11-18424536-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18424536
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18424536
    reference: chr 11
allele count: 1
allele frequency: 8.272119647938589e-6
allele num: 120888
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.568C>T
  hgvsp: ENSP00000227157.4:p.Leu190Phe
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.565C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-749C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.568C>T
  hgvsp: ENSP00000445331.1:p.Leu190Phe
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*312C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*225C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.568C>T
  hgvsp: ENSP00000395337.3:p.Leu190Phe
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*312C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.568C>T
  hgvsp: ENSP00000368722.5:p.Leu190Phe
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1435C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.394C>T
  hgvsp: ENSP00000406172.2:p.Leu132Phe
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.568C>T
  hgvsp: ENSP00000379524.2:p.Leu190Phe
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1243C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.655C>T
  hgvsp: ENSP00000445175.1:p.Leu219Phe
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.455C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*138C>T
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu219Phe
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

11-18424545-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18424545
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18424545
    reference: chr 11
allele count: 1
allele frequency: 8.27841981522567e-6
allele num: 120796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*321C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*234C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.403C>T
  hgvsp: ENSP00000406172.2:p.His135Tyr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-740C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1252C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.577C>T
  hgvsp: ENSP00000379524.2:p.His193Tyr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*321C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1444C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.574C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.577C>T
  hgvsp: ENSP00000368722.5:p.His193Tyr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.664C>T
  hgvsp: ENSP00000445175.1:p.His222Tyr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.577C>T
  hgvsp: ENSP00000227157.4:p.His193Tyr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.577C>T
  hgvsp: ENSP00000445331.1:p.His193Tyr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*147C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.577C>T
  hgvsp: ENSP00000395337.3:p.His193Tyr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.464C>T
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His222Tyr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-18424547-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18424547
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18424547
    reference: chr 11
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.576T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1446T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-738T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.579T>C
  hgvsp: ENST00000227157.4:c.579T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*323T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.579T>C
  hgvsp: ENST00000396222.2:c.579T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.405T>C
  hgvsp: ENST00000430553.2:c.405T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.579T>C
  hgvsp: ENST00000379412.5:c.579T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.579T>C
  hgvsp: ENST00000422447.3:c.579T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*323T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.666T>C
  hgvsp: ENST00000540430.1:c.666T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1254T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*149T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.579T>C
  hgvsp: ENST00000542179.1:c.579T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*236T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.466T>C
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His222His
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-18424567-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18424567
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18424567
    reference: chr 11
allele count: 1
allele frequency: 8.359386755387625e-6
allele num: 119626
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.479+7A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.592+7A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.592+7A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1459+7A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*162+7A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.418+7A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1267+7A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*249+7A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.679+7A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.592+7A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*336+7A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.589+7A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*336+7A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.592+7A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-718A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.592+7A>G
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16201
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.679+7A>G
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

11-18424574-ATTTTCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18424574
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18424568
    reference: chr 11
allele count: 1
allele frequency: 8.381667616588997e-6
allele num: 119308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-706_245-701delCTTTTT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*336+19_*336+24delCTTTTT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*336+19_*336+24delCTTTTT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.592+19_592+24delCTTTTT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.589+19_589+24delCTTTTT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.679+19_679+24delCTTTTT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.592+19_592+24delCTTTTT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*249+19_*249+24delCTTTTT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*162+19_*162+24delCTTTTT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1459+19_1459+24delCTTTTT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.418+19_418+24delCTTTTT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.592+19_592+24delCTTTTT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.592+19_592+24delCTTTTT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.479+19_479+24delCTTTTT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1267+19_1267+24delCTTTTT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.592+19_592+24delCTTTTT
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 9190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: ATTTTCT
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

11-18424577-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18424577
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18424577
    reference: chr 11
allele count: 1
allele frequency: 8.409014463504877e-6
allele num: 118920
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.592+17T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*249+17T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.592+17T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.592+17T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.589+17T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.592+17T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*162+17T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1267+17T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.679+17T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.592+17T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.418+17T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*336+17T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-708T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1459+17T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.479+17T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*336+17T>G
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

11-18424590-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18424590
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18424590
    reference: chr 11
allele count: 82292
allele frequency: 7.013602427300311e-1
allele num: 117332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1459+30T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.592+30T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1267+30T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*162+30T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-695T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.592+30T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.592+30T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.589+30T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.592+30T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.679+30T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*336+30T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.418+30T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*336+30T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.479+30T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.592+30T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*249+30T>A
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.75e1
  variant carriers: 2705
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.5e0
  variant carriers: 809
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 6.25e1
  variant carriers: 1130
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 672
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 1.75e1
  variant carriers: 3760
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 490
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 1393
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 266
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.25e1
  variant carriers: 1648
genotype quality: GenotypeQuality
num of homozygotes: 29099
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

11-18424596-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18424596
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18424596
    reference: chr 11
allele count: 7
allele frequency: 6.191074239824528e-5
allele num: 113066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1267+36G>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.592+36G>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.418+36G>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*249+36G>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.592+36G>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.589+36G>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.592+36G>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.479+36G>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1459+36G>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.592+36G>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.592+36G>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-689G>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.679+36G>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*162+36G>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*336+36G>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*336+36G>T
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13487
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14326
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

11-18424596-GATT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18424596
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18424593
    reference: chr 11
allele count: 2
allele frequency: 1.768878354235579e-5
allele num: 113066
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.592+39_592+41delTAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.679+39_679+41delTAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.592+39_592+41delTAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-686_245-684delTAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*249+39_*249+41delTAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*336+39_*336+41delTAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.418+39_418+41delTAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1459+39_1459+41delTAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.479+39_479+41delTAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*162+39_*162+41delTAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.589+39_589+41delTAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.592+39_592+41delTAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.592+39_592+41delTAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*336+39_*336+41delTAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.592+39_592+41delTAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1267+39_1267+41delTAT
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: GATT
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

11-18424599-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18424599
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18424599
    reference: chr 11
allele count: 2
allele frequency: 1.779201138688729e-5
allele num: 112410
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.679+39T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.479+39T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.592+39T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.592+39T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.418+39T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.589+39T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*336+39T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.592+39T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1459+39T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.592+39T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*249+39T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*162+39T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1267+39T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-686T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.592+39T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*336+39T>G
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12918
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6699
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

11-18424603-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18424603
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18424601
    reference: chr 11
allele count: 1
allele frequency: 9.056330374932077e-6
allele num: 110420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.592+47_592+48delAA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.592+47_592+48delAA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.418+47_418+48delAA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.679+47_679+48delAA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.479+47_479+48delAA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*249+47_*249+48delAA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-678_245-677delAA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.589+47_589+48delAA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.592+47_592+48delAA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.592+47_592+48delAA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*336+47_*336+48delAA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1459+47_1459+48delAA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*162+47_*162+48delAA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.592+47_592+48delAA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*336+47_*336+48delAA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1267+47_1267+48delAA
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16340
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: TAA
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

11-18424604-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18424604
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18424604
    reference: chr 11
allele count: 1
allele frequency: 9.063717937097797e-6
allele num: 110330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.589+44A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.592+44A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.418+44A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*336+44A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-681A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*249+44A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1459+44A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1267+44A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.679+44A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*336+44A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.479+44A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.592+44A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*162+44A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.592+44A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.592+44A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.592+44A>G
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

11-18424611-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18424611
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18424611
    reference: chr 11
allele count: 2
allele frequency: 1.888966546402463e-5
allele num: 105878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-674C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.592+51C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.679+51C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1459+51C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*336+51C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.592+51C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*162+51C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.592+51C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.589+51C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.418+51C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.479+51C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*249+51C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*336+51C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.592+51C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1267+51C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.592+51C>T
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10762
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

11-18424612-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18424612
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18424612
    reference: chr 11
allele count: 3
allele frequency: 2.850464625733995e-5
allele num: 105246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*162+52G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.592+52G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*336+52G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.592+52G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.592+52G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*249+52G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.589+52G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.418+52G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1459+52G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.592+52G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-673G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.592+52G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.679+52G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*336+52G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1267+52G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.479+52G>A
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12555
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

