426539.1:p.Ala351Gly
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1508C>G
  hgvsp: ENSP00000370231.4:p.Ala503Gly
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1349C>G
  hgvsp: ENSP00000347920.2:p.Ala450Gly
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1547C>G
  hgvsp: ENSP00000422496.1:p.Ala516Gly
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.369C>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1052C>G
  hgvsp: ENSP00000423392.1:p.Ala351Gly
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11176
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2952
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala516Gly
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-15185346-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185346
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185346
    reference: chr 9
allele count: 2
allele frequency: 1.648723063986942e-5
allele num: 121306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1339G>T
  hgvsp: ENSP00000297615.5:p.Ala447Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1507G>T
  hgvsp: ENSP00000370231.4:p.Ala503Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1051G>T
  hgvsp: ENSP00000426539.1:p.Ala351Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.368G>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1051G>T
  hgvsp: ENSP00000423392.1:p.Ala351Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1546G>T
  hgvsp: ENSP00000422496.1:p.Ala516Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1348G>T
  hgvsp: ENSP00000347920.2:p.Ala450Ser
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2850
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34413
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala516Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

9-15185348-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185348
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185348
    reference: chr 9
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1505T>C
  hgvsp: ENSP00000370231.4:p.Phe502Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1337T>C
  hgvsp: ENSP00000297615.5:p.Phe446Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.366T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1346T>C
  hgvsp: ENSP00000347920.2:p.Phe449Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1049T>C
  hgvsp: ENSP00000426539.1:p.Phe350Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1544T>C
  hgvsp: ENSP00000422496.1:p.Phe515Ser
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1049T>C
  hgvsp: ENSP00000423392.1:p.Phe350Ser
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3270
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34412
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe515Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

9-15185362-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185362
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185362
    reference: chr 9
allele count: 3
allele frequency: 2.472595400972554e-5
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1332C>T
  hgvsp: ENST00000355694.2:c.1332C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1323C>T
  hgvsp: ENST00000297615.5:c.1323C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1035C>T
  hgvsp: ENST00000507993.1:c.1035C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1491C>T
  hgvsp: ENST00000380850.4:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.352C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1530C>T
  hgvsp: ENST00000512701.2:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1035C>T
  hgvsp: ENST00000507285.1:c.1035C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7539
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34415
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile510Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

9-15185364-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185364
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185364
    reference: chr 9
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.350A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1321A>G
  hgvsp: ENSP00000297615.5:p.Ile441Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1528A>G
  hgvsp: ENSP00000422496.1:p.Ile510Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1033A>G
  hgvsp: ENSP00000426539.1:p.Ile345Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1330A>G
  hgvsp: ENSP00000347920.2:p.Ile444Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1033A>G
  hgvsp: ENSP00000423392.1:p.Ile345Val
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1489A>G
  hgvsp: ENSP00000370231.4:p.Ile497Val
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3270
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile510Val
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP

9-15185374-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185374
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185374
    reference: chr 9
allele count: 4
allele frequency: 3.296522169111587e-5
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1320C>T
  hgvsp: ENST00000355694.2:c.1320C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1023C>T
  hgvsp: ENST00000507993.1:c.1023C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1023C>T
  hgvsp: ENST00000507285.1:c.1023C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.340C>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1479C>T
  hgvsp: ENST00000380850.4:c.1479C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1518C>T
  hgvsp: ENST00000512701.2:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1311C>T
  hgvsp: ENST00000297615.5:c.1311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11200
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala506Ala
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-15185374-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185374
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185374
    reference: chr 9
allele count: 3
allele frequency: 2.47239162683369e-5
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1320C>A
  hgvsp: ENST00000355694.2:c.1320C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1311C>A
  hgvsp: ENST00000297615.5:c.1311C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1023C>A
  hgvsp: ENST00000507993.1:c.1023C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1479C>A
  hgvsp: ENST00000380850.4:c.1479C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1023C>A
  hgvsp: ENST00000507285.1:c.1023C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1518C>A
  hgvsp: ENST00000512701.2:c.1518C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.340C>A
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala506Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

