15-42129027-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129027
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129027
    reference: chr 15
allele count: 5
allele frequency: 4.812319538017324e-5
allele num: 103900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.45C>T
  hgvsp: ENSP00000424127.1:p.Pro16Ser
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.454C>T
  hgvsp: ENSP00000384174.1:p.Pro152Ser
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+278C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+278C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.836C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+278C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.751C>T
  hgvsp: ENSP00000380467.4:p.Pro251Ser
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1010C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+278C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.320C>T
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34321
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro251Ser
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

15-42129028-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129028
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129028
    reference: chr 15
allele count: 1
allele frequency: 9.598034322570738e-6
allele num: 104188
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.752C>G
  hgvsp: ENSP00000380467.4:p.Pro251Arg
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.837C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+279C>G
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.46C>G
  hgvsp: ENSP00000424127.1:p.Pro16Arg
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.321C>G
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+279C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+279C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1011C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.455C>G
  hgvsp: ENSP00000384174.1:p.Pro152Arg
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+279C>G
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8405
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7658
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro251Arg
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

15-42129028-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129028
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129028
    reference: chr 15
allele count: 1
allele frequency: 9.598034322570738e-6
allele num: 104188
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+279C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.752C>T
  hgvsp: ENSP00000380467.4:p.Pro251Leu
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.455C>T
  hgvsp: ENSP00000384174.1:p.Pro152Leu
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.46C>T
  hgvsp: ENSP00000424127.1:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.321C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+279C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1011C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+279C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+279C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.837C>T
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34302
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7658
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro251Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

15-42129035-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129035
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129035
    reference: chr 15
allele count: 1
allele frequency: 9.453761651761235e-6
allele num: 105778
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.328C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.844C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.759C>T
  hgvsp: ENST00000397299.4:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+286C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.462C>T
  hgvsp: ENST00000408047.1:c.462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.53C>T
  hgvsp: ENST00000487292.1:c.53C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1018C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+286C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+286C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+286C>T
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8986
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33137
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Tyr253Tyr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

15-42129036-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129036
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129036
    reference: chr 15
allele count: 1
allele frequency: 9.422051369024064e-6
allele num: 106134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+287A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.329A>G
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.54A>G
  hgvsp: ENSP00000424127.1:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1019A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.760A>G
  hgvsp: ENSP00000380467.4:p.Ser254Gly
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+287A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+287A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.463A>G
  hgvsp: ENSP00000384174.1:p.Ser155Gly
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.845A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+287A>G
  variant of: http://identifiers.org/hgnc/9036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser254Gly
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

15-42129037-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129037
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129037
    reference: chr 15
allele count: 1
allele frequency: 9.405921968471349e-6
allele num: 106316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.55G>A
  hgvsp: ENSP00000424127.1:p.Ser19Asn
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+288G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.761G>A
  hgvsp: ENSP00000380467.4:p.Ser254Asn
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.464G>A
  hgvsp: ENSP00000384174.1:p.Ser155Asn
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+288G>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.330G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.846G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+288G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1020G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+288G>A
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser254Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

15-42129046-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129046
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129046
    reference: chr 15
allele count: 1
allele frequency: 9.171955827860732e-6
allele num: 109028
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.339A>G
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.473A>G
  hgvsp: ENSP00000384174.1:p.Gln158Arg
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.64A>G
  hgvsp: ENSP00000424127.1:p.Gln22Arg
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.855A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+297A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+297A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+297A>G
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1029A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.770A>G
  hgvsp: ENSP00000380467.4:p.Gln257Arg
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+297A>G
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln257Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-42129047-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129047
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129047
    reference: chr 15
allele count: 1
allele frequency: 9.15616759449165e-6
allele num: 109216
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+298G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1030G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.65G>T
  hgvsp: ENSP00000424127.1:p.Gln22His
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+298G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.771G>T
  hgvsp: ENSP00000380467.4:p.Gln257His
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.340G>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+298G>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.474G>T
  hgvsp: ENSP00000384174.1:p.Gln158His
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.856G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+298G>T
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10389
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln257His
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

15-42129049-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129049
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129049
    reference: chr 15
allele count: 1
allele frequency: 9.128751917037902e-6
allele num: 109544
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.476C>T
  hgvsp: ENSP00000384174.1:p.Ala159Val
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+300C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+300C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.67C>T
  hgvsp: ENSP00000424127.1:p.Ala23Val
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.858C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+300C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.342C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.773C>T
  hgvsp: ENSP00000380467.4:p.Ala258Val
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1032C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+300C>T
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5000
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34469
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala258Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

15-42129054-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129054
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129054
    reference: chr 15
allele count: 43
allele frequency: 3.875340218821536e-4
allele num: 110958
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+305C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.347C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.778C>T
  hgvsp: ENSP00000380467.4:p.Arg260Cys
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.72C>T
  hgvsp: ENSP00000424127.1:p.Arg25Cys
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1037C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+305C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.863C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+305C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.481C>T
  hgvsp: ENSP00000384174.1:p.Arg161Cys
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+305C>T
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11361
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 34747
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5251
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg260Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-42129055-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129055
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129055
    reference: chr 15
allele count: 492
allele frequency: 4.419532176350113e-3
allele num: 111324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.482G>A
  hgvsp: ENSP00000384174.1:p.Arg161His
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.73G>A
  hgvsp: ENSP00000424127.1:p.Arg25His
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+306G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1038G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.779G>A
  hgvsp: ENSP00000380467.4:p.Arg260His
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.348G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.864G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+306G>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+306G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+306G>A
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 1.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 34353
  bin: 2.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11628
  bin: 2.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 3.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 3.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 3.75e1
  variant carriers: 1
hgvs: p.Arg260His
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

15-42129059-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129059
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129059
    reference: chr 15
allele count: 4
allele frequency: 3.556756949013889e-5
allele num: 112462
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.783C>T
  hgvsp: ENST00000397299.4:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.486C>T
  hgvsp: ENST00000408047.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1042C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+310C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+310C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+310C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.77C>T
  hgvsp: ENST00000487292.1:c.77C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.868C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+310C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.352C>T
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12267
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34589
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Cys261Cys
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

15-42129061-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129061
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129061
    reference: chr 15
allele count: 16
allele frequency: 1.420353668063348e-4
allele num: 112648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.79C>T
  hgvsp: ENSP00000424127.1:p.Thr27Met
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+312C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.785C>T
  hgvsp: ENSP00000380467.4:p.Thr262Met
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.354C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+312C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+312C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.488C>T
  hgvsp: ENSP00000384174.1:p.Thr163Met
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+312C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1044C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.870C>T
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34168
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12640
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4246
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr262Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-42129062-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129062
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129062
    reference: chr 15
allele count: 3
allele frequency: 2.658443215652914e-5
allele num: 112848
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+313G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1045G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.871G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.786G>A
  hgvsp: ENST00000397299.4:c.786G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.489G>A
  hgvsp: ENST00000408047.1:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+313G>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+313G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+313G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.355G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.80G>A
  hgvsp: ENST00000487292.1:c.80G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12722
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr262Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

15-42129064-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129064
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129064
    reference: chr 15
allele count: 1
allele frequency: 8.835795575033575e-6
allele num: 113176
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+315T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.788T>C
  hgvsp: ENSP00000380467.4:p.Val263Ala
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.491T>C
  hgvsp: ENSP00000384174.1:p.Val164Ala
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.357T>C
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+315T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+315T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1047T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.873T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.82T>C
  hgvsp: ENSP00000424127.1:p.Val28Ala
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+315T>C
  variant of: http://identifiers.org/hgnc/9036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12890
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val263Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

15-42129067-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129067
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129067
    reference: chr 15
allele count: 3
allele frequency: 2.635231285465821e-5
allele num: 113842
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+318G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.494G>A
  hgvsp: ENSP00000384174.1:p.Arg165Gln
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+318G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.85G>A
  hgvsp: ENSP00000424127.1:p.Arg29Gln
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+318G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.876G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.360G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.791G>A
  hgvsp: ENSP00000380467.4:p.Arg264Gln
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+318G>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1050G>A
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34285
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13212
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37792
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg264Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