11-18425205-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425205
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425205
    reference: chr 11
allele count: 2
allele frequency: 1.64766361299677e-5
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1268-36C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*337-36C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*337-36C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*163-36C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.593-36C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.593-36C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.419-36C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.680-36C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.593-36C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.593-36C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.590-36C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*250-36C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-80C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1460-36C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.593-36C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.480-36C>T
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

11-18425218-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425218
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425218
    reference: chr 11
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*163-23G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.419-23G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.680-23G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.593-23G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.590-23G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*250-23G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1268-23G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.593-23G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.593-23G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*337-23G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.480-23G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.593-23G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*337-23G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.593-23G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-67G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1460-23G>A
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

11-18425230-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425230
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425230
    reference: chr 11
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.680-11A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.593-11A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.419-11A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*250-11A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*163-11A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*337-11A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-55A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.593-11A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.590-11A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.480-11A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.593-11A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*337-11A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1268-11A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1460-11A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.593-11A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.593-11A>G
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-18425239-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425239
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425238
    reference: chr 11
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*163-1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*337-1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*337-1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.680-1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.593-1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.480-1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1460-1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.590-1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.593-1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-45delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.593-1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1268-1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.419-1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*250-1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.593-1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.593-1delG
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18011
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.680-1delG
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: AG
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

11-18425242-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425242
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425242
    reference: chr 11
allele count: 7
allele frequency: 5.766062602965403e-5
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.594G>C
  hgvsp: ENST00000379412.5:c.594G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*338G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-43G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.594G>C
  hgvsp: ENST00000396222.2:c.594G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1461G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.481G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.594G>C
  hgvsp: ENST00000227157.4:c.594G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.681G>C
  hgvsp: ENST00000540430.1:c.681G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*338G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.591G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1269G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*251G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.420G>C
  hgvsp: ENST00000430553.2:c.420G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.594G>C
  hgvsp: ENST00000542179.1:c.594G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*164G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.594G>C
  hgvsp: ENST00000422447.3:c.594G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22451
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.681G>C
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

11-18425247-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425247
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425247
    reference: chr 11
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.599T>C
  hgvsp: ENSP00000379524.2:p.Val200Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1274T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.486T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.599T>C
  hgvsp: ENSP00000227157.4:p.Val200Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*169T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.599T>C
  hgvsp: ENSP00000445331.1:p.Val200Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*343T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.686T>C
  hgvsp: ENSP00000445175.1:p.Val229Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*343T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.599T>C
  hgvsp: ENSP00000368722.5:p.Val200Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-38T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1466T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.425T>C
  hgvsp: ENSP00000406172.2:p.Val142Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.599T>C
  hgvsp: ENSP00000395337.3:p.Val200Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*256T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.596T>C
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val229Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

11-18425256-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425256
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425256
    reference: chr 11
allele count: 310
allele frequency: 2.55341581140965e-3
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.608G>C
  hgvsp: ENSP00000368722.5:p.Gly203Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*265G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1475G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*352G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*352G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1283G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*178G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.695G>C
  hgvsp: ENSP00000445175.1:p.Gly232Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.605G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.608G>C
  hgvsp: ENSP00000379524.2:p.Gly203Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.608G>C
  hgvsp: ENSP00000445331.1:p.Gly203Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.434G>C
  hgvsp: ENSP00000406172.2:p.Gly145Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-29G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.608G>C
  hgvsp: ENSP00000227157.4:p.Gly203Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.608G>C
  hgvsp: ENSP00000395337.3:p.Gly203Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.495G>C
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 6.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
hgvs: p.Gly232Ala
num of homozygotes: 3
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

11-18425258-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425258
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425258
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.697A>G
  hgvsp: ENSP00000445175.1:p.Met233Val
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.610A>G
  hgvsp: ENSP00000395337.3:p.Met204Val
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.610A>G
  hgvsp: ENSP00000379524.2:p.Met204Val
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.436A>G
  hgvsp: ENSP00000406172.2:p.Met146Val
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*354A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*354A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1285A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.610A>G
  hgvsp: ENSP00000445331.1:p.Met204Val
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*180A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.610A>G
  hgvsp: ENSP00000368722.5:p.Met204Val
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.607A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.497A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*267A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.610A>G
  hgvsp: ENSP00000227157.4:p.Met204Val
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.245-27A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1477A>G
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met233Val
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

11-18425285-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425285
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425283
    reference: chr 11
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*297_*298delCT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.637_638delCT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.466_467delCT
  hgvsp: ENSP00000406172.2:p.Leu156AlafsTer7
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*384_*385delCT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.527_528delCT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.640_641delCT
  hgvsp: ENSP00000368722.5:p.Leu214AlafsTer7
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1507_1508delCT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*210_*211delCT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*384_*385delCT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.640_641delCT
  hgvsp: ENSP00000445331.1:p.Leu214AlafsTer7
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1315_1316delCT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.640_641delCT
  hgvsp: ENSP00000379524.2:p.Leu214AlafsTer7
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.248_249delCT
  hgvsp: ENSP00000443362.1:p.Ser83CysfsTer5
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.640_641delCT
  hgvsp: ENSP00000395337.3:p.Leu214AlafsTer7
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.640_641delCT
  hgvsp: ENSP00000227157.4:p.Leu214AlafsTer7
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.727_728delCT
  hgvsp: ENSP00000445175.1:p.Leu243AlafsTer7
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu243AlafsTer7
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: ACT
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

11-18425295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425295
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425295
    reference: chr 11
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.255C>T
  hgvsp: ENST00000541097.1:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.473C>T
  hgvsp: ENSP00000406172.2:p.Pro158Leu
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.647C>T
  hgvsp: ENSP00000368722.5:p.Pro216Leu
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.644C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1322C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.647C>T
  hgvsp: ENSP00000445331.1:p.Pro216Leu
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*391C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.647C>T
  hgvsp: ENSP00000379524.2:p.Pro216Leu
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.734C>T
  hgvsp: ENSP00000445175.1:p.Pro245Leu
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1514C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.647C>T
  hgvsp: ENSP00000227157.4:p.Pro216Leu
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*304C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.534C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*391C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*217C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.647C>T
  hgvsp: ENSP00000395337.3:p.Pro216Leu
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro245Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

11-18425295-CAGATTTAGGGACTGATAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425295
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425277
    reference: chr 11
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsp: ENSP00000395337.3:p.Leu218_Asp223del
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsp: ENSP00000445331.1:p.Leu218_Asp223del
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsp: ENSP00000406172.2:p.Leu160_Asp165del
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsp: ENSP00000368722.5:p.Leu218_Asp223del
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsp: ENSP00000445175.1:p.Leu247_Asp252del
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsp: ENSP00000379524.2:p.Leu218_Asp223del
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsp: ENSP00000227157.4:p.Leu218_Asp223del
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: coding_sequence_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu247_Asp252del
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: CAGATTTAGGGACTGATAA
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

11-18425302-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425302
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425302
    reference: chr 11
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.654A>G
  hgvsp: ENST00000379412.5:c.654A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.654A>G
  hgvsp: ENST00000227157.4:c.654A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*224A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000440368
  ensembl transcript: ENST00000543695
  gene symbol: LDHA
  hgvsc: ENST00000543695.1:c.*311A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.654A>G
  hgvsp: ENST00000422447.3:c.654A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.654A>G
  hgvsp: ENST00000542179.1:c.654A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.741A>G
  hgvsp: ENST00000540430.1:c.741A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1329A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.262A>G
  hgvsp: ENSP00000443362.1:p.Arg88Gly
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.654A>G
  hgvsp: ENST00000396222.2:c.654A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*398A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*398A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.480A>G
  hgvsp: ENST00000430553.2:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1521A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.651A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.541A>G
  variant of: http://identifiers.org/hgnc/6535
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg88Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

11-18425312-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425312
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425312
    reference: chr 11
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*2A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.664A>G
  hgvsp: ENSP00000445331.1:p.Lys222Glu
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1339A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.664A>G
  hgvsp: ENSP00000227157.4:p.Lys222Glu
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.664A>G
  hgvsp: ENSP00000395337.3:p.Lys222Glu
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.490A>G
  hgvsp: ENSP00000406172.2:p.Lys164Glu
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*234A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.664A>G
  hgvsp: ENSP00000368722.5:p.Lys222Glu
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.664A>G
  hgvsp: ENSP00000379524.2:p.Lys222Glu
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1531A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.751A>G
  hgvsp: ENSP00000445175.1:p.Lys251Glu
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.661A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*408A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*408A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.551A>G
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys251Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