9-15185379-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185379
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185379
    reference: chr 9
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.335A>T
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1306A>T
  hgvsp: ENSP00000297615.5:p.Ile436Phe
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1018A>T
  hgvsp: ENSP00000423392.1:p.Ile340Phe
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1474A>T
  hgvsp: ENSP00000370231.4:p.Ile492Phe
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1315A>T
  hgvsp: ENSP00000347920.2:p.Ile439Phe
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1513A>T
  hgvsp: ENSP00000422496.1:p.Ile505Phe
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1018A>T
  hgvsp: ENSP00000426539.1:p.Ile340Phe
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3270
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile505Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

9-15185381-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185381
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185381
    reference: chr 9
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1511G>A
  hgvsp: ENSP00000422496.1:p.Arg504Lys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1016G>A
  hgvsp: ENSP00000423392.1:p.Arg339Lys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1304G>A
  hgvsp: ENSP00000297615.5:p.Arg435Lys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.333G>A
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1313G>A
  hgvsp: ENSP00000347920.2:p.Arg438Lys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1016G>A
  hgvsp: ENSP00000426539.1:p.Arg339Lys
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1472G>A
  hgvsp: ENSP00000370231.4:p.Arg491Lys
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34407
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2691
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg504Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

9-15185382-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185382
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185382
    reference: chr 9
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1303A>G
  hgvsp: ENSP00000297615.5:p.Arg435Gly
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.332A>G
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1471A>G
  hgvsp: ENSP00000370231.4:p.Arg491Gly
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1015A>G
  hgvsp: ENSP00000423392.1:p.Arg339Gly
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1312A>G
  hgvsp: ENSP00000347920.2:p.Arg438Gly
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1015A>G
  hgvsp: ENSP00000426539.1:p.Arg339Gly
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1510A>G
  hgvsp: ENSP00000422496.1:p.Arg504Gly
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34407
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg504Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

9-15185385-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185385
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185385
    reference: chr 9
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1012C>G
  hgvsp: ENSP00000426539.1:p.Gln338Glu
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1309C>G
  hgvsp: ENSP00000347920.2:p.Gln437Glu
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1468C>G
  hgvsp: ENSP00000370231.4:p.Gln490Glu
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1507C>G
  hgvsp: ENSP00000422496.1:p.Gln503Glu
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1012C>G
  hgvsp: ENSP00000423392.1:p.Gln338Glu
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1300C>G
  hgvsp: ENSP00000297615.5:p.Gln434Glu
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.329C>G
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2691
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11183
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34406
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln503Glu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

9-15185391-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185391
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185391
    reference: chr 9
allele count: 5
allele frequency: 4.12139995713744e-5
allele num: 121318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1303T>C
  hgvsp: ENST00000355694.2:c.1303T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1294T>C
  hgvsp: ENST00000297615.5:c.1294T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1501T>C
  hgvsp: ENST00000512701.2:c.1501T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.1006T>C
  hgvsp: ENST00000507993.1:c.1006T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.323T>C
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.1006T>C
  hgvsp: ENST00000507285.1:c.1006T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1462T>C
  hgvsp: ENST00000380850.4:c.1462T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3270
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu501Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

9-15185402-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15185402
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 15185402
    reference: chr 9
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000422496
  ensembl transcript: ENST00000512701
  gene symbol: TTC39B
  hgvsc: ENST00000512701.2:c.1490A>G
  hgvsp: ENSP00000422496.1:p.Gln497Arg
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000297615
  ensembl transcript: ENST00000297615
  gene symbol: TTC39B
  hgvsc: ENST00000297615.5:c.1283A>G
  hgvsp: ENSP00000297615.5:p.Gln428Arg
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000423392
  ensembl transcript: ENST00000507993
  gene symbol: TTC39B
  hgvsc: ENST00000507993.1:c.995A>G
  hgvsp: ENSP00000423392.1:p.Gln332Arg
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000426539
  ensembl transcript: ENST00000507285
  gene symbol: TTC39B
  hgvsc: ENST00000507285.1:c.995A>G
  hgvsp: ENSP00000426539.1:p.Gln332Arg
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000347920
  ensembl transcript: ENST00000355694
  gene symbol: TTC39B
  hgvsc: ENST00000355694.2:c.1292A>G
  hgvsp: ENSP00000347920.2:p.Gln431Arg
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000155158
  ensembl protein: ENSP00000370231
  ensembl transcript: ENST00000380850
  gene symbol: TTC39B
  hgvsc: ENST00000380850.4:c.1451A>G
  hgvsp: ENSP00000370231.4:p.Gln484Arg
  variant of: http://identifiers.org/hgnc/23704
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155158
  ensembl transcript: ENST00000380853
  gene symbol: TTC39B
  hgvsc: ENST00000380853.1:n.312A>G
  variant of: http://identifiers.org/hgnc/23704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2940
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln497Arg
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 578
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4525
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6848
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.570302233902759e-5
allele num: 15220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