15-42129071-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129071
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129071
    reference: chr 15
allele count: 2
allele frequency: 1.744865732581878e-5
allele num: 114622
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1054C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+322C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.498C>T
  hgvsp: ENST00000408047.1:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.364C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+322C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+322C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.795C>T
  hgvsp: ENST00000397299.4:c.795C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.89C>T
  hgvsp: ENST00000487292.1:c.89C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.880C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+322C>T
  variant of: http://identifiers.org/hgnc/9036
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13550
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala265Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

15-42129072-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129072
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129072
    reference: chr 15
allele count: 17
allele frequency: 1.481249128676983e-4
allele num: 114768
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.796G>A
  hgvsp: ENSP00000380467.4:p.Gly266Ser
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1055G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+323G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+323G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.499G>A
  hgvsp: ENSP00000384174.1:p.Gly167Ser
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+323G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.881G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.365G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.90G>A
  hgvsp: ENSP00000424127.1:p.Gly31Ser
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+323G>A
  variant of: http://identifiers.org/hgnc/9036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13624
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6285
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly266Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

15-42129074-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129074
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129074
    reference: chr 15
allele count: 5
allele frequency: 4.337566798528697e-5
allele num: 115272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+325T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+325T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.501T>C
  hgvsp: ENST00000408047.1:c.501T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.883T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1057T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.798T>C
  hgvsp: ENST00000397299.4:c.798T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.367T>C
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+325T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.92T>C
  hgvsp: ENST00000487292.1:c.92T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+325T>C
  variant of: http://identifiers.org/hgnc/9036
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly266Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-42129081-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129081
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129081
    reference: chr 15
allele count: 1
allele frequency: 8.619055006809053e-6
allele num: 116022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1064C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+332C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.99C>G
  hgvsp: ENSP00000424127.1:p.Leu34Val
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.890C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.508C>G
  hgvsp: ENSP00000384174.1:p.Leu170Val
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+332C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.805C>G
  hgvsp: ENSP00000380467.4:p.Leu269Val
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.374C>G
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+332C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+332C>G
  variant of: http://identifiers.org/hgnc/9036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14124
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu269Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-42129083-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129083
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129083
    reference: chr 15
allele count: 256
allele frequency: 2.202567367587845e-3
allele num: 116228
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+334C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.510C>T
  hgvsp: ENST00000408047.1:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+334C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.807C>T
  hgvsp: ENST00000397299.4:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+334C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+334C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.892C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.101C>T
  hgvsp: ENST00000487292.1:c.101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.376C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1066C>T
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14184
  bin: 2.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 3.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35089
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 3.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu269Leu
num of homozygotes: 4
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

15-42129085-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129085
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129085
    reference: chr 15
allele count: 2
allele frequency: 1.718360683907552e-5
allele num: 116390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+336A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.103A>G
  hgvsp: ENSP00000424127.1:p.Tyr35Cys
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.809A>G
  hgvsp: ENSP00000380467.4:p.Tyr270Cys
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.378A>G
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+336A>G
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1068A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+336A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+336A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.512A>G
  hgvsp: ENSP00000384174.1:p.Tyr171Cys
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.894A>G
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr270Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

15-42129086-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129086
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129086
    reference: chr 15
allele count: 69
allele frequency: 5.92620585406074e-4
allele num: 116432
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+337T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+337T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.895T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.104T>C
  hgvsp: ENST00000487292.1:c.104T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1069T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.379T>C
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.810T>C
  hgvsp: ENST00000397299.4:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+337T>C
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+337T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.513T>C
  hgvsp: ENST00000408047.1:c.513T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14339
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35065
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr270Tyr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

15-42129090-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129090
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129090
    reference: chr 15
allele count: 1
allele frequency: 8.567218395531339e-6
allele num: 116724
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.108C>T
  hgvsp: ENSP00000424127.1:p.Pro37Ser
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.517C>T
  hgvsp: ENSP00000384174.1:p.Pro173Ser
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+341C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.383C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.899C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+341C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+341C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+341C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.814C>T
  hgvsp: ENSP00000380467.4:p.Pro272Ser
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1073C>T
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro272Ser
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

15-42129091-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129091
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129091
    reference: chr 15
allele count: 1
allele frequency: 8.559738414394057e-6
allele num: 116826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.109C>T
  hgvsp: ENSP00000424127.1:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.900C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.815C>T
  hgvsp: ENSP00000380467.4:p.Pro272Leu
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.384C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.518C>T
  hgvsp: ENSP00000384174.1:p.Pro173Leu
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+342C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+342C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+342C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+342C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1074C>T
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14600
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro272Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

15-42129096-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129096
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129096
    reference: chr 15
allele count: 4
allele frequency: 3.412212307849794e-5
allele num: 117226
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+347C>G
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.523C>G
  hgvsp: ENSP00000384174.1:p.Leu175Val
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+347C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+347C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.820C>G
  hgvsp: ENSP00000380467.4:p.Leu274Val
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1079C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.389C>G
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+347C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.114C>G
  hgvsp: ENSP00000424127.1:p.Leu39Val
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.905C>G
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2716
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu274Val
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-42129110-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129110
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129110
    reference: chr 15
allele count: 3
allele frequency: 2.546213780108978e-5
allele num: 117822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.919C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1093C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+361C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+361C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.834C>T
  hgvsp: ENST00000397299.4:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+361C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.128C>T
  hgvsp: ENST00000487292.1:c.128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.537C>T
  hgvsp: ENST00000408047.1:c.537C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.403C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+361C>T
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 9.75e1
  variant carriers: 3
hgvs: p.His278His
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

15-42129111-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129111
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129111
    reference: chr 15
allele count: 2
allele frequency: 1.696842176709144e-5
allele num: 117866
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+362G>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.835G>A
  hgvsp: ENSP00000380467.4:p.Val279Ile
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1094G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.129G>A
  hgvsp: ENSP00000424127.1:p.Val44Ile
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.920G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+362G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.538G>A
  hgvsp: ENSP00000384174.1:p.Val180Ile
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.404G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+362G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+362G>A
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2707
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40228
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val279Ile
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

15-42129121-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129121
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129121
    reference: chr 15
allele count: 1
allele frequency: 8.470556346140815e-6
allele num: 118056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.930C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.139C>T
  hgvsp: ENSP00000424127.1:p.Ser47Phe
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+372C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+372C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.845C>T
  hgvsp: ENSP00000380467.4:p.Ser282Phe
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1104C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.548C>T
  hgvsp: ENSP00000384174.1:p.Ser183Phe
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.414C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+372C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+372C>T
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15305
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser282Phe
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ

15-42129134-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129134
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129134
    reference: chr 15
allele count: 9
allele frequency: 7.616146230007616e-5
allele num: 118170
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+385C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1117C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+385C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.427C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.858C>T
  hgvsp: ENST00000397299.4:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.943C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+385C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+385C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.561C>T
  hgvsp: ENST00000408047.1:c.561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.152C>T
  hgvsp: ENST00000487292.1:c.152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile286Ile
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD

15-42129135-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129135
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129135
    reference: chr 15
allele count: 3
allele frequency: 2.538114012081423e-5
allele num: 118198
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+386G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.428G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+386G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.153G>A
  hgvsp: ENSP00000424127.1:p.Ala52Thr
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.562G>A
  hgvsp: ENSP00000384174.1:p.Ala188Thr
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+386G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.859G>A
  hgvsp: ENSP00000380467.4:p.Ala287Thr
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+386G>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1118G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.944G>A
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7099
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala287Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

15-42129139-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129139
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129139
    reference: chr 15
allele count: 3
allele frequency: 2.537899296155929e-5
allele num: 118208
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+390G>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1121+1G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.565+1G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+390G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.862+1G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.947+1G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.156+1G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+390G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+390G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.431+1G>A
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 2.25e1
  variant carriers: 0
hgvs: c.862+1G>A
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

15-42129147-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129147
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129147
    reference: chr 15
allele count: 4
allele frequency: 3.382949932341002e-5
allele num: 118240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+398T>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.565+9T>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+398T>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.862+9T>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.947+9T>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+398T>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.156+9T>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+398T>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1121+9T>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.431+9T>A
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15396
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-42129150-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129150
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129150
    reference: chr 15
allele count: 17
allele frequency: 1.438751502225833e-4
allele num: 118158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+401C>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+401C>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1121+12C>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.565+12C>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.947+12C>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+401C>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+401C>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.862+12C>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.431+12C>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.156+12C>A
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15309
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