11-18425320-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425320
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425320
    reference: chr 11
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.672G>A
  hgvsp: ENST00000422447.3:c.672G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.759G>A
  hgvsp: ENST00000540430.1:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*416G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.669G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1347G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.559G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*242G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.672G>A
  hgvsp: ENST00000227157.4:c.672G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.672G>A
  hgvsp: ENST00000542179.1:c.672G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.672G>A
  hgvsp: ENST00000396222.2:c.672G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1539G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.498G>A
  hgvsp: ENST00000430553.2:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*416G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.672G>A
  hgvsp: ENST00000379412.5:c.672G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys253Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP

11-18425321-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425321
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425321
    reference: chr 11
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.673G>A
  hgvsp: ENSP00000227157.4:p.Glu225Lys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.673G>A
  hgvsp: ENSP00000368722.5:p.Glu225Lys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.673G>A
  hgvsp: ENSP00000379524.2:p.Glu225Lys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.560G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*243G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.670G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1348G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*417G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*417G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.673G>A
  hgvsp: ENSP00000395337.3:p.Glu225Lys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.673G>A
  hgvsp: ENSP00000445331.1:p.Glu225Lys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.499G>A
  hgvsp: ENSP00000406172.2:p.Glu167Lys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.760G>A
  hgvsp: ENSP00000445175.1:p.Glu254Lys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1540G>A
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu254Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

11-18425321-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425321
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425320
    reference: chr 11
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.675delA
  hgvsp: ENSP00000368722.5:p.Glu225AspfsTer17
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.675delA
  hgvsp: ENSP00000227157.4:p.Glu225AspfsTer20
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*13delA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.675delA
  hgvsp: ENSP00000445331.1:p.Glu225AspfsTer17
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.672delA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*419delA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.501delA
  hgvsp: ENSP00000406172.2:p.Glu167AspfsTer17
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.762delA
  hgvsp: ENSP00000445175.1:p.Glu254AspfsTer17
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.562delA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*245delA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1350delA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.675delA
  hgvsp: ENSP00000395337.3:p.Glu225AspfsTer17
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*419delA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.675delA
  hgvsp: ENSP00000379524.2:p.Glu225AspfsTer19
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1542delA
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu254AspfsTer17
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: GA
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

11-18425326-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425326
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425326
    reference: chr 11
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.765G>C
  hgvsp: ENSP00000445175.1:p.Gln255His
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1353G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*16G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.678G>C
  hgvsp: ENSP00000445331.1:p.Gln226His
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.504G>C
  hgvsp: ENSP00000406172.2:p.Gln168His
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*422G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000460405
  gene symbol: LDHA
  hgvsc: ENST00000460405.1:n.675G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.678G>C
  hgvsp: ENSP00000395337.3:p.Gln226His
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.678G>C
  hgvsp: ENSP00000379524.2:p.Gln226His
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.565G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.678G>C
  hgvsp: ENSP00000227157.4:p.Gln226His
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*248G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.678G>C
  hgvsp: ENSP00000368722.5:p.Gln226His
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1545G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*422G>C
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln255His
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

11-18425344-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425344
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425344
    reference: chr 11
allele count: 26
allele frequency: 2.142951338520375e-4
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1563G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+9G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*440G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.696G>C
  hgvsp: ENSP00000227157.4:p.Lys232Asn
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.696G>C
  hgvsp: ENSP00000395337.3:p.Lys232Asn
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.522G>C
  hgvsp: ENSP00000406172.2:p.Lys174Asn
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.783G>C
  hgvsp: ENSP00000445175.1:p.Lys261Asn
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.696G>C
  hgvsp: ENSP00000368722.5:p.Lys232Asn
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.696G>C
  hgvsp: ENSP00000445331.1:p.Lys232Asn
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1371G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*440G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.583G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*34G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*266G>C
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22548
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18081
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys261Asn
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

11-18425352-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425352
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425352
    reference: chr 11
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.591T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1379T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.704T>C
  hgvsp: ENSP00000445331.1:p.Val235Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.704T>C
  hgvsp: ENSP00000227157.4:p.Val235Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.791T>C
  hgvsp: ENSP00000445175.1:p.Val264Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+17T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.704T>C
  hgvsp: ENSP00000368722.5:p.Val235Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.704T>C
  hgvsp: ENSP00000395337.3:p.Val235Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*42T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.530T>C
  hgvsp: ENSP00000406172.2:p.Val177Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*448T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*274T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*448T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1571T>C
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val264Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

11-18425357-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425357
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425357
    reference: chr 11
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.709A>T
  hgvsp: ENSP00000395337.3:p.Ser237Cys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.709A>T
  hgvsp: ENSP00000445331.1:p.Ser237Cys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.535A>T
  hgvsp: ENSP00000406172.2:p.Ser179Cys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.709A>T
  hgvsp: ENSP00000227157.4:p.Arg237Trp
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*453A>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.796A>T
  hgvsp: ENSP00000445175.1:p.Ser266Cys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*279A>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.709A>T
  hgvsp: ENSP00000368722.5:p.Ser237Cys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*47A>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1576A>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1384A>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.596A>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+22A>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*453A>T
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser266Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

11-18425357-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425357
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425356
    reference: chr 11
allele count: 3
allele frequency: 2.475329218786098e-5
allele num: 121196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.710+1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.536+1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.710+1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441058
  ensembl transcript: ENST00000536528
  gene symbol: LDHA
  hgvsc: ENST00000536528.1:c.*280delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*454+1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.710+1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*454+1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.597+1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1385+1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+24delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.797+1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*48+1delG
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1577+1delG
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: AG
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

11-18425360-TAATA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425360
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425356
    reference: chr 11
allele count: 1
allele frequency: 8.257365570088519e-6
allele num: 121104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*454+6_*454+9delAAAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+29_687+32delAAAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.710+6_710+9delAAAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1577+6_1577+9delAAAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.797+6_797+9delAAAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.710+6_710+9delAAAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*454+6_*454+9delAAAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.597+6_597+9delAAAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*48+6_*48+9delAAAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1385+6_1385+9delAAAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.536+6_536+9delAAAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+6_710+9delAAAT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.710+6_710+9delAAAT
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.797+6_797+9delAAAT
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: TAATA
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

11-18425363-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425363
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425363
    reference: chr 11
allele count: 5
allele frequency: 4.130797574395664e-5
allele num: 121042
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.797+5T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1385+5T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*454+5T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*454+5T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1577+5T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.710+5T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.710+5T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+5T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+28T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.536+5T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*48+5T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.597+5T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.710+5T>C
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.797+5T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

11-18425367-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425367
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425367
    reference: chr 11
allele count: 31
allele frequency: 2.565163425734381e-4
allele num: 120850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*454+9T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1385+9T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.797+9T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1577+9T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*48+9T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*454+9T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.536+9T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+9T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.710+9T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+32T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.597+9T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.710+9T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.710+9T>A
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21945
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17762
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

11-18425372-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425372
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425372
    reference: chr 11
allele count: 1
allele frequency: 8.295863682367972e-6
allele num: 120542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.710+14C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1577+14C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*48+14C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1385+14C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.536+14C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+37C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.797+14C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*454+14C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+14C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.597+14C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.710+14C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.710+14C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*454+14C>G
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-18425374-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425374
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425374
    reference: chr 11
allele count: 1
allele frequency: 8.30827005200977e-6
allele num: 120362
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.797+16A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.536+16A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1385+16A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*454+16A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1577+16A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.710+16A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*454+16A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.710+16A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*48+16A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+16A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.597+16A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+39A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.710+16A>G
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

11-18425382-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425382
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425382
    reference: chr 11
allele count: 5
allele frequency: 4.186202277294039e-5
allele num: 119440
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+24A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.710+24A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*454+24A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.710+24A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*48+24A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.597+24A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.710+24A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*454+24A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.797+24A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.536+24A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+47A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1577+24A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1385+24A>G
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19206
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-18425399-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425399
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425399
    reference: chr 11
allele count: 5
allele frequency: 4.403191433150748e-5
allele num: 113554
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.710+41T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1385+41T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.797+41T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.710+41T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+41T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1577+41T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+64T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.536+41T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.710+41T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*454+41T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*454+41T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.597+41T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*48+41T>A
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12160
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9534
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