FS
type: SiteQuality
SIO_000300: 8.316000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.659e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.56e-1

QD
type: SiteQuality
SIO_000300: 6.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.877e0

DP
type: SiteQuality
SIO_000300: 1.674212e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1408
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.623393826996953e-5
allele num: 15098
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.666568e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.266e0

MQRankSum
type: SiteQuality
SIO_000300: -1.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e0

VQSLOD
type: SiteQuality
SIO_000300: -4.045e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.225e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166588894073728e-4
allele num: 8572
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15096
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65564
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.57e-1

QD
type: SiteQuality
SIO_000300: 1.538e1

DP
type: SiteQuality
SIO_000300: 1.665751e6

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

FS
type: SiteQuality
SIO_000300: 7.624e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.85e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535720867375146e-5
allele num: 65116
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.626683e6

VQSLOD
type: SiteQuality
SIO_000300: 4.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.58e0

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

MQ
type: SiteQuality
SIO_000300: 6.043e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.826870562534134e-5
allele num: 14648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.62064504204787e-5
allele num: 64926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.613629e6

FS
type: SiteQuality
SIO_000300: 5.306e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.992e0

QD
type: SiteQuality
SIO_000300: 1.366e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558117793705204e-5
allele num: 64180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14006
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.071e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.339e0

DP
type: SiteQuality
SIO_000300: 1.539084e6

QD
type: SiteQuality
SIO_000300: 1.355e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.95e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.31528895391368e-5
allele num: 13670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.490248e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.851e1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.64e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62892
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13180
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 3.8e-3

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.375e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11056
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.605239501733659e-5
allele num: 62296
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8088
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InbreedingCoeff
type: SiteQuality
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MQ
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ReadPosRankSum
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BaseQRankSum
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QD
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FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1446
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

FS
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MQ
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.249652874201611e-3
allele num: 7202
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.882352941176471e-3
allele num: 170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 2.985884907709012e-3
allele num: 3684
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

QD
type: SiteQuality
SIO_000300: 1.246e1

DP
type: SiteQuality
SIO_000300: 1.6746e5

FS
type: SiteQuality
SIO_000300: 1.329e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.51e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.91e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1456
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.389660922734853e-4
allele num: 7196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.113e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.741e0

DP
type: SiteQuality
SIO_000300: 1.68328e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.858e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 127
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.389274798555154e-4
allele num: 7198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.74e-1

DP
type: SiteQuality
SIO_000300: 1.69879e5

QD
type: SiteQuality
SIO_000300: 8.300000000000001e0

FS
type: SiteQuality
SIO_000300: 1.232e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.63e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3678
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.79876854184159e-4
allele num: 7146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 1.70407e5

QD
type: SiteQuality
SIO_000300: 1.081e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

VQSLOD
type: SiteQuality
SIO_000300: -3.706e-1

FS
type: SiteQuality
SIO_000300: 2.112e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 2.25e1
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GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.409244644870349e-4
allele num: 7096
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.602e0

MQRankSum
type: SiteQuality
SIO_000300: -4.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

DP
type: SiteQuality
SIO_000300: 1.69811e5

VQSLOD
type: SiteQuality
SIO_000300: -2.376e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.31e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 131
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GenotypeQuality
all individuals: 33
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.811594202898551e-3
allele num: 552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.132e0

FS
type: SiteQuality
SIO_000300: 6.877e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.24e-2

DP
type: SiteQuality
SIO_000300: 1.66519e5

VQSLOD
type: SiteQuality
SIO_000300: 4.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.12e-1

QD
type: SiteQuality
SIO_000300: 1.52e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 44
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.446340757882557e-4
allele num: 6914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3632
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.697e-1

QD
type: SiteQuality
SIO_000300: 1.337e1

DP
type: SiteQuality
SIO_000300: 1.64044e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.99e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.07e-1

GenotypeQuality
all individuals: 45
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 825
bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.516990291262136e-4
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.483e0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