15-42129155-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129155
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129155
    reference: chr 15
allele count: 2
allele frequency: 1.692534231504832e-5
allele num: 118166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.565+17G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1121+17G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+406G>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.862+17G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+406G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.947+17G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.431+17G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+406G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.156+17G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+406G>A
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36314
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

15-42129156-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129156
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129156
    reference: chr 15
allele count: 23
allele frequency: 1.946677951756242e-4
allele num: 118150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+407C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+407C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.565+18C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+407C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1121+18C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.947+18C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+407C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.862+18C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.156+18C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.431+18C>T
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32493
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15468
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

15-42129157-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129157
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129157
    reference: chr 15
allele count: 10
allele frequency: 8.464103736055389e-5
allele num: 118146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+408C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.156+19C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+408C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+408C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.862+19C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1121+19C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.565+19C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.431+19C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+408C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.947+19C>T
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36106
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

15-42129158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129158
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129158
    reference: chr 15
allele count: 37900
allele frequency: 3.204911378703829e-1
allele num: 118256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.947+20G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+409G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.156+20G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.565+20G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+409G>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.431+20G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+409G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+409G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1121+20G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.862+20G>A
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 6.25e1
  variant carriers: 1279
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.25e1
  variant carriers: 494
genotype depth: GenotypeDepth
  all individuals: 6796
  bin: 3.25e1
  variant carriers: 4208
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 1.75e1
  variant carriers: 1226
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.5e0
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 10753
  bin: 2.75e1
  variant carriers: 3489
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 4.75e1
  variant carriers: 3414
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.75e1
  variant carriers: 791
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 5.25e1
  variant carriers: 2618
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 1.25e1
  variant carriers: 550
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 3.75e1
  variant carriers: 4422
genotype depth: GenotypeDepth
  all individuals: 16994
  bin: 2.25e1
  variant carriers: 2335
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 5.75e1
  variant carriers: 1889
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.75e1
  variant carriers: 314
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 4.25e1
  variant carriers: 3994
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 5.25e1
  variant carriers: 168
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 2.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 29280
  bin: 9.75e1
  variant carriers: 28736
num of homozygotes: 6455
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-42129159-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129159
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129159
    reference: chr 15
allele count: 1
allele frequency: 8.443378702421561e-6
allele num: 118436
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+410C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.947+21C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+410C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+410C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1121+21C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.431+21C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.156+21C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.862+21C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.565+21C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+410C>T
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22770
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

15-42129164-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129164
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129164
    reference: chr 15
allele count: 1
allele frequency: 8.448800270361608e-6
allele num: 118360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.431+26G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.565+26G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+415G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+415G>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+415G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.862+26G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1121+26G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.156+26G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.947+26G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+415G>A
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10176
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

15-42129167-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129167
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129167
    reference: chr 15
allele count: 1
allele frequency: 8.451227963423086e-6
allele num: 118326
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+418G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.156+29G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1121+29G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+418G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+418G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.862+29G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.565+29G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.431+29G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+418G>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.947+29G>A
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17594
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3814
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

15-42129168-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129168
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129168
    reference: chr 15
allele count: 23050
allele frequency: 1.948897456709957e-1
allele num: 118272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1121+30A>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+419A>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+419A>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+419A>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+419A>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.156+30A>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.947+30A>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.431+30A>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.565+30A>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.862+30A>T
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8752
  bin: 3.25e1
  variant carriers: 3340
genotype depth: GenotypeDepth
  all individuals: 5267
  bin: 4.25e1
  variant carriers: 2386
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 6.75e1
  variant carriers: 313
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 1.75e1
  variant carriers: 1276
genotype depth: GenotypeDepth
  all individuals: 12177
  bin: 2.25e1
  variant carriers: 2131
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.75e1
  variant carriers: 808
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 1.25e1
  variant carriers: 525
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 4.75e1
  variant carriers: 1817
genotype depth: GenotypeDepth
  all individuals: 10542
  bin: 2.75e1
  variant carriers: 2939
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.25e1
  variant carriers: 551
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 5.25e1
  variant carriers: 1281
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 3.75e1
  variant carriers: 2937
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.5e0
  variant carriers: 175
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 3.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 7.75e1
  variant carriers: 133
num of homozygotes: 2360
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ

15-42129170-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129170
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129171
    reference: chr 15
allele count: 1
allele frequency: 8.449656943928076e-6
allele num: 118348
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+424dupC
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.156+35dupC
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.862+35dupC
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+424dupC
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.947+35dupC
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+424dupC
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.431+35dupC
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.565+35dupC
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1121+35dupC
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+424dupC
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8881
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14580
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

15-42129170-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129170
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129169
    reference: chr 15
allele count: 18
allele frequency: 1.520938249907054e-4
allele num: 118348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.947+35delC
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.862+35delC
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+424delC
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+424delC
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.431+35delC
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+424delC
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.156+35delC
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1121+35delC
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+424delC
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.565+35delC
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11118
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8881
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14580
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3683
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: GC
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

15-42129175-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129175
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129175
    reference: chr 15
allele count: 18
allele frequency: 1.521889848994707e-4
allele num: 118274
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.431+37G>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1121+37G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.947+37G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.862+37G>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+426G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+426G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.565+37G>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+426G>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+426G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.156+37G>T
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8757
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11124
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

15-42129176-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129176
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129176
    reference: chr 15
allele count: 61430
allele frequency: 5.217960043490079e-1
allele num: 117728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.156+38T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+427T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.947+38T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+427T>C
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1121+38T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.431+38T>C
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+427T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.565+38T>C
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+427T>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.862+38T>C
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10718
  bin: 2.75e1
  variant carriers: 7263
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 3.75e1
  variant carriers: 6563
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 277
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 1.75e1
  variant carriers: 3214
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 1.25e1
  variant carriers: 1281
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 4.75e1
  variant carriers: 3478
genotype depth: GenotypeDepth
  all individuals: 12460
  bin: 2.25e1
  variant carriers: 5511
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 4.25e1
  variant carriers: 5026
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 3.25e1
  variant carriers: 7587
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 5.25e1
  variant carriers: 2237
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.5e0
  variant carriers: 416
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 500
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 6.25e1
  variant carriers: 825
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 1286
genotype quality: GenotypeQuality
  all individuals: 37504
  bin: 9.75e1
  variant carriers: 37292
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.5e0
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 5.75e1
  variant carriers: 415
num of homozygotes: 16183
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

15-42129217-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129217
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129217
    reference: chr 15
allele count: 1
allele frequency: 8.736065974770241e-6
allele num: 114468
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.157-49C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+468C>G
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.432-49C>G
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.566-49C>G
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1122-49C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+468C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.863-49C>G
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.948-49C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+468C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+468C>G
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3984
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

15-42129217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129217
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129217
    reference: chr 15
allele count: 1
allele frequency: 8.736065974770241e-6
allele num: 114468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.157-49C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.948-49C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+468C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+468C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1122-49C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.566-49C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.863-49C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+468C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.432-49C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+468C>T
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11255
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4263
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3984
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

15-42129219-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129219
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129219
    reference: chr 15
allele count: 1
allele frequency: 8.75196919306844e-6
allele num: 114260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.566-47A>G
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.863-47A>G
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1122-47A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+470A>G
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+470A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+470A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+470A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.157-47A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.432-47A>G
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.948-47A>G
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11589
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16084
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19870
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4261
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

15-42129220-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129220
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129220
    reference: chr 15
allele count: 2
allele frequency: 1.750301927082422e-5
allele num: 114266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+471G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.157-46G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+471G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+471G>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1122-46G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.948-46G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.863-46G>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+471G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.432-46G>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.566-46G>T
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11507
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16325
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3790
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/15-42129224-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129224
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129224
    reference: chr 15
allele count: 1
allele frequency: 8.742328606647666e-6
allele num: 114386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+475A>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1122-42A>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+475A>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.566-42A>C
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.157-42A>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+475A>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.432-42A>C
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+475A>C
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.863-42A>C
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.948-42A>C
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10875
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14710
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-42129231-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129231
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129231
    reference: chr 15
allele count: 7
allele frequency: 6.132711885195633e-5
allele num: 114142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.948-35G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+482G>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.566-35G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.863-35G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.157-35G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1122-35G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+482G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+482G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.432-35G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+482G>A
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9623
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18911
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3193
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-42129242-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129242
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129242
    reference: chr 15
allele count: 1
allele frequency: 8.736829229935872e-6
allele num: 114458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+493C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+493C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.863-24C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1122-24C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.157-24C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+493C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.948-24C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.432-24C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+493C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.566-24C>T
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