11-18425399-TTAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425399
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425396
    reference: chr 11
allele count: 2
allele frequency: 1.761276573260299e-5
allele num: 113554
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.597+44_597+46delCTA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.710+44_710+46delCTA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1577+44_1577+46delCTA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.710+44_710+46delCTA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1385+44_1385+46delCTA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.710+44_710+46delCTA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.536+44_536+46delCTA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+67_687+69delCTA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*454+44_*454+46delCTA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*454+44_*454+46delCTA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+44_710+46delCTA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*48+44_*48+46delCTA
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.797+44_797+46delCTA
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: TTAC
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

11-18425409-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18425409
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18425409
    reference: chr 11
allele count: 2
allele frequency: 1.870417477180907e-5
allele num: 106928
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.597+51T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+51T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*454+51T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.710+51T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.710+51T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1385+51T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*48+51T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*454+51T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.797+51T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+74T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.536+51T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.710+51T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1577+51T>C
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

11-18426945-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18426945
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18426945
    reference: chr 11
allele count: 1
allele frequency: 8.256820133430213e-6
allele num: 121112
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.711-51T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+1610T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1578-51T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*455-51T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+1587T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*49-51T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.537-51T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.798-51T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*455-51T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.711-51T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.711-51T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.598-51T>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1386-51T>G
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5909
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

11-18426950-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18426950
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18426950
    reference: chr 11
allele count: 3
allele frequency: 2.477005135657315e-5
allele num: 121114
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.711-46C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1578-46C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+1592C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.711-46C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.798-46C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.537-46C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*455-46C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1386-46C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*455-46C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*49-46C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.598-46C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+1615C>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.711-46C>G
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

11-18426954-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18426954
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18426954
    reference: chr 11
allele count: 2
allele frequency: 1.651118632873772e-5
allele num: 121130
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.798-42C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.711-42C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.537-42C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*455-42C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+1619C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.598-42C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+1596C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1578-42C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.711-42C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*49-42C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*455-42C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1386-42C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.711-42C>T
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

11-18426959-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18426959
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18426958
    reference: chr 11
allele count: 1
allele frequency: 8.254911672445104e-6
allele num: 121140
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+1606delT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.711-32delT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+1629delT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.798-32delT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1578-32delT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*455-32delT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.537-32delT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*455-32delT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*49-32delT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.711-32delT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.711-32delT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.598-32delT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1386-32delT
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: CT
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

11-18426961-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18426961
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18426961
    reference: chr 11
allele count: 2
allele frequency: 1.650982334489021e-5
allele num: 121140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+1626T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.537-35T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.598-35T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.798-35T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.711-35T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.711-35T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*49-35T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1578-35T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1386-35T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*455-35T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+1603T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.711-35T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*455-35T>A
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

11-18426975-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18426975
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18426975
    reference: chr 11
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.537-21C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.798-21C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1386-21C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.711-21C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*49-21C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1578-21C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*455-21C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.598-21C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*455-21C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.711-21C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+1617C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+1640C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.711-21C>T
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

11-18426977-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18426977
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18426977
    reference: chr 11
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.711-19A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1578-19A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.798-19A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*455-19A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1386-19A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.711-19A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*455-19A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*49-19A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+1619A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.711-19A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+1642A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.537-19A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.598-19A>G
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8055
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

11-18426988-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18426988
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18426988
    reference: chr 11
allele count: 5
allele frequency: 4.121603798470061e-5
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*49-8T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.598-8T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.798-8T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.711-8T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*455-8T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1386-8T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+1630T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.711-8T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.711-8T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*455-8T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1578-8T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+1653T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.537-8T>A
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5197
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.798-8T>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

11-18426997-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18426997
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18426997
    reference: chr 11
allele count: 3
allele frequency: 2.472147142197904e-5
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1579G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.799G>A
  hgvsp: ENSP00000445175.1:p.Ala267Thr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.599G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1387G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.538G>A
  hgvsp: ENSP00000406172.2:p.Ala180Thr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.712G>A
  hgvsp: ENSP00000395337.3:p.Ala238Thr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.712G>A
  hgvsp: ENSP00000445331.1:p.Ala238Thr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*456G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.712G>A
  hgvsp: ENSP00000368722.5:p.Ala238Thr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*456G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+1662G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+1639G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*50G>A
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala267Thr
num of homozygotes: 1
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

11-18427002-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18427002
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18427002
    reference: chr 11
allele count: 2
allele frequency: 1.647989452867502e-5
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.804T>C
  hgvsp: ENST00000540430.1:c.804T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1584T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.717T>C
  hgvsp: ENST00000422447.3:c.717T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.710+1644T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1392T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.717T>C
  hgvsp: ENST00000379412.5:c.717T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.543T>C
  hgvsp: ENST00000430553.2:c.543T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*461T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*55T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.604T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*461T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+1667T>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.717T>C
  hgvsp: ENST00000542179.1:c.717T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8055
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5197
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr268Tyr
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

11-18427017-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18427017
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18427017
    reference: chr 11
allele count: 8
allele frequency: 6.590002965501334e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.711-1647C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.732C>T
  hgvsp: ENST00000542179.1:c.732C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.558C>T
  hgvsp: ENST00000430553.2:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.819C>T
  hgvsp: ENST00000540430.1:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.732C>T
  hgvsp: ENST00000379412.5:c.732C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*476C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.732C>T
  hgvsp: ENST00000422447.3:c.732C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.619C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1407C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*70C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*476C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+1682C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1599C>T
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu273Leu
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

11-18427027-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18427027
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18427027
    reference: chr 11
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.742A>G
  hgvsp: ENSP00000368722.5:p.Thr248Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1609A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.568A>G
  hgvsp: ENSP00000406172.2:p.Thr190Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.742A>G
  hgvsp: ENSP00000445331.1:p.Thr248Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.829A>G
  hgvsp: ENSP00000445175.1:p.Thr277Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.711-1637A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.742A>G
  hgvsp: ENSP00000395337.3:p.Thr248Ala
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+1692A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*486A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1417A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*486A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.629A>G
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*80A>G
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr277Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

11-18427032-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18427032
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18427032
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*491C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1614C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.711-1632C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1422C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.747C>T
  hgvsp: ENST00000379412.5:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.573C>T
  hgvsp: ENST00000430553.2:c.573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.634C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.747C>T
  hgvsp: ENST00000542179.1:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.834C>T
  hgvsp: ENST00000540430.1:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*491C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*85C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.747C>T
  hgvsp: ENST00000422447.3:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+1697C>T
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser278Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

11-18427036-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18427036
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18427036
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*89G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.751G>A
  hgvsp: ENSP00000445331.1:p.Ala251Thr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*495G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1618G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.751G>A
  hgvsp: ENSP00000395337.3:p.Ala251Thr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000441699
  ensembl transcript: ENST00000486690
  gene symbol: LDHA
  hgvsc: ENST00000486690.2:c.*495G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.577G>A
  hgvsp: ENSP00000406172.2:p.Ala193Thr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.838G>A
  hgvsp: ENSP00000445175.1:p.Ala280Thr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.638G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.751G>A
  hgvsp: ENSP00000368722.5:p.Ala251Thr
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.711-1628G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1426G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+1701G>A
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala280Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

11-18427044-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18427044
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18427042
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.851_852delCT
  hgvsp: ENSP00000445175.1:p.Ser284CysfsTer13
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*508_*509delCT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1439_1440delCT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+1714_687+1715delCT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.764_765delCT
  hgvsp: ENSP00000368722.5:p.Ser255CysfsTer13
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.651_652delCT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1631_1632delCT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.764_765delCT
  hgvsp: ENSP00000395337.3:p.Ser255CysfsTer13
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.590_591delCT
  hgvsp: ENSP00000406172.2:p.Ser197CysfsTer13
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.764_765delCT
  hgvsp: ENSP00000445331.1:p.Ser255CysfsTer13
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.711-1615_711-1614delCT
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*102_*103delCT
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser284CysfsTer13
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: ACT
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