QD
type: SiteQuality
SIO_000300: 7.66e0

DP
type: SiteQuality
SIO_000300: 1.40267e5

FS
type: SiteQuality
SIO_000300: 5.035e0

MQ
type: SiteQuality
SIO_000300: 5.674e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.44e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 170
bin: 2.25e1
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GenotypeQuality
all individuals: 119
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GenotypeQuality
all individuals: 84
bin: 4.75e1
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GenotypeQuality
all individuals: 60
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.449275362318841e-2
allele num: 138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 6.024096385542169e-3
allele num: 498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.47e0

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

FS
type: SiteQuality
SIO_000300: 9.3789e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

QD
type: SiteQuality
SIO_000300: 2.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.099999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.06899e5

VQSLOD
type: SiteQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 66
bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 30
bin: 6.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 129
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GenotypeQuality
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bin: 6.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 41
allele frequency: 1.29746835443038e-1
allele num: 316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 4.49438202247191e-2
allele num: 534
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 8.749999999999999e-2
allele num: 80
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.666666666666667e-2
allele num: 180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.173913043478261e-2
allele num: 46
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 1.5e-1
allele num: 20
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.92489e2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-2

BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 1.05955e5

MQ
type: SiteQuality
SIO_000300: 5.932e1

VQSLOD
type: SiteQuality
SIO_000300: -2.897e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.452e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

GenotypeQuality
all individuals: 49
bin: 7.25e1
variant carriers: 7

GenotypeQuality
all individuals: 66
bin: 6.25e1
variant carriers: 15

GenotypeQuality
all individuals: 2630
bin: 2.5e0
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GenotypeQuality
all individuals: 386
bin: 9.75e1
variant carriers: 56

GenotypeQuality
all individuals: 48
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 54
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 64
bin: 6.75e1
variant carriers: 13

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 16

GenotypeQuality
all individuals: 43
bin: 9.25e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 68
allele frequency: 7.172995780590717e-2
allele num: 948
num of homozygotes: 1

Latino
type: Population
allele count: 3
allele frequency: 3.947368421052631e-2
allele num: 76
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 89
allele frequency: 1.025345622119816e-1
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.6875e-2
allele num: 64
num of homozygotes: 0

African
type: Population
allele count: 35
allele frequency: 1.19047619047619e-1
allele num: 294
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.247191011235955e-2
allele num: 178
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 7.142857142857142e-2
allele num: 42
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 7.055e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

DP
type: SiteQuality
SIO_000300: 8.5997e4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.448e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 6.78e0

GenotypeQuality
all individuals: 48
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 198
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 43
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 386
bin: 9.75e1
variant carriers: 7

European (Finnish)
type: Population
allele count: 24
allele frequency: 2.531645569620253e-2
allele num: 948
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.401360544217687e-3
allele num: 294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.497695852534562e-2
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.247191011235955e-2
allele num: 178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.78e0

DP
type: SiteQuality
SIO_000300: 8.5997e4

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.448e-1

FS
type: SiteQuality
SIO_000300: 7.055e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.08e-1

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 66
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2630
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 48
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 43
bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 4
allele frequency: 1.360544217687075e-2
allele num: 294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.31578947368421e-2
allele num: 76
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.054852320675105e-2
allele num: 948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 1.84331797235023e-2
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.055e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.448e-1

DP
type: SiteQuality
SIO_000300: 8.5997e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.08e-1

QD
type: SiteQuality
SIO_000300: 6.78e0

GenotypeQuality
all individuals: 77
bin: 2.75e1
variant carriers: 51

GenotypeQuality
all individuals: 95
bin: 2.25e1
variant carriers: 72

GenotypeQuality
all individuals: 43
bin: 9.25e1
variant carriers: 36

GenotypeQuality
all individuals: 386
bin: 9.75e1
variant carriers: 291

GenotypeQuality
all individuals: 2630
bin: 2.5e0
variant carriers: 84

GenotypeQuality
all individuals: 48
bin: 8.25e1
variant carriers: 36

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 42

GenotypeQuality
all individuals: 49
bin: 7.25e1
variant carriers: 36

GenotypeQuality
all individuals: 66
bin: 6.25e1
variant carriers: 42

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 35

East Asian
type: Population
allele count: 27
allele frequency: 4.21875e-1
allele num: 64
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 353
allele frequency: 4.066820276497696e-1
allele num: 868
num of homozygotes: 13