15-42129244-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129244
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129244
    reference: chr 15
allele count: 3
allele frequency: 2.618120887368439e-5
allele num: 114586
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+495C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.948-22C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+495C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+495C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+495C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.432-22C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1122-22C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.566-22C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.157-22C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.863-22C>T
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23341
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31847
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD

15-42129250-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129250
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129250
    reference: chr 15
allele count: 1
allele frequency: 8.697618592029503e-6
allele num: 114974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.157-16C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.566-16C>G
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+501C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+501C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.863-16C>G
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+501C>G
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.948-16C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1122-16C>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.432-16C>G
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+501C>G
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4896
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15707
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

15-42129252-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129252
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129252
    reference: chr 15
allele count: 384
allele frequency: 3.338259584456229e-3
allele num: 115030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.566-14C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+503C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+503C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.432-14C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.157-14C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+503C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.948-14C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.863-14C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1122-14C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+503C>T
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25870
  bin: 2.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 3.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15878
  bin: 2.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 1.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 8
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

15-42129253-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129253
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129253
    reference: chr 15
allele count: 4
allele frequency: 3.474031613687685e-5
allele num: 115140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.432-13G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.157-13G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.863-13G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+504G>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+504G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+504G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.948-13G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1122-13G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.566-13G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+504G>A
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16087
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26459
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-42129258-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129258
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129257
    reference: chr 15
allele count: 1
allele frequency: 8.656659568205821e-6
allele num: 115518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+512delC
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.948-5delC
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.863-5delC
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+512delC
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+512delC
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.432-5delC
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.566-5delC
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.157-5delC
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1122-5delC
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+512delC
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5008
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
hgvs: c.863-5delC
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: TC
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-42129261-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129261
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129261
    reference: chr 15
allele count: 25
allele frequency: 2.162068667300873e-4
allele num: 115630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1122-5C>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+512C>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+512C>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.566-5C>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+512C>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+512C>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.157-5C>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.948-5C>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.432-5C>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.863-5C>A
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28387
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3681
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16472
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3543
  bin: 2.25e1
  variant carriers: 0
hgvs: c.863-5C>A
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-42129275-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129275
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129275
    reference: chr 15
allele count: 1
allele frequency: 8.629170046424936e-6
allele num: 115886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.957G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+526G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.872G>T
  hgvsp: ENSP00000380467.4:p.Trp291Leu
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.166G>T
  hgvsp: ENSP00000424127.1:p.Trp56Leu
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.575G>T
  hgvsp: ENSP00000384174.1:p.Trp192Leu
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+526G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1131G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+526G>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+526G>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.441G>T
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5068
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Trp291Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

15-42129276-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129276
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129276
    reference: chr 15
allele count: 1
allele frequency: 8.621878879845495e-6
allele num: 115984
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.958G>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+527G>C
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+527G>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.167G>C
  hgvsp: ENSP00000424127.1:p.Trp56Cys
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.873G>C
  hgvsp: ENSP00000380467.4:p.Trp291Cys
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.576G>C
  hgvsp: ENSP00000384174.1:p.Trp192Cys
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.442G>C
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1132G>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+527G>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+527G>C
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Trp291Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-42129283-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129283
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129283
    reference: chr 15
allele count: 1
allele frequency: 8.6333419666753e-6
allele num: 115830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+534A>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.174A>T
  hgvsp: ENSP00000424127.1:p.Met59Leu
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.965A>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.583A>T
  hgvsp: ENSP00000384174.1:p.Met195Leu
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+534A>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.880A>T
  hgvsp: ENSP00000380467.4:p.Met294Leu
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.449A>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+534A>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1139A>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+534A>T
  variant of: http://identifiers.org/hgnc/9036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met294Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff

15-42129292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129292
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129292
    reference: chr 15
allele count: 2
allele frequency: 1.73391361642363e-5
allele num: 115346
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.889G>A
  hgvsp: ENSP00000380467.4:p.Asp297Asn
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+543G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.974G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.183G>A
  hgvsp: ENSP00000424127.1:p.Asp62Asn
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+543G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+543G>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1148G>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.458G>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.592G>A
  hgvsp: ENSP00000384174.1:p.Asp198Asn
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+543G>A
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17370
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp297Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

15-42129298-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129298
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129298
    reference: chr 15
allele count: 22
allele frequency: 1.917612398235797e-4
allele num: 114726
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.980A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+549A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+549A>G
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.895A>G
  hgvsp: ENSP00000380467.4:p.Lys299Glu
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.598A>G
  hgvsp: ENSP00000384174.1:p.Lys200Glu
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.189A>G
  hgvsp: ENSP00000424127.1:p.Lys64Glu
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.464A>G
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1154A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+549A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+549A>G
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17313
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27734
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4678
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys299Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

15-42129302-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129302
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129302
    reference: chr 15
allele count: 1
allele frequency: 8.7470697316399e-6
allele num: 114324
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.899A>G
  hgvsp: ENSP00000380467.4:p.Tyr300Cys
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.602A>G
  hgvsp: ENSP00000384174.1:p.Tyr201Cys
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+553A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.193A>G
  hgvsp: ENSP00000424127.1:p.Tyr65Cys
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1158A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.984A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+553A>G
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+553A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+553A>G
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.468A>G
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17221
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr300Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

15-42129303-TAGTTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129303
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129298
    reference: chr 15
allele count: 1
allele frequency: 8.756260726419389e-6
allele num: 114204
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+555_702+559delAGTTA
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.470_474delAGTTA
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.986_990delAGTTA
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+555_702+559delAGTTA
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+555_702+559delAGTTA
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+555_504+559delAGTTA
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.901_905delAGTTA
  hgvsp: ENSP00000380467.4:p.Ser301LeufsTer14
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.604_608delAGTTA
  hgvsp: ENSP00000384174.1:p.Ser202LeufsTer14
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.195_199delAGTTA
  hgvsp: ENSP00000424127.1:p.Ser66LeufsTer14
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1160_1164delAGTTA
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5154
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser301LeufsTer14
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: TAGTTA
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-42129307-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129307
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129307
    reference: chr 15
allele count: 3
allele frequency: 2.643078658020863e-5
allele num: 113504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+558T>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.989T>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.198T>A
  hgvsp: ENSP00000424127.1:p.Tyr67Asn
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+558T>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+558T>A
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.473T>A
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.607T>A
  hgvsp: ENSP00000384174.1:p.Tyr203Asn
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+558T>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1163T>A
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.904T>A
  hgvsp: ENSP00000380467.4:p.Tyr302Asn
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17082
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr302Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

15-42129315-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129315
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129315
    reference: chr 15
allele count: 1
allele frequency: 8.923790826343031e-6
allele num: 112060
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.912G>C
  hgvsp: ENSP00000380467.4:p.Gln304His
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.615G>C
  hgvsp: ENSP00000384174.1:p.Gln205His
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+566G>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.206G>C
  hgvsp: ENSP00000424127.1:p.Gln69His
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+566G>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.481G>C
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.997G>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1171G>C
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+566G>C
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+566G>C
  variant of: http://identifiers.org/hgnc/34449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24146
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln304His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