11-18427050-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18427050
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18427050
    reference: chr 11
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.765T>A
  hgvsp: ENST00000422447.3:c.765T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*103T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.687+1715T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.852T>A
  hgvsp: ENST00000540430.1:c.852T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.711-1614T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*509T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1440T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.652T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1632T>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.591T>A
  hgvsp: ENST00000430553.2:c.591T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.765T>A
  hgvsp: ENST00000379412.5:c.765T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.765T>A
  hgvsp: ENST00000542179.1:c.765T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser284Ser
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

11-18427062-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18427062
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18427062
    reference: chr 11
allele count: 117
allele frequency: 9.636926726410122e-4
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.711-1602G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.664G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.777G>A
  hgvsp: ENST00000379412.5:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1644G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.688-1724G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*115G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.864G>A
  hgvsp: ENST00000540430.1:c.864G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.777G>A
  hgvsp: ENST00000422447.3:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.777G>A
  hgvsp: ENST00000542179.1:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.603G>A
  hgvsp: ENST00000430553.2:c.603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1452G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*521G>A
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
hgvs: p.Leu288Leu
num of homozygotes: 2
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

11-18427077-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18427077
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18427077
    reference: chr 11
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*130G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.792G>C
  hgvsp: ENSP00000368722.5:p.Met264Ile
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*536G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.688-1709G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.711-1587G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.879G>C
  hgvsp: ENSP00000445175.1:p.Met293Ile
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.792G>C
  hgvsp: ENSP00000395337.3:p.Met264Ile
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1659G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.679G>C
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.792G>C
  hgvsp: ENSP00000445331.1:p.Met264Ile
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.618G>C
  hgvsp: ENSP00000406172.2:p.Met206Ile
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1467G>C
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8037
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met293Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ

11-18427084-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18427084
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18427084
    reference: chr 11
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.799C>T
  hgvsp: ENSP00000395337.3:p.Leu267Phe
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*137C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.625C>T
  hgvsp: ENSP00000406172.2:p.Leu209Phe
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.799C>T
  hgvsp: ENSP00000368722.5:p.Leu267Phe
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*543C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1666C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.799C>T
  hgvsp: ENSP00000445331.1:p.Leu267Phe
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.686C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.711-1580C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.688-1702C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1474C>T
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.886C>T
  hgvsp: ENSP00000445175.1:p.Leu296Phe
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8037
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu296Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

11-18427088-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18427088
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18427088
    reference: chr 11
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.629G>A
  hgvsp: ENSP00000406172.2:p.Arg210Lys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*547G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.690G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.711-1576G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.890G>A
  hgvsp: ENSP00000445175.1:p.Arg297Lys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*141G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1478G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.803G>A
  hgvsp: ENSP00000368722.5:p.Arg268Lys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.803G>A
  hgvsp: ENSP00000395337.3:p.Arg268Lys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.803G>A
  hgvsp: ENSP00000445331.1:p.Arg268Lys
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1670G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.688-1698G>A
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8037
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg297Lys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

11-18427095-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18427095
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 18427095
    reference: chr 11
allele count: 4
allele frequency: 3.295001482750667e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000379524
  ensembl transcript: ENST00000396222
  gene symbol: LDHA
  hgvsc: ENST00000396222.2:c.688-1691G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000375710
  gene symbol: LDHA
  hgvsc: ENST00000375710.3:n.1677G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445175
  ensembl transcript: ENST00000540430
  gene symbol: LDHA
  hgvsc: ENST00000540430.1:c.897G>A
  hgvsp: ENST00000540430.1:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000442637
  ensembl transcript: ENST00000545215
  gene symbol: LDHA
  hgvsc: ENST00000545215.1:c.*554G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000445331
  ensembl transcript: ENST00000542179
  gene symbol: LDHA
  hgvsc: ENST00000542179.1:c.810G>A
  hgvsp: ENST00000542179.1:c.810G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000443362
  ensembl transcript: ENST00000541097
  gene symbol: LDHA
  hgvsc: ENST00000541097.1:c.*148G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000227157
  ensembl transcript: ENST00000227157
  gene symbol: LDHA
  hgvsc: ENST00000227157.4:c.711-1569G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000395337
  ensembl transcript: ENST00000422447
  gene symbol: LDHA
  hgvsc: ENST00000422447.3:c.810G>A
  hgvsp: ENST00000422447.3:c.810G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000537296
  gene symbol: LDHA
  hgvsc: ENST00000537296.1:n.1485G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134333
  ensembl transcript: ENST00000538451
  gene symbol: LDHA
  hgvsc: ENST00000538451.1:n.697G>A
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000406172
  ensembl transcript: ENST00000430553
  gene symbol: LDHA
  hgvsc: ENST00000430553.2:c.636G>A
  hgvsp: ENST00000430553.2:c.636G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134333
  ensembl protein: ENSP00000368722
  ensembl transcript: ENST00000379412
  gene symbol: LDHA
  hgvsc: ENST00000379412.5:c.810G>A
  hgvsp: ENST00000379412.5:c.810G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8038
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val299Val
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 1039
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12838
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 582
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 869
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1545
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 241
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16874
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 298
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9673
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1291
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 431
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3019
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3389
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4455
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9175
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2309
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12596
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23534
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504981488727689e-5
allele num: 66446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.307e0

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

MQ
type: SiteQuality
SIO_000300: 4.602e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.064e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.99e-1

FS
type: SiteQuality
SIO_000300: 9.475e0

DP
type: SiteQuality
SIO_000300: 2.360671e6

GenotypeDepth
all individuals: 12798
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1039
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 276
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 503
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 582
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16839
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2067
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9665
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1545
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 869
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2068
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 945
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 298
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3379
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12590
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23433
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4440
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3007
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.044e0

VQSLOD
type: SiteQuality
SIO_000300: -3.173e0

QD
type: SiteQuality
SIO_000300: 2.045e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.054e0

FS
type: SiteQuality
SIO_000300: 4.688e0

DP
type: SiteQuality
SIO_000300: 2.357914e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.741e0

MQ
type: SiteQuality
SIO_000300: 4.009e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.741e0

GenotypeDepth
all individuals: 582
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 825
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1039
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 284
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2045
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5366
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2068
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 298
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3154
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 945
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 431
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3005
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9150
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3379
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23385
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12589
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4439
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.859988168014199e-5
allele num: 10142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.822e0

MQRankSum
type: SiteQuality
SIO_000300: -7.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.1e-1

DP
type: SiteQuality
SIO_000300: 2.3572e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.273e0

FS
type: SiteQuality
SIO_000300: 3.02e0

MQ
type: SiteQuality
SIO_000300: 5.337e1

QD
type: SiteQuality
SIO_000300: 2.885e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.466e0

GenotypeDepth
all individuals: 290
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 12026
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5286
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1282
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 582
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9442
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 558
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 627
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3129
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1529
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2053
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1034
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1749
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 823
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 431
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12557
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2924
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8748
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21919
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2299
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4369
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3345
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523090045083465e-5
allele num: 65656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.318115e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

MQRankSum
type: SiteQuality
SIO_000300: -1.806e0

VQSLOD
type: SiteQuality
SIO_000300: -9.256e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

MQ
type: SiteQuality
SIO_000300: 5.433e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

QD
type: SiteQuality
SIO_000300: 1.627e1

GenotypeDepth
all individuals: 823
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 868
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1282
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 668
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 431
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 943
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 344
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5234
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1735
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2051
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15516
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2864
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3326
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4326
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20624
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12553
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8388
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2294
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
SIO_000300: 2.290576e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.45e0

VQSLOD
type: SiteQuality
SIO_000300: -2.008e0

MQ
type: SiteQuality
SIO_000300: 5.219e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeDepth
all individuals: 943
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14412
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3116
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1282
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10240
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 298
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2049
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 431
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 823
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 868
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 582
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2628
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18772
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12552
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 727
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3284
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2167
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7479
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2286
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.044277360066834e-4
allele num: 9576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.253576e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.491e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.014e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.549e0

QD
type: SiteQuality
SIO_000300: 8.56e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 4.926e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.24e-1