South Asian
type: Population
allele count: 62
allele frequency: 3.483146067415731e-1
allele num: 178
num of homozygotes: 1

African
type: Population
allele count: 124
allele frequency: 4.217687074829932e-1
allele num: 294
num of homozygotes: 1

Latino
type: Population
allele count: 32
allele frequency: 4.210526315789473e-1
allele num: 76
num of homozygotes: 0

Other
type: Population
allele count: 19
allele frequency: 4.523809523809524e-1
allele num: 42
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 372
allele frequency: 3.924050632911392e-1
allele num: 948
num of homozygotes: 17

QD
type: SiteQuality
SIO_000300: 6.78e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 8.5997e4

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.448e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 7.055e0

European (Non-Finnish)
type: Population
allele count: 76
allele frequency: 8.755760368663594e-2
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 108
allele frequency: 1.139240506329114e-1
allele num: 948
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 8.843537414965986e-2
allele num: 294
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.448e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.08e-1

FS
type: SiteQuality
SIO_000300: 7.055e0

DP
type: SiteQuality
SIO_000300: 8.5997e4

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

QD
type: SiteQuality
SIO_000300: 6.78e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

South Asian
type: Population
allele count: 3
allele frequency: 1.685393258426966e-2
allele num: 178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 5.76036866359447e-3
allele num: 868
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.08e-1

FS
type: SiteQuality
SIO_000300: 7.055e0

DP
type: SiteQuality
SIO_000300: 8.5997e4

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
type: SiteQuality
SIO_000300: 6.78e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.448e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

GenotypeQuality
all individuals: 108
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 9.75e1
variant carriers: 6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.180232558139535e-3
allele num: 1376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1572
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.76e-2

FS
type: SiteQuality
SIO_000300: 3.402e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.033e0

MQ
type: SiteQuality
SIO_000300: 5.739e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 9.8255e4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

QD
type: SiteQuality
SIO_000300: 1.345e1

GenotypeQuality
all individuals: 439
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34442
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2191
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4136
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2825
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3250
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.653038434097466e-5
allele num: 64474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

FS
type: SiteQuality
SIO_000300: 2.856e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-1

DP
type: SiteQuality
SIO_000300: 2.671301e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.362e0

VQSLOD
type: SiteQuality
SIO_000300: 9.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

QD
type: SiteQuality
SIO_000300: 1.036e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 2536
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34441
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2483
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2821
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1375
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2613
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.900990099009902e-5
allele num: 10100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64500
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.701e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.83e-1

DP
type: SiteQuality
SIO_000300: 2.67335e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

MQ
type: SiteQuality
SIO_000300: 5.88e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.425e-1

GenotypeQuality
all individuals: 238
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34444
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2512
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3252
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2822
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1387
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548610896026264e-5
allele num: 64574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

VQSLOD
type: SiteQuality
SIO_000300: 5.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

QD
type: SiteQuality
SIO_000300: 1.666e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.678963e6

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

GenotypeQuality
all individuals: 1389
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4988
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3252
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2506
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34443
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64582
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.588114050154586e-5
allele num: 11644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.175999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-1

DP
type: SiteQuality
SIO_000300: 2.679543e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.884e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.487e1

GenotypeQuality
all individuals: 1394
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2505
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34442
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 179
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2615
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64596
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168770453482936e-4
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

MQ
type: SiteQuality
SIO_000300: 5.989e1

FS
type: SiteQuality
SIO_000300: 2.725e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

DP
type: SiteQuality
SIO_000300: 2.681833e6

QD
type: SiteQuality
SIO_000300: 1.161e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.936e0

GenotypeQuality
all individuals: 161
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2620
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34444
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 794
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3253
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2509
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.959163543105149e-4
allele num: 10138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

QD
type: SiteQuality
SIO_000300: 1.255e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.159e0

DP
type: SiteQuality
SIO_000300: 2.685312e6

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.696e0

GenotypeQuality
all individuals: 5456
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546216408448527e-5
allele num: 64674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

QD
type: SiteQuality
SIO_000300: 1.179e1

DP
type: SiteQuality
SIO_000300: 2.686227e6

VQSLOD
type: SiteQuality
SIO_000300: 3.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 2.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