15-42129321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42129321
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42129321
    reference: chr 15
allele count: 4
allele frequency: 3.61722522652873e-5
allele num: 110582
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000490848
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000490848.1:n.1177C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000371886
  ensembl transcript: ENST00000382448
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000382448.4:c.702+572C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000342785
  ensembl transcript: ENST00000342159
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000342159.4:c.702+572C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243789
  ensembl transcript: ENST00000478178
  gene symbol: JMJD7
  hgvsc: ENST00000478178.1:n.487C>T
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000243708
  ensembl protein: ENSP00000441905
  ensembl transcript: ENST00000542534
  gene symbol: PLA2G4B
  hgvsc: ENST00000542534.2:c.702+572C>T
  variant of: http://identifiers.org/hgnc/9036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000476036
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000476036.1:n.504+572C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168970
  ensembl protein: ENSP00000424127
  ensembl transcript: ENST00000487292
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000487292.1:c.212C>T
  hgvsp: ENST00000487292.1:c.212C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168970
  ensembl transcript: ENST00000491746
  gene symbol: JMJD7-PLA2G4B
  hgvsc: ENST00000491746.1:n.1003C>T
  variant of: http://identifiers.org/hgnc/34449
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000380467
  ensembl transcript: ENST00000397299
  gene symbol: JMJD7
  hgvsc: ENST00000397299.4:c.918C>T
  hgvsp: ENST00000397299.4:c.918C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243789
  ensembl protein: ENSP00000384174
  ensembl transcript: ENST00000408047
  gene symbol: JMJD7
  hgvsc: ENST00000408047.1:c.621C>T
  hgvsp: ENST00000408047.1:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8077
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22276
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu306Leu
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1415
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8883
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4196
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 748
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34800
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.452561800856236e-4
allele num: 14482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57642
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

FS
type: SiteQuality
SIO_000300: 5.590000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

DP
type: SiteQuality
SIO_000300: 1.231357e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

QD
type: SiteQuality
SIO_000300: 1.269e1

GenotypeQuality
all individuals: 562
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8714
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34606
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.729804532087874e-5
allele num: 57810
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.491e0

VQSLOD
type: SiteQuality
SIO_000300: -1.869e0

FS
type: SiteQuality
SIO_000300: 5.53e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

QD
type: SiteQuality
SIO_000300: 7.88e0

MQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.23444e6

GenotypeQuality
all individuals: 562
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34606
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8714
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 475
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.30582397492818e-4
allele num: 7658
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.23444e6

VQSLOD
type: SiteQuality
SIO_000300: -1.869e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.491e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

FS
type: SiteQuality
SIO_000300: 5.53e0

MQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

QD
type: SiteQuality
SIO_000300: 7.88e0

GenotypeQuality
all individuals: 1456
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7834
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4340
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.703635558281372e-5
allele num: 58698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.251596e6

QD
type: SiteQuality
SIO_000300: 1.006e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.514e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.372e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.17e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58920
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.964129135113592e-5
allele num: 10036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

VQSLOD
type: SiteQuality
SIO_000300: -2.008e0

DP
type: SiteQuality
SIO_000300: 1.254271e6

MQRankSum
type: SiteQuality
SIO_000300: -3.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.448e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 4.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

GenotypeQuality
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 821
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.241927471435668e-4
allele num: 8052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7802
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.141e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.264e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.603e1

FS
type: SiteQuality
SIO_000300: 6.107e0

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.358e0

DP
type: SiteQuality
SIO_000300: 1.257783e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4977
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variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.655355073663301e-5
allele num: 60410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15110
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.293402e6

QD
type: SiteQuality
SIO_000300: 1.259e1

VQSLOD
type: SiteQuality
SIO_000300: -2.704e0

FS
type: SiteQuality
SIO_000300: 1.8263e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.856e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: -1.652e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

GenotypeQuality
all individuals: 102
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 61
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 643
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variant carriers: 0

GenotypeQuality
all individuals: 5016
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8042
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10436
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.606765327695561e-5
allele num: 15136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.75e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.576e0

VQSLOD
type: SiteQuality
SIO_000300: -8.657e-1

DP
type: SiteQuality
SIO_000300: 1.295954e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 658
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1146
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 331
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1736
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variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.588483331137172e-5
allele num: 15178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.098e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

VQSLOD
type: SiteQuality
SIO_000300: -2.5e0

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.484e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.75e-1

QD
type: SiteQuality
SIO_000300: 2.83e0

DP
type: SiteQuality
SIO_000300: 1.302168e6

GenotypeQuality
all individuals: 1048
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 987
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variant carriers: 1

GenotypeQuality
all individuals: 295
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variant carriers: 2

GenotypeQuality
all individuals: 492
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GenotypeQuality
all individuals: 36614
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GenotypeQuality
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GenotypeQuality
all individuals: 388
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 688
bin: 9.75e1
variant carriers: 40

GenotypeQuality
all individuals: 5377
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.219512195121951e-3
allele num: 820
num of homozygotes: 0

South Asian
type: Population
allele count: 23
allele frequency: 1.497590832139602e-3
allele num: 15358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61400
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.222195062331948e-4
allele num: 8182
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 2.130681818181818e-3
allele num: 8448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10640
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.58e0

MQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

QD
type: SiteQuality
SIO_000300: 1.367e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

DP
type: SiteQuality
SIO_000300: 1.323122e6

FS
type: SiteQuality
SIO_000300: 5.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.31e-1

GenotypeQuality
all individuals: 1197
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
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GenotypeQuality
all individuals: 5039
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variant carriers: 0

GenotypeQuality
all individuals: 1006
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GenotypeQuality
all individuals: 149
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 1862
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GenotypeQuality
all individuals: 1112
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GenotypeQuality
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bin: 9.75e1
variant carriers: 487

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 834
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GenotypeQuality
all individuals: 358
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GenotypeQuality
all individuals: 1047
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1836
bin: 7.75e1
variant carriers: 1

Latino
type: Population
allele count: 34
allele frequency: 3.186504217432053e-3
allele num: 10670
num of homozygotes: 0

African
type: Population
allele count: 25
allele frequency: 2.94256120527307e-3
allele num: 8496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.4330900243309e-3
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 396
allele frequency: 6.428988895382817e-3
allele num: 61596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 30
allele frequency: 4.900359359686377e-3
allele num: 6122
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.245067497403946e-4
allele num: 15408
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.334106e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

FS
type: SiteQuality
SIO_000300: 5.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

GenotypeQuality
all individuals: 4494
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1995
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
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GenotypeQuality
all individuals: 759
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variant carriers: 4

GenotypeQuality
all individuals: 972
bin: 2.75e1
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GenotypeQuality
all individuals: 2000
bin: 7.75e1
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GenotypeQuality
all individuals: 5764
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GenotypeQuality
all individuals: 1144
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variant carriers: 0

GenotypeQuality
all individuals: 398
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GenotypeQuality
all individuals: 1060
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GenotypeQuality
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GenotypeQuality
all individuals: 95
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GenotypeQuality
all individuals: 36
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 791
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variant carriers: 0

GenotypeQuality
all individuals: 64
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GenotypeQuality
all individuals: 916
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.434178355424013e-5
allele num: 62168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15536
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.350294e6

FS
type: SiteQuality
SIO_000300: 5.595e0

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.619e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

MQ
type: SiteQuality
SIO_000300: 5.938e1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.369e1

GenotypeQuality
all individuals: 401
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5700
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1611
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35279
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 1382
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 12
allele frequency: 1.441614608361365e-3
allele num: 8324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.243852837862822e-5
allele num: 10818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.213883978788366e-5
allele num: 62230
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.425083526085839e-5
allele num: 15564
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.215e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

FS
type: SiteQuality
SIO_000300: 2.619e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.846e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

DP
type: SiteQuality
SIO_000300: 1.356137e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-2

GenotypeQuality
all individuals: 986
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2045
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36209
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 356
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4170
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5790
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.282215668675471e-4
allele num: 15598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.604312391708914e-5
allele num: 62332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.478e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.242e1

DP
type: SiteQuality
SIO_000300: 1.359782e6

GenotypeQuality
all individuals: 36984
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5890
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2092
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4049
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15650
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.179364787956673e-5
allele num: 10894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e0

DP
type: SiteQuality
SIO_000300: 1.364039e6

MQRankSum
type: SiteQuality
SIO_000300: -6.38e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 1.138e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 2.114e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.33e-2

GenotypeQuality
all individuals: 2207
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
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variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6077
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
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variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2181
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3703
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.269518852354958e-4
allele num: 15754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.591799051287766e-5
allele num: 62822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10970
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.376704e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

QD
type: SiteQuality
SIO_000300: 1.088e1

GenotypeQuality
all individuals: 482
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6256
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
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variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2346
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variant carriers: 0

GenotypeQuality
all individuals: 541
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variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2278
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variant carriers: 0