GenotypeDepth
all individuals: 4372
bin: 4.25e1
variant carriers: 4231

GenotypeDepth
all individuals: 372
bin: 2.5e0
variant carriers: 170

GenotypeDepth
all individuals: 11294
bin: 2.75e1
variant carriers: 9578

GenotypeDepth
all individuals: 1054
bin: 6.75e1
variant carriers: 1008

GenotypeDepth
all individuals: 6930
bin: 3.75e1
variant carriers: 6657

GenotypeDepth
all individuals: 10302
bin: 3.25e1
variant carriers: 9212

GenotypeDepth
all individuals: 869
bin: 7.25e1
variant carriers: 842

GenotypeDepth
all individuals: 769
bin: 7.75e1
variant carriers: 735

GenotypeDepth
all individuals: 7365
bin: 2.25e1
variant carriers: 6920

GenotypeDepth
all individuals: 1882
bin: 5.25e1
variant carriers: 1790

GenotypeDepth
all individuals: 373
bin: 8.75e1
variant carriers: 364

GenotypeQuality
all individuals: 1109
bin: 2.25e1
variant carriers: 272

GenotypeQuality
all individuals: 414
bin: 4.25e1
variant carriers: 351

GenotypeQuality
all individuals: 438
bin: 2.75e1
variant carriers: 199

GenotypeQuality
all individuals: 2137
bin: 7.75e1
variant carriers: 2026

GenotypeQuality
all individuals: 2201
bin: 6.75e1
variant carriers: 1744

GenotypeQuality
all individuals: 3871
bin: 6.25e1
variant carriers: 1390

GenotypeQuality
all individuals: 738
bin: 5.75e1
variant carriers: 670

GenotypeQuality
all individuals: 38810
bin: 9.75e1
variant carriers: 38272

GenotypeQuality
all individuals: 1059
bin: 7.25e1
variant carriers: 964

GenotypeQuality
all individuals: 326
bin: 2.5e0
variant carriers: 45

GenotypeQuality
all individuals: 788
bin: 4.75e1
variant carriers: 741

GenotypeQuality
all individuals: 310
bin: 7.5e0
variant carriers: 137

GenotypeQuality
all individuals: 688
bin: 3.25e1
variant carriers: 374

GenotypeQuality
all individuals: 272
bin: 1.75e1
variant carriers: 237

GenotypeQuality
all individuals: 2160
bin: 9.25e1
variant carriers: 2108

GenotypeQuality
all individuals: 176
bin: 1.25e1
variant carriers: 117

GenotypeQuality
all individuals: 1184
bin: 8.75e1
variant carriers: 1156

GenotypeQuality
all individuals: 1047
bin: 5.25e1
variant carriers: 991

GenotypeQuality
all individuals: 2188
bin: 8.25e1
variant carriers: 2096

GenotypeQuality
all individuals: 654
bin: 3.75e1
variant carriers: 490

Latino
type: Population
allele count: 8333
allele frequency: 7.326358361174609e-1
allele num: 11374
num of homozygotes: 3050

Other
type: Population
allele count: 648
allele frequency: 7.313769751693002e-1
allele num: 886
num of homozygotes: 239

South Asian
type: Population
allele count: 12312
allele frequency: 7.477225798615329e-1
allele num: 16466
num of homozygotes: 4627

European (Finnish)
type: Population
allele count: 5207
allele frequency: 7.918187347931873e-1
allele num: 6576
num of homozygotes: 2044

African
type: Population
allele count: 4395
allele frequency: 4.744170984455959e-1
allele num: 9264
num of homozygotes: 1021

European (Non-Finnish)
type: Population
allele count: 45831
allele frequency: 7.12192317255097e-1
allele num: 64352
num of homozygotes: 16297

East Asian
type: Population
allele count: 5566
allele frequency: 6.615165200855717e-1
allele num: 8414
num of homozygotes: 1821

MQ
type: SiteQuality
SIO_000300: 5.295e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.482e0

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.03e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 2.106636e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e-1

QD
type: SiteQuality
SIO_000300: 2.621e1

GenotypeDepth
all individuals: 3775
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2440
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7789
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 94
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9765
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 524
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3407
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10209
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3829
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6017
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3626
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3965
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 746
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20658
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.13363995594999e-4
allele num: 61748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11034
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.23e0

DP
type: SiteQuality
SIO_000300: 1.42656e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

MQ
type: SiteQuality
SIO_000300: 5.05e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.211e0

QD
type: SiteQuality
SIO_000300: 1.261e1

GenotypeDepth
all individuals: 215
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9765
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 14326
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1221
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 524
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1172
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 94
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7789
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6017
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20658
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3829
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3626
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10209
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3965
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 276
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3407
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.547987616099071e-4
allele num: 6460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.619485651357129e-5
allele num: 61748
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.05e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

VQSLOD
type: SiteQuality
SIO_000300: 5.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.211e0

DP
type: SiteQuality
SIO_000300: 1.42656e6

GenotypeDepth
all individuals: 11899
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2967
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13611
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 350
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2318
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 524
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1219
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 94
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1542
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2981
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10244
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7041
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3957
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17070
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3957
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 371
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5120
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.26072779444372e-5
allele num: 61336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

DP
type: SiteQuality
SIO_000300: 1.379396e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.67e-1

QD
type: SiteQuality
SIO_000300: 1.612e1

VQSLOD
type: SiteQuality
SIO_000300: -8.003e-1

MQ
type: SiteQuality
SIO_000300: 5.365e1

GenotypeDepth
all individuals: 1535
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1259
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3717
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7499
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 128
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 524
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 802
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2807
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8001
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3957
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 826
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9522
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7228
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10167
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4216
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2275
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3240
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.663229326059477e-5
allele num: 60124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10756
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 1.311441e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 5.685e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.184e0

QD
type: SiteQuality
SIO_000300: 1.334e1

GenotypeDepth
all individuals: 7170
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1266
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3860
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16290
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2096
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 94
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13033
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 524
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4662
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1533
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3537
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2953
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2250
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7405
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1825
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4246
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9491
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3956
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 187
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8056
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9602
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.664391997603276e-5
allele num: 60082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e0

MQ
type: SiteQuality
SIO_000300: 5.593e1

VQSLOD
type: SiteQuality
SIO_000300: -1.619e0

QD
type: SiteQuality
SIO_000300: 1.933e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

DP
type: SiteQuality
SIO_000300: 1.304951e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeDepth
all individuals: 107
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4881
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 1508
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 94
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 524
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15794
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 12545
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3957
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7740
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3512
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5589
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7254
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2610
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8084
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4197
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1826
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3599
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3833
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.821253191907288e-5
allele num: 10182
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.34698275862069e-4
allele num: 7424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57332
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.363e1

VQSLOD
type: SiteQuality
SIO_000300: -5.283e-1

MQ
type: SiteQuality
SIO_000300: 5.446e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

FS
type: SiteQuality
SIO_000300: 6.635e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

DP
type: SiteQuality
SIO_000300: 1.26648e6

GenotypeDepth
all individuals: 2827
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1212
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 94
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5483
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15734
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 107
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10836
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4951
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5591
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4179
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7756
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6843
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3516
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1197
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3956
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3015
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3246
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3716
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8085
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.361323155216285e-5
allele num: 15720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8064
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.5106196243637e-5
allele num: 56970
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.629e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

FS
type: SiteQuality
SIO_000300: 4.262e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-1

DP
type: SiteQuality
SIO_000300: 1.264315e6

MQ
type: SiteQuality
SIO_000300: 5.322e1

VQSLOD
type: SiteQuality
SIO_000300: -1.629e0

QD
type: SiteQuality
SIO_000300: 1.054e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

GenotypeDepth
all individuals: 465
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1043
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1618
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18008
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 648
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2414
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 325
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1113
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 960
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9434
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9375
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34078
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2239
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.135e1

FS
type: SiteQuality
SIO_000300: 1.4478e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.108e0

VQSLOD
type: SiteQuality
SIO_000300: -1.064e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

DP
type: SiteQuality
SIO_000300: 2.174902e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.23e-1

GenotypeDepth
all individuals: 811
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 959
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1237
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22437
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 465
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3684
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1619
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 647
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 254
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5458
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9435
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34112
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 2.175134e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.272e0

VQSLOD
type: SiteQuality
SIO_000300: 8.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.618e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

GenotypeDepth
all individuals: 3690
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1621
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 959
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1113
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 254
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18010
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 325
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22444
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2415
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 647
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34126
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9375
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9435
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 936
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.26e0