MQRankSum
type: SiteQuality
SIO_000300: -1.168e0

GenotypeQuality
all individuals: 1709
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5972
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34445
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2626
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3253
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.079813655014963e-4
allele num: 64826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12208
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.56e-1

QD
type: SiteQuality
SIO_000300: 1.34e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

DP
type: SiteQuality
SIO_000300: 2.696089e6

MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.57e0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
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variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34445
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.153846153846154e-5
allele num: 65000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e0

DP
type: SiteQuality
SIO_000300: 2.703118e6

QD
type: SiteQuality
SIO_000300: 1.378e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 152
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3255
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variant carriers: 0

GenotypeQuality
all individuals: 6678
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variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34453
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 26
allele frequency: 2.050473186119874e-3
allele num: 12680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

DP
type: SiteQuality
SIO_000300: 2.705471e6

MQ
type: SiteQuality
SIO_000300: 5.987e1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-2

QD
type: SiteQuality
SIO_000300: 1.486e1

VQSLOD
type: SiteQuality
SIO_000300: 5.21e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2664
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
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variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 356
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1715
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2839
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525599560627327e-5
allele num: 65548
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

DP
type: SiteQuality
SIO_000300: 2.725269e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 4.85e-1

QD
type: SiteQuality
SIO_000300: 1.162e1

FS
type: SiteQuality
SIO_000300: 1.587e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.89e-1

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 9410
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2741
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2670
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515978412467406e-5
allele num: 65964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.825e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.393e0

QD
type: SiteQuality
SIO_000300: 8.529999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 2.741435e6

VQSLOD
type: SiteQuality
SIO_000300: -2.056e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.94e-1

GenotypeQuality
all individuals: 1050
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1451
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GenotypeQuality
all individuals: 2674
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.058585125366724e-4
allele num: 66126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

DP
type: SiteQuality
SIO_000300: 2.747695e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.235e0

QD
type: SiteQuality
SIO_000300: 1.178e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.944e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.94e-1

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2832
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3266
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34440
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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QD
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 1.733402669440111e-4
allele num: 11538
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Other
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allele frequency: 0.0e0
allele num: 900
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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FS
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VQSLOD
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MQRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.926782273603083e-4
allele num: 10380
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Other
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allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66572
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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BaseQRankSum
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VQSLOD
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MQ
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DP
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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QD
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FS
type: SiteQuality
SIO_000300: 1.064e0

ReadPosRankSum
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SIO_000300: 9.9e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66576
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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South Asian
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allele frequency: 5.475118627570264e-4
allele num: 16438
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8636
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Latino
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allele frequency: 0.0e0
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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DP
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 902
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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African
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allele frequency: 0.0e0
allele num: 10380
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.50195253829979e-5
allele num: 66580
num of homozygotes: 0

South Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

FS
type: SiteQuality
SIO_000300: 1.514e0

DP
type: SiteQuality
SIO_000300: 2.767715e6

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-2

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.82e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.372e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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allele num: 8640
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Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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Latino
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African
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allele frequency: 9.632055480639569e-5
allele num: 10382
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European (Non-Finnish)
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allele count: 21
allele frequency: 3.153342543095682e-4
allele num: 66596
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
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InbreedingCoeff
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QD
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DP
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FS
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MQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 2.314814814814815e-4
allele num: 8640
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66596
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Latino
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Other
type: Population
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MQ
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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DP
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QD
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FS
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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South Asian
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African
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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MQ
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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Latino
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South Asian
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FS
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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QD
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MQRankSum
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InbreedingCoeff
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DP
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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African
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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European (Finnish)
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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FS
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MQRankSum
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ReadPosRankSum
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SIO_000300: 1.1e-2

DP
type: SiteQuality
SIO_000300: 2.767204e6

QD
type: SiteQuality
SIO_000300: 3.494e1

GenotypeQuality
all individuals: 2849
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34421
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3269
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2938
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11069
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213739531496541e-4
allele num: 16478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.767097e6

FS
type: SiteQuality
SIO_000300: 1.752e0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

VQSLOD
type: SiteQuality
SIO_000300: 4.23e-1

QD
type: SiteQuality
SIO_000300: 1.201e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2849
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3269
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.752e0

QD
type: SiteQuality
SIO_000300: 1.201e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 2.767097e6