GenotypeQuality
all individuals: 38508
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.165157941381275e-5
allele num: 63188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.33e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.17e-1

FS
type: SiteQuality
SIO_000300: 9.112e0

QD
type: SiteQuality
SIO_000300: 1.291e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.389171e6

GenotypeQuality
all individuals: 838
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38880
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3123
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
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variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.903388973191705e-5
allele num: 63264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.557626905151782e-4
allele num: 15878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.394898e6

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.302e1

GenotypeQuality
all individuals: 295
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38908
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2883
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
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variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6428
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 559
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15948
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.897617362585516e-4
allele num: 8478
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.388e1

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

DP
type: SiteQuality
SIO_000300: 1.400061e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 1.031e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2476
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2439
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 448
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6576
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
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variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39250
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564896247378799e-5
allele num: 63902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

VQSLOD
type: SiteQuality
SIO_000300: -8.466e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.475e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

DP
type: SiteQuality
SIO_000300: 1.412542e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-2

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 587
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 256
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39556
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1491
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2347
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 9.75e1
variant carriers: 251

GenotypeQuality
all individuals: 2530
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.901548869503294e-5
allele num: 11234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.687792987061691e-5
allele num: 63996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9044
num of homozygotes: 0

East Asian
type: Population
allele count: 242
allele frequency: 2.837711069418386e-2
allele num: 8528
num of homozygotes: 4

South Asian
type: Population
allele count: 6
allele frequency: 3.725782414307004e-4
allele num: 16104
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.662004662004662e-3
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.96e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.36e0

DP
type: SiteQuality
SIO_000300: 1.4206e6

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.12e0

FS
type: SiteQuality
SIO_000300: 5.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeQuality
all individuals: 2277
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39761
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6650
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2580
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2476
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560744162816831e-5
allele num: 64072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.103509159126021e-4
allele num: 9062
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.077e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.31e-1

DP
type: SiteQuality
SIO_000300: 1.421315e6

MQ
type: SiteQuality
SIO_000300: 5.844e1

MQRankSum
type: SiteQuality
SIO_000300: -7.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.14e0

QD
type: SiteQuality
SIO_000300: 1.465e1

GenotypeQuality
all individuals: 39058
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 643
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2484
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2581
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 9.75e1
variant carriers: 68

GenotypeQuality
all individuals: 207
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64098
num of homozygotes: 0

African
type: Population
allele count: 64
allele frequency: 7.050011015642212e-3
allele num: 9078
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.165501165501166e-3
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.554291807357384e-4
allele num: 11254
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.422487e6

VQSLOD
type: SiteQuality
SIO_000300: 5.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.353e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

GenotypeQuality
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39950
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2626
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6722
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 186
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.538935056940597e-4
allele num: 6498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.479e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.33e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.75e-1

FS
type: SiteQuality
SIO_000300: 1.074e0

DP
type: SiteQuality
SIO_000300: 1.429127e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 39918
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2642
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2528
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1580
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555645437291932e-5
allele num: 64282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9146
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.431391e6

MQRankSum
type: SiteQuality
SIO_000300: -4.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.331e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.002e0

QD
type: SiteQuality
SIO_000300: 1.326e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

GenotypeQuality
all individuals: 416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2593
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 439
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6897
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40333
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.460932693490833e-4
allele num: 16254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.14e-1

DP
type: SiteQuality
SIO_000300: 1.437854e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.49e-1

FS
type: SiteQuality
SIO_000300: 1.134e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.53e-1

QD
type: SiteQuality
SIO_000300: 1.131e1

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40485
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1491
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7030
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.630201259414742e-5
allele num: 64792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16324
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-2

DP
type: SiteQuality
SIO_000300: 1.44979e6

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

QD
type: SiteQuality
SIO_000300: 1.111e1

FS
type: SiteQuality
SIO_000300: 2.879e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e-1

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7041
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 365
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64818
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.124448799608035e-5
allele num: 16328
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.073883161512027e-4
allele num: 9312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.595e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.12e-1

DP
type: SiteQuality
SIO_000300: 1.449951e6

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

QD
type: SiteQuality
SIO_000300: 1.177e1

GenotypeQuality
all individuals: 199
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2717
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64918
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.758101243650377e-5
allele num: 11418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.781e0

VQSLOD
type: SiteQuality
SIO_000300: -2.046e0

QD
type: SiteQuality
SIO_000300: 2.461e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

FS
type: SiteQuality
SIO_000300: 5.792e0

DP
type: SiteQuality
SIO_000300: 1.452675e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 489
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64984
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.871261150953297e-4
allele num: 11434
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

DP
type: SiteQuality
SIO_000300: 1.453523e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.71e-2

MQ
type: SiteQuality
SIO_000300: 5.931e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.812e1

GenotypeQuality
all individuals: 225
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.622836160167862e-4
allele num: 11438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.550000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.864e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.472e0

MQRankSum
type: SiteQuality
SIO_000300: 3.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.369e0

DP
type: SiteQuality
SIO_000300: 1.453433e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.43e-1

GenotypeQuality
all individuals: 2755
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 610
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variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.615242607919756e-5
allele num: 65002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.75e-1

FS
type: SiteQuality
SIO_000300: 4.222e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.381e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

DP
type: SiteQuality
SIO_000300: 1.451777e6

QD
type: SiteQuality
SIO_000300: 1.017e1

GenotypeQuality
all individuals: 753
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.448879637565814e-4
allele num: 16334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.449642e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-2

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

FS
type: SiteQuality
SIO_000300: 3.593e0

VQSLOD
type: SiteQuality
SIO_000300: 5.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 17

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64984
num of homozygotes: 0

East Asian
type: Population
allele count: 17
allele frequency: 1.979506287843503e-3
allele num: 8588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: -8.451e-1

FS
type: SiteQuality
SIO_000300: 1.0093e1

QD
type: SiteQuality
SIO_000300: 9.609999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 1.449879e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

BaseQRankSum
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SIO_000300: -1.757e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.078817733990148e-5
allele num: 64960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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allele num: 16314
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.451183e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.75e-1

FS
type: SiteQuality
SIO_000300: 4.743e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

QD
type: SiteQuality
SIO_000300: 1.458e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.73e-1

BaseQRankSum
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SIO_000300: -1.797e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 23

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 923
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GenotypeQuality
all individuals: 1790
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.739730816290858e-5
allele num: 11442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.337441563960901e-3
allele num: 9412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.828e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.48e-1

DP
type: SiteQuality
SIO_000300: 1.452544e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 1.111e1

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3033
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 910
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7114
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 2782
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.990562740300594e-4
allele num: 11444
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.136363636363636e-3
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64952
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.453201e6

FS
type: SiteQuality
SIO_000300: 2.613e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.96e-1

QD
type: SiteQuality
SIO_000300: 1.045e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

GenotypeQuality
all individuals: 17258
bin: 6.25e1
variant carriers: 241

GenotypeQuality
all individuals: 379
bin: 5.75e1
variant carriers: 170

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 26

GenotypeQuality
all individuals: 181
bin: 7.5e0
variant carriers: 32

GenotypeQuality
all individuals: 615
bin: 4.75e1
variant carriers: 129

GenotypeQuality
all individuals: 3495
bin: 6.75e1
variant carriers: 281

GenotypeQuality
all individuals: 1473
bin: 7.25e1
variant carriers: 225

GenotypeQuality
all individuals: 389
bin: 2.75e1
variant carriers: 53

GenotypeQuality
all individuals: 1122
bin: 8.25e1
variant carriers: 404

GenotypeQuality
all individuals: 149
bin: 2.5e0
variant carriers: 28

GenotypeQuality
all individuals: 119
bin: 1.75e1
variant carriers: 50

GenotypeQuality
all individuals: 598
bin: 3.75e1
variant carriers: 87

GenotypeQuality
all individuals: 1560
bin: 7.75e1
variant carriers: 299

GenotypeQuality
all individuals: 603
bin: 9.25e1
variant carriers: 365

GenotypeQuality
all individuals: 506
bin: 8.75e1
variant carriers: 231

GenotypeQuality
all individuals: 629
bin: 3.25e1
variant carriers: 83

GenotypeQuality
all individuals: 432
bin: 4.25e1
variant carriers: 102

European (Finnish)
type: Population
allele count: 2669
allele frequency: 4.06859756097561e-1
allele num: 6560
num of homozygotes: 556