MQRankSum
type: SiteQuality
SIO_000300: -5.35e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

FS
type: SiteQuality
SIO_000300: 1.1214e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e-1

DP
type: SiteQuality
SIO_000300: 2.175213e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeDepth
all individuals: 1113
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1043
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 254
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1237
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22449
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 325
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 958
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 647
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34132
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9376
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9434
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 613
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.12e-1

QD
type: SiteQuality
SIO_000300: 1.583e1

MQRankSum
type: SiteQuality
SIO_000300: 7.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.178e0

DP
type: SiteQuality
SIO_000300: 2.175276e6

GenotypeDepth
all individuals: 3691
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 810
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2414
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1114
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5458
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 254
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18010
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1237
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1617
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 326
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1044
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 648
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 958
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9435
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2241
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9376
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 7
allele frequency: 6.728181468665898e-4
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.175745e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.375e0

MQ
type: SiteQuality
SIO_000300: 5.908e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-2

FS
type: SiteQuality
SIO_000300: 1.777e0

QD
type: SiteQuality
SIO_000300: 1.053e1

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

GenotypeDepth
all individuals: 958
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5459
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3692
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1618
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 466
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 647
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1237
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18014
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1113
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 810
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34139
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9431
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9375
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.709e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 1.512e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

DP
type: SiteQuality
SIO_000300: 2.175079e6

GenotypeDepth
all individuals: 22447
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5433
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1228
bin: 9.75e1
variant carriers: 199

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 266
bin: 8.75e1
variant carriers: 18

GenotypeDepth
all individuals: 939
bin: 6.25e1
variant carriers: 5

GenotypeDepth
all individuals: 1198
bin: 5.25e1
variant carriers: 4

GenotypeDepth
all individuals: 2377
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1571
bin: 4.75e1
variant carriers: 4

GenotypeDepth
all individuals: 469
bin: 7.75e1
variant carriers: 11

GenotypeDepth
all individuals: 652
bin: 7.25e1
variant carriers: 14

GenotypeDepth
all individuals: 1079
bin: 5.75e1
variant carriers: 7

GenotypeDepth
all individuals: 334
bin: 8.25e1
variant carriers: 13

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2515
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9378
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9448
bin: 9.75e1
variant carriers: 307

GenotypeQuality
all individuals: 34135
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 265
allele frequency: 2.289219073946095e-2
allele num: 11576
num of homozygotes: 3

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.405286343612335e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 2.996793431028799e-4
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 18
allele frequency: 2.721499848805564e-3
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

QD
type: SiteQuality
SIO_000300: 1.244e1

VQSLOD
type: SiteQuality
SIO_000300: 5.74e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.09e-2

DP
type: SiteQuality
SIO_000300: 2.191116e6

GenotypeDepth
all individuals: 1197
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22591
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3714
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 249
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1031
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 458
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 639
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 783
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1569
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34339
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2247
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9444
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9153
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.167567e6

FS
type: SiteQuality
SIO_000300: 7.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 1.387e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.69e-1

GenotypeDepth
all individuals: 639
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1568
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1033
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 22585
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 249
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2382
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1198
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1072
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9441
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34341
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2522
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9152
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.944e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.994e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

MQ
type: SiteQuality
SIO_000300: 6.071e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

DP
type: SiteQuality
SIO_000300: 2.167666e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

GenotypeDepth
all individuals: 1072
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18107
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1031
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 933
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 458
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22590
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2382
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 250
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1197
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9151
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9443
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.167508e6

QD
type: SiteQuality
SIO_000300: 4.74e0

MQRankSum
type: SiteQuality
SIO_000300: 4.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.096e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.31e-1

GenotypeDepth
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2382
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1072
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5455
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 933
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1197
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9443
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9151
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.096e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

DP
type: SiteQuality
SIO_000300: 2.167508e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

QD
type: SiteQuality
SIO_000300: 4.74e0

GenotypeDepth
all individuals: 1568
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 639
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1197
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5458
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 18107
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 250
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 458
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1031
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9445
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9150
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2522
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 2.167413e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.97e0

QD
type: SiteQuality
SIO_000300: 1.501e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

GenotypeDepth
all individuals: 1072
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 250
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 783
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3701
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18109
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22597
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34335
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9148
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9444
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2519
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.843e0

QD
type: SiteQuality
SIO_000300: 1.554e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.64e0

DP
type: SiteQuality
SIO_000300: 2.167143e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1031
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22587
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 638
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 783
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1567
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1072
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9147
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34328
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.144e1

FS
type: SiteQuality
SIO_000300: 1.373e0

DP
type: SiteQuality
SIO_000300: 2.166931e6

GenotypeDepth
all individuals: 638
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 932
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1073
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1197
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 783
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1032
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9438
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9146
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.963e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.05e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

DP
type: SiteQuality
SIO_000300: 2.166925e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 9.470000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeDepth
all individuals: 5453
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3706
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1567
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1032
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 932
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 457
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9146
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9438
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.963e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.68e-1

DP
type: SiteQuality
SIO_000300: 2.166925e6

QD
type: SiteQuality
SIO_000300: 9.470000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.05e-1

GenotypeDepth
all individuals: 5451
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18104
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 457
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1032
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 932
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 638
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 782
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2513
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9433
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9144
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34331
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

QD
type: SiteQuality
SIO_000300: 1.188e1

MQ
type: SiteQuality
SIO_000300: 5.415e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 4.283e0

DP
type: SiteQuality
SIO_000300: 2.166752e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.346e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.736e0

GenotypeDepth
all individuals: 3692
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 934
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2367
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 5441
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 251
bin: 8.75e1
variant carriers: 3

GenotypeDepth
all individuals: 780
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34298
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9135
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1430
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2230
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9396
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2506
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 2.500961908426318e-3
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

MQRankSum
type: SiteQuality
SIO_000300: -1.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.468e1

FS
type: SiteQuality
SIO_000300: 3.978e0

DP
type: SiteQuality
SIO_000300: 2.165084e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

GenotypeDepth
all individuals: 1196
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 636
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 22480
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5431
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 188
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1557
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2493
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9376
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34202
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9105
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.771e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.823e0

MQRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.160695e6

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e0

VQSLOD
type: SiteQuality
SIO_000300: 4.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.238e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2351
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 637
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1026
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 456
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 776
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9102
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9348
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34109
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.016e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

DP
type: SiteQuality
SIO_000300: 2.157678e6

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 1.339e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 1.212e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeDepth
all individuals: 3691
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22407
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1195
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 637
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 776
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1026
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9102
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 34109
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9348
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.596053997923157e-4
allele num: 11556
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

FS
type: SiteQuality
SIO_000300: 1.212e0

MQ
type: SiteQuality
SIO_000300: 6.016e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.157678e6

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.18e0

QD
type: SiteQuality
SIO_000300: 1.339e1

GenotypeDepth
all individuals: 456
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1064
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 929
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 776
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1026
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1199
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1553
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9297
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33970
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2189
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9090
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 596
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2447
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.153781e6

QD
type: SiteQuality
SIO_000300: 1.381e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.031e0

MQ
type: SiteQuality
SIO_000300: 5.156e1

FS
type: SiteQuality
SIO_000300: 5.197e0

MQRankSum
type: SiteQuality
SIO_000300: -7.283e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeDepth
all individuals: 102
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 929
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3655
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22237
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17887
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33859
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9089
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.031772980839195e-4
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e-1

DP
type: SiteQuality
SIO_000300: 2.151099e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 4.934e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeDepth
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1061
bin: 5.75e1
variant carriers: 2

GenotypeDepth
all individuals: 2320
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2416
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9097
bin: 9.75e1
variant carriers: 31

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33391
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9191
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012683397101799e-5
allele num: 66386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 29
allele frequency: 3.370525337052534e-3
allele num: 8604
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 2.141924e6

FS
type: SiteQuality
SIO_000300: 1.711e0

QD
type: SiteQuality
SIO_000300: 1.251e1

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.65e-1

GenotypeDepth
all individuals: 1529
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5329
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17544
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9054
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9057
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32593
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.080505898090721e-5
allele num: 16446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