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34420
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3269
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.18e1

VQSLOD
type: SiteQuality
SIO_000300: 6.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.97e-1

FS
type: SiteQuality
SIO_000300: 3.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

DP
type: SiteQuality
SIO_000300: 2.767505e6

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2852
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 2934
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 11095
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2685
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variant carriers: 0

GenotypeQuality
all individuals: 34418
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.501935832407936e-5
allele num: 66638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 1.374e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 4.055e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.767452e6

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11126
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2849
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2938
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34416
bin: 9.75e1
variant carriers: 8

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73460537727667e-4
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.001320290463902e-5
allele num: 66652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

QD
type: SiteQuality
SIO_000300: 1.404e1

VQSLOD
type: SiteQuality
SIO_000300: 5.76e0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.767765e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.46e-1

GenotypeQuality
all individuals: 11126
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2849
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2685
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34416
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1717
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

QD
type: SiteQuality
SIO_000300: 1.404e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

DP
type: SiteQuality
SIO_000300: 2.767765e6

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34415
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.65e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.845e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

QD
type: SiteQuality
SIO_000300: 2.241e1

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-2

DP
type: SiteQuality
SIO_000300: 2.767396e6

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2947
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.47e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.13e-1

FS
type: SiteQuality
SIO_000300: 4.426e0

DP
type: SiteQuality
SIO_000300: 2.76753e6

VQSLOD
type: SiteQuality
SIO_000300: 5.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.247e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2849
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11176
bin: 6.25e1
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GenotypeQuality
all individuals: 2688
bin: 7.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2952
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.52e-1

FS
type: SiteQuality
SIO_000300: 3.213e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

QD
type: SiteQuality
SIO_000300: 1.412e1

DP
type: SiteQuality
SIO_000300: 2.767734e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.735e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2849
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34414
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2688
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11540
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European (Non-Finnish)
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allele frequency: 2.999040307101727e-5
allele num: 66688
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
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QD
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VQSLOD
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BaseQRankSum
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FS
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DP
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InbreedingCoeff
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MQRankSum
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MQ
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8646
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Latino
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allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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VQSLOD
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FS
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10400
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South Asian
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allele frequency: 0.0e0
allele num: 16508
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.499160470136723e-5
allele num: 66704
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ReadPosRankSum
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FS
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SIO_000300: 9.22e-1

MQRankSum
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DP
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MQ
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

QD
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SIO_000300: 1.507e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
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allele num: 10402
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.817300702689605e-4
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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VQSLOD
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MQ
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SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 6.3e-1

DP
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MQRankSum
type: SiteQuality
SIO_000300: 3.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.59e-1

QD
type: SiteQuality
SIO_000300: 7.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.56e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.113e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.52e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.978e1

FS
type: SiteQuality
SIO_000300: 1.821e0

MQRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

DP
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SIO_000300: 2.767481e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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South Asian
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allele frequency: 1.817520901490367e-4
allele num: 16506
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VQSLOD
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DP
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QD
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FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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European (Finnish)
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allele num: 6614
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Other
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South Asian
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African
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European (Non-Finnish)
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FS
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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QD
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MQRankSum
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BaseQRankSum
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MQ
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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Latino
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Other
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South Asian
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European (Non-Finnish)
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DP
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MQ
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QD
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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Latino
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South Asian
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East Asian
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MQRankSum
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MQ
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QD
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ReadPosRankSum
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FS
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InbreedingCoeff
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DP
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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Latino
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Other
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South Asian
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.605e0

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

QD
type: SiteQuality
SIO_000300: 1.694e1

FS
type: SiteQuality
SIO_000300: 4.906e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

DP
type: SiteQuality
SIO_000300: 2.766949e6

GenotypeQuality
all individuals: 1716
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2847
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2953
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.685e0

DP
type: SiteQuality
SIO_000300: 2.76672e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.812e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.825e0

MQRankSum
type: SiteQuality
SIO_000300: -2.584e0

FS
type: SiteQuality
SIO_000300: 9.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

QD
type: SiteQuality
SIO_000300: 1.325e1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34405
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2847
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11180
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.047777441790142e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-1

FS
type: SiteQuality
SIO_000300: 5.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

DP
type: SiteQuality
SIO_000300: 2.766581e6

QD
type: SiteQuality
SIO_000300: 1.345e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0