Latino
type: Population
allele count: 4459
allele frequency: 3.894323144104804e-1
allele num: 11450
num of homozygotes: 860

African
type: Population
allele count: 988
allele frequency: 1.047053836371344e-1
allele num: 9436
num of homozygotes: 61

European (Non-Finnish)
type: Population
allele count: 22925
allele frequency: 3.524212144504227e-1
allele num: 65050
num of homozygotes: 3973

South Asian
type: Population
allele count: 5102
allele frequency: 3.128142244022072e-1
allele num: 16310
num of homozygotes: 827

East Asian
type: Population
allele count: 1467
allele frequency: 1.71218487394958e-1
allele num: 8568
num of homozygotes: 130

Other
type: Population
allele count: 290
allele frequency: 3.287981859410431e-1
allele num: 882
num of homozygotes: 48

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.29e-2

DP
type: SiteQuality
SIO_000300: 1.974673e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.191e0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

QD
type: SiteQuality
SIO_000300: 1.664e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

GenotypeQuality
all individuals: 1232
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
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variant carriers: 0

GenotypeQuality
all individuals: 1438
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2698
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10172
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6258
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3836
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65134
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.713837574067619e-5
allele num: 11476
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.26e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.63e-1

FS
type: SiteQuality
SIO_000300: 6.89e0

QD
type: SiteQuality
SIO_000300: 1.281e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.844e0

DP
type: SiteQuality
SIO_000300: 1.801307e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

GenotypeQuality
all individuals: 805
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21886
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2696
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3820
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1375
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6186
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65072
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.718395815170009e-5
allele num: 11470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.976e0

DP
type: SiteQuality
SIO_000300: 1.79736e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.848e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.094e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.12e-1

GenotypeQuality
all individuals: 914
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20731
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6035
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1731
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2679
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10174
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1439
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.140243153628883e-5
allele num: 16286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65046
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.197e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.78e-1

FS
type: SiteQuality
SIO_000300: 7.14e0

VQSLOD
type: SiteQuality
SIO_000300: 4.88e-1

QD
type: SiteQuality
SIO_000300: 1.398e1

DP
type: SiteQuality
SIO_000300: 1.794407e6

GenotypeQuality
all individuals: 806
bin: 2.25e1
variant carriers: 34

GenotypeQuality
all individuals: 1004
bin: 5.25e1
variant carriers: 83

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 15

GenotypeQuality
all individuals: 191
bin: 7.5e0
variant carriers: 31

GenotypeQuality
all individuals: 1763
bin: 7.25e1
variant carriers: 66

GenotypeQuality
all individuals: 485
bin: 5.75e1
variant carriers: 54

GenotypeQuality
all individuals: 474
bin: 2.75e1
variant carriers: 33

GenotypeQuality
all individuals: 1931
bin: 9.25e1
variant carriers: 178

GenotypeQuality
all individuals: 1179
bin: 4.75e1
variant carriers: 50

GenotypeQuality
all individuals: 1112
bin: 8.75e1
variant carriers: 102

GenotypeQuality
all individuals: 940
bin: 3.25e1
variant carriers: 35

GenotypeQuality
all individuals: 3831
bin: 6.75e1
variant carriers: 128

GenotypeQuality
all individuals: 143
bin: 1.75e1
variant carriers: 41

GenotypeQuality
all individuals: 2296
bin: 8.25e1
variant carriers: 174

GenotypeQuality
all individuals: 692
bin: 4.25e1
variant carriers: 34

GenotypeQuality
all individuals: 27197
bin: 9.75e1
variant carriers: 19594

GenotypeQuality
all individuals: 12168
bin: 6.25e1
variant carriers: 114

European (Non-Finnish)
type: Population
allele count: 11892
allele frequency: 1.829425881484216e-1
allele num: 65004
num of homozygotes: 1055

Latino
type: Population
allele count: 1702
allele frequency: 1.485684357541899e-1
allele num: 11456
num of homozygotes: 123

African
type: Population
allele count: 3086
allele frequency: 3.253215264600464e-1
allele num: 9486
num of homozygotes: 487

East Asian
type: Population
allele count: 1090
allele frequency: 1.271878646441074e-1
allele num: 8570
num of homozygotes: 65

South Asian
type: Population
allele count: 4082
allele frequency: 2.505216644163496e-1
allele num: 16294
num of homozygotes: 522

Other
type: Population
allele count: 169
allele frequency: 1.903153153153153e-1
allele num: 888
num of homozygotes: 18

European (Finnish)
type: Population
allele count: 1029
allele frequency: 1.565257073319136e-1
allele num: 6574
num of homozygotes: 90

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.97e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.068e0

QD
type: SiteQuality
SIO_000300: 1.911e1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.965098e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
all individuals: 655
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13516
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
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GenotypeQuality
all individuals: 5596
bin: 6.75e1
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GenotypeQuality
all individuals: 3049
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1736
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2596
bin: 7.25e1
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GenotypeQuality
all individuals: 4218
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.710801393728223e-5
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-2

QD
type: SiteQuality
SIO_000300: 1.866e1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 5.434e0

DP
type: SiteQuality
SIO_000300: 1.902069e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

GenotypeQuality
all individuals: 4218
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1736
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3049
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13516
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 1012
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2596
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5596
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 18
allele frequency: 2.093023255813954e-3
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65036
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 5.434e0

DP
type: SiteQuality
SIO_000300: 1.902069e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 1.866e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-2

GenotypeQuality
all individuals: 1161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13516
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 1798
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64982
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

East Asian
type: Population
allele count: 18
allele frequency: 2.094484524086572e-3
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.613e0

QD
type: SiteQuality
SIO_000300: 1.892e1

VQSLOD
type: SiteQuality
SIO_000300: -4.952e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 4.421e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

DP
type: SiteQuality
SIO_000300: 1.900378e6

GenotypeQuality
all individuals: 1414
bin: 8.25e1
variant carriers: 1098

GenotypeQuality
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bin: 6.25e1
variant carriers: 777

GenotypeQuality
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bin: 4.75e1
variant carriers: 416

GenotypeQuality
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variant carriers: 137

GenotypeQuality
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variant carriers: 95

GenotypeQuality
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bin: 6.75e1
variant carriers: 826

GenotypeQuality
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variant carriers: 1078

GenotypeQuality
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variant carriers: 235

GenotypeQuality
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bin: 7.75e1
variant carriers: 968

GenotypeQuality
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variant carriers: 297

GenotypeQuality
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variant carriers: 592

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 211

GenotypeQuality
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bin: 1.25e1
variant carriers: 77

GenotypeQuality
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variant carriers: 147

GenotypeQuality
all individuals: 694
bin: 8.75e1
variant carriers: 580

GenotypeQuality
all individuals: 1117
bin: 7.25e1
variant carriers: 535

European (Non-Finnish)
type: Population
allele count: 34613
allele frequency: 5.351091460021026e-1
allele num: 64684
num of homozygotes: 9183

European (Finnish)
type: Population
allele count: 3708
allele frequency: 5.669724770642202e-1
allele num: 6540
num of homozygotes: 1043

South Asian
type: Population
allele count: 9333
allele frequency: 5.725064409274936e-1
allele num: 16302
num of homozygotes: 2704

African
type: Population
allele count: 4650
allele frequency: 4.913355874894336e-1
allele num: 9464
num of homozygotes: 1129

East Asian
type: Population
allele count: 2550
allele frequency: 2.993660483681616e-1
allele num: 8518
num of homozygotes: 384

Latino
type: Population
allele count: 6117
allele frequency: 5.394179894179895e-1
allele num: 11340
num of homozygotes: 1617

Other
type: Population
allele count: 459
allele frequency: 5.215909090909091e-1
allele num: 880
num of homozygotes: 123

QD
type: SiteQuality
SIO_000300: 2.467e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

DP
type: SiteQuality
SIO_000300: 1.925486e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e-1

GenotypeQuality
all individuals: 4263
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2607
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.586948931983369e-5
allele num: 63014
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.146e1

MQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.394813e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.84e-1