DP
type: SiteQuality
SIO_000300: 2.125545e6

FS
type: SiteQuality
SIO_000300: 1.871e0

QD
type: SiteQuality
SIO_000300: 1.381e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.46e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.848e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.503e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e0

GenotypeDepth
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1059
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 927
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8975
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2304
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9054
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2108
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32187
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2363
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513225591671206e-5
allele num: 66084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.125e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

MQRankSum
type: SiteQuality
SIO_000300: 8.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-2

QD
type: SiteQuality
SIO_000300: 1.849e1

DP
type: SiteQuality
SIO_000300: 2.115828e6

VQSLOD
type: SiteQuality
SIO_000300: 2.23e-1

GenotypeDepth
all individuals: 69
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2234
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 318
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29236
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9039
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4938
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8326
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1992
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.936808846761453e-4
allele num: 10128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65560
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.59e0

DP
type: SiteQuality
SIO_000300: 2.051578e6

QD
type: SiteQuality
SIO_000300: 1.409e1

FS
type: SiteQuality
SIO_000300: 3.729e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.53e-1

GenotypeDepth
all individuals: 456
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 635
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7546
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 554
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12153
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4637
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9021
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 8281
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5220
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2005
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.306760847628658e-4
allele num: 7928
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62068
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

FS
type: SiteQuality
SIO_000300: 5.733e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.428e0

MQ
type: SiteQuality
SIO_000300: 5.836e1

QD
type: SiteQuality
SIO_000300: 6.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.021e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

DP
type: SiteQuality
SIO_000300: 1.729164e6

GenotypeDepth
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 635
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 771
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1052
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2005
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1585
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12153
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5220
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8281
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4637
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9021
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.611136173229361e-5
allele num: 62068
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9120
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.317917614354308e-5
allele num: 15828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

FS
type: SiteQuality
SIO_000300: 5.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.729164e6

MQ
type: SiteQuality
SIO_000300: 5.836e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.021e0

QD
type: SiteQuality
SIO_000300: 6.29e0

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.428e0

GenotypeDepth
all individuals: 1026
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11376
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 2537
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7683
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5378
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5320
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5369
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2858
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2837
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 395
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2632
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4167
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2702
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5004
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9016
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.579813133307015e-5
allele num: 15198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.715089356155456e-5
allele num: 58306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7026
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.425e1

MQRankSum
type: SiteQuality
SIO_000300: -1.271e0

VQSLOD
type: SiteQuality
SIO_000300: -2.651e0

DP
type: SiteQuality
SIO_000300: 1.664011e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.302e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

GenotypeDepth
all individuals: 292
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2649
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4377
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54684
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.744689144416293e-5
allele num: 10262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.144e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

QD
type: SiteQuality
SIO_000300: 1.995e1

FS
type: SiteQuality
SIO_000300: 2.66e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.372e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.977e0

DP
type: SiteQuality
SIO_000300: 4.191759e6

GenotypeDepth
all individuals: 4963
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2648
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4378
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5705
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54687
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.500180007200288e-5
allele num: 66664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

DP
type: SiteQuality
SIO_000300: 4.19267e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.46e-1

FS
type: SiteQuality
SIO_000300: 1.677e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.405e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-1

GenotypeDepth
all individuals: 3542
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1155
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 838
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54689
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 397
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.193754e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.53e-1

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.676e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.023e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

FS
type: SiteQuality
SIO_000300: 5.604e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

GenotypeDepth
all individuals: 2648
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1531
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3825
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2676
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54690
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.188e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

QD
type: SiteQuality
SIO_000300: 8.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.939e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.870000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 4.194864e6

GenotypeDepth
all individuals: 8054
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5705
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5893
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2650
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 684
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54691
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729804532087874e-4
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.189e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.223e0

FS
type: SiteQuality
SIO_000300: 3.192e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.45e-1

DP
type: SiteQuality
SIO_000300: 4.195141e6

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

GenotypeDepth
all individuals: 2649
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8055
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3542
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5196
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54694
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 409
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-2

QD
type: SiteQuality
SIO_000300: 1.445e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.84e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

FS
type: SiteQuality
SIO_000300: 1.5894e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.026e0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

DP
type: SiteQuality
SIO_000300: 4.197833e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

GenotypeDepth
all individuals: 1937
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5893
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5705
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2678
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54695
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 695
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.365e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.198133e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8057
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 4377
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4963
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5909
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1143
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1811
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54697
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817520901490367e-4
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.97e0

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.297e1

DP
type: SiteQuality
SIO_000300: 4.199563e6

GenotypeDepth
all individuals: 1152
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4378
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1931
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 5706
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5196
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2648
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5894
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8056
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 960
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54697
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496268097479092e-5
allele num: 66722
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.777e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.99e-1

FS
type: SiteQuality
SIO_000300: 6.44e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 4.19997e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.585e-1

GenotypeDepth
all individuals: 3543
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 4378
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2677
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5707
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2648
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54699
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312673450508788e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.633e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 6.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 4.200123e6

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 1292
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1577
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8057
bin: 9.75e1
variant carriers: 4

GenotypeDepth
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5910
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54697
bin: 9.75e1
variant carriers: 8

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.845548152634767e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.181e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

FS
type: SiteQuality
SIO_000300: 1.127e0

MQ
type: SiteQuality
SIO_000300: 5.996e1

VQSLOD
type: SiteQuality
SIO_000300: 3.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.118e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

DP
type: SiteQuality
SIO_000300: 4.201072e6

GenotypeDepth
all individuals: 8055
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2677
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4377
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3543
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5710
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54697
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.16e0

DP
type: SiteQuality
SIO_000300: 4.200663e6

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 3.221e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

QD
type: SiteQuality
SIO_000300: 1.451e1

GenotypeDepth
all individuals: 1941
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5196
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4963
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4377
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3543
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54697
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1867
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.298e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 4.200713e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.79e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

FS
type: SiteQuality
SIO_000300: 4.233e0

VQSLOD
type: SiteQuality
SIO_000300: 5.82e-1

QD
type: SiteQuality
SIO_000300: 1.308e1

GenotypeDepth
all individuals: 1148
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2647
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3543
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5197
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1942
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54697
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

DP
type: SiteQuality
SIO_000300: 4.200699e6

VQSLOD
type: SiteQuality
SIO_000300: 5.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 1.445e1

FS
type: SiteQuality
SIO_000300: 3.769e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.404e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.845e0

GenotypeDepth
all individuals: 2647
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5198
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8055
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54697
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.809e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: -9.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.852e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.55e-1

FS
type: SiteQuality
SIO_000300: 4.64e0

DP
type: SiteQuality
SIO_000300: 4.200729e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.51e0

QD
type: SiteQuality
SIO_000300: 7.48e0

GenotypeDepth
all individuals: 3542
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5709
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3825
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54697
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.623e0

VQSLOD
type: SiteQuality
SIO_000300: -2.061e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.05e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

DP
type: SiteQuality
SIO_000300: 4.200821e6

GenotypeDepth
all individuals: 5905
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8110
bin: 9.75e1
variant carriers: 92

GenotypeDepth
all individuals: 1942
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54698
bin: 9.75e1
variant carriers: 115

Latino
type: Population
allele count: 7
allele frequency: 6.045949214026602e-4
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 77
allele frequency: 4.663275193798449e-3
allele num: 16512
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 4.64489062031765e-4
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-2

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.084e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.6e0

DP
type: SiteQuality
SIO_000300: 4.207593e6

GenotypeDepth
all individuals: 1927
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2655
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5714
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54694
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.11e-1

FS
type: SiteQuality
SIO_000300: 7.087e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.63e-1

DP
type: SiteQuality
SIO_000300: 4.199939e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.454e1

VQSLOD
type: SiteQuality
SIO_000300: 5.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 3826
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2654
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1927
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54694
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.04e1

VQSLOD
type: SiteQuality
SIO_000300: 4.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.21e-1

DP
type: SiteQuality
SIO_000300: 4.199906e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.981e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

GenotypeDepth
all individuals: 4962
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2680
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2654
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54694
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

QD
type: SiteQuality
SIO_000300: 1.372e1

DP
type: SiteQuality
SIO_000300: 4.199906e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.78e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.11e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

FS
type: SiteQuality
SIO_000300: 2.914e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

GenotypeDepth
all individuals: 3552
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5892
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1927
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54694
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0