GenotypeQuality
all individuals: 2262
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4228
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 300
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GenotypeQuality
all individuals: 1419
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1473
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GenotypeQuality
all individuals: 2607
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.213592233009709e-4
allele num: 8240
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.394813e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.146e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.13e0

GenotypeQuality
all individuals: 252
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4374
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.295643414756988e-5
allele num: 15884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9054
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.464e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.042e1

FS
type: SiteQuality
SIO_000300: 3.431e0

MQRankSum
type: SiteQuality
SIO_000300: -7.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.632e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

DP
type: SiteQuality
SIO_000300: 1.386274e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.590280207372539e-5
allele num: 62882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.279040562602035e-5
allele num: 15926
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.385774e6

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.04e-1

QD
type: SiteQuality
SIO_000300: 7.84e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.279040562602035e-5
allele num: 15926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.386195e6

QD
type: SiteQuality
SIO_000300: 1.166e1

InbreedingCoeff
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SIO_000300: 3.0e-3

MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.917e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.228e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.12e-1

GenotypeQuality
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GenotypeQuality
all individuals: 2607
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2270
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.772161448509996e-4
allele num: 15906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.213886865744113e-4
allele num: 8238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.53e-1

QD
type: SiteQuality
SIO_000300: 1.355e1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

FS
type: SiteQuality
SIO_000300: 1.76e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 1.391495e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

GenotypeQuality
all individuals: 4624
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1987
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15910
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.587755231653488e-5
allele num: 62982
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e0

VQSLOD
type: SiteQuality
SIO_000300: -1.002e-1

FS
type: SiteQuality
SIO_000300: 4.834e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.67e-1

DP
type: SiteQuality
SIO_000300: 1.42019e6

QD
type: SiteQuality
SIO_000300: 1.072e1

GenotypeQuality
all individuals: 1364
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2603
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 1
allele frequency: 6.279040562602035e-5
allele num: 15926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.17208564631245e-5
allele num: 63050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.428467e6

MQ
type: SiteQuality
SIO_000300: 5.91e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.725e0

MQRankSum
type: SiteQuality
SIO_000300: 9.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.4e0

FS
type: SiteQuality
SIO_000300: 8.904999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.024e0

QD
type: SiteQuality
SIO_000300: 1.204e1

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34353
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variant carriers: 0

GenotypeQuality
all individuals: 4772
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
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variant carriers: 0

GenotypeQuality
all individuals: 2261
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 885
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variant carriers: 0

GenotypeQuality
all individuals: 710
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variant carriers: 0

GenotypeQuality
all individuals: 1225
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1387
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2605
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 360
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.550387596899225e-4
allele num: 6450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15912
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

FS
type: SiteQuality
SIO_000300: 2.53e0

DP
type: SiteQuality
SIO_000300: 1.449727e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.73e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.43e-1

GenotypeQuality
all individuals: 969
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35790
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 73
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 3.25e1
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GenotypeQuality
all individuals: 2932
bin: 9.75e1
variant carriers: 369

GenotypeQuality
all individuals: 1193
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 701
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 253
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 354
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4748
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4051
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 5.75e1
variant carriers: 1

Other
type: Population
allele count: 2
allele frequency: 2.325581395348837e-3
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 8.770006577504934e-4
allele num: 9122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 256
allele frequency: 4.040531582436314e-3
allele num: 63358
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 24
allele frequency: 3.717472118959108e-3
allele num: 6456
num of homozygotes: 0

South Asian
type: Population
allele count: 85
allele frequency: 5.337854810349159e-3
allele num: 15924
num of homozygotes: 6

Latino
type: Population
allele count: 9
allele frequency: 8.19672131147541e-4
allele num: 10980
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.18e0

DP
type: SiteQuality
SIO_000300: 1.462233e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

QD
type: SiteQuality
SIO_000300: 1.407e1

GenotypeQuality
all individuals: 712
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3971
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4848
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 36721
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 185
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variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 356
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GenotypeQuality
all individuals: 880
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1343
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.75e1
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GenotypeQuality
all individuals: 968
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9122
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.120758847136082e-5
allele num: 10964
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.88371216878061e-4
allele num: 15926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63460
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.639999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

FS
type: SiteQuality
SIO_000300: 4.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

DP
type: SiteQuality
SIO_000300: 1.464368e6

QD
type: SiteQuality
SIO_000300: 1.374e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.51e-1

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2593
bin: 9.75e1
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GenotypeQuality
all individuals: 257
bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 483
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GenotypeQuality
all individuals: 762
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GenotypeQuality
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GenotypeQuality
all individuals: 3698
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GenotypeQuality
all individuals: 37
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GenotypeQuality
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GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 38585
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GenotypeQuality
all individuals: 1166
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GenotypeQuality
all individuals: 1467
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GenotypeQuality
all individuals: 730
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
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GenotypeQuality
all individuals: 639
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.570154503203115e-5
allele num: 63688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9158
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

QD
type: SiteQuality
SIO_000300: 1.417e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

FS
type: SiteQuality
SIO_000300: 1.141e0

DP
type: SiteQuality
SIO_000300: 1.476057e6

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

MQ
type: SiteQuality
SIO_000300: 6.02e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

GenotypeQuality
all individuals: 719
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
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GenotypeQuality
all individuals: 153
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GenotypeQuality
all individuals: 1014
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1289
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variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
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GenotypeQuality
all individuals: 440
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
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GenotypeQuality
all individuals: 582
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GenotypeQuality
all individuals: 256
bin: 8.75e1
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GenotypeQuality
all individuals: 1342
bin: 7.25e1
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GenotypeQuality
all individuals: 1249
bin: 7.75e1
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GenotypeQuality
all individuals: 2615
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 355
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GenotypeQuality
all individuals: 749
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GenotypeQuality
all individuals: 5025
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GenotypeQuality
all individuals: 39268
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 22
allele frequency: 2.399127589967285e-3
allele num: 9170
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.165501165501166e-3
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.081002542680712e-5
allele num: 11012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568135486906069e-5
allele num: 63770
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.693e0

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

DP
type: SiteQuality
SIO_000300: 1.484086e6

FS
type: SiteQuality
SIO_000300: 2.517e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

GenotypeQuality
all individuals: 719
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1235
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variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2593
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GenotypeQuality
all individuals: 259
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GenotypeQuality
all individuals: 703
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GenotypeQuality
all individuals: 1344
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GenotypeQuality
all individuals: 143
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variant carriers: 0

GenotypeQuality
all individuals: 3327
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563672754565924e-5
allele num: 63952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11034
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.266e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.259e0

MQRankSum
type: SiteQuality
SIO_000300: 7.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.74e-1

DP
type: SiteQuality
SIO_000300: 1.500117e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11040
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.562304711911011e-5
allele num: 64008
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

MQRankSum
type: SiteQuality
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DP
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BaseQRankSum
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MQ
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InbreedingCoeff
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SIO_000300: -5.0e-4

FS
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SIO_000300: 0.0e0

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.298815822625347e-5
allele num: 15876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9228
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11010
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

FS
type: SiteQuality
SIO_000300: 5.093e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.500957e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568824323052305e-5
allele num: 63742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.325110689437066e-5
allele num: 15810
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.17e-1

DP
type: SiteQuality
SIO_000300: 1.494863e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.089e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10894
num of homozygotes: 0

East Asian
type: Population
allele count: 21
allele frequency: 2.522825564632388e-3
allele num: 8324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.374298827129016e-5
allele num: 15688
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 1.112e0

QD
type: SiteQuality
SIO_000300: 1.047e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.397134083930399e-5
allele num: 15632
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63210
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ReadPosRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
type: Population
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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DP
type: SiteQuality
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FS
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ClippingRankSum
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MQRankSum
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VQSLOD
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QD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

Latino
type: Population
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Other
type: Population
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East Asian
type: Population
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African
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.778896393526188e-5
allele num: 62776
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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QD
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DP
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1543
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36001
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2593
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 648
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61988
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.124606387764283e-4
allele num: 8892
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

FS
type: SiteQuality
SIO_000300: 6.63e-1

QD
type: SiteQuality
SIO_000300: 1.67e1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e-1

MQ
type: SiteQuality
SIO_000300: 5.884e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.87e-1

DP
type: SiteQuality
SIO_000300: 1.429065e6