7-127670211-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670211
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670211
    reference: chr 7
allele count: 1
allele frequency: 8.257365570088519e-6
allele num: 121104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22014G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.483C>T
  hgvsp: ENST00000249363.3:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39102G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44343G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39102G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2789
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3563
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15301
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser161Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-127670213-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670213
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670213
    reference: chr 7
allele count: 1
allele frequency: 8.256002113536541e-6
allele num: 121124
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39104T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.481A>G
  hgvsp: ENSP00000249363.3:p.Ser161Gly
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39104T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.235A>G
  hgvsp: ENST00000494115.1:c.235A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44341T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22016T>C
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6889
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25080
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser161Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-127670245-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670245
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670245
    reference: chr 7
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39136C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39136C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.449G>A
  hgvsp: ENSP00000249363.3:p.Arg150Gln
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.203G>A
  hgvsp: ENSP00000418254.1:p.Arg68Gln
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44309C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22048C>T
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25154
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15302
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg150Gln
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

7-127670249-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670249
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670249
    reference: chr 7
allele count: 2
allele frequency: 1.648125257519571e-5
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.445C>T
  hgvsp: ENST00000249363.3:c.445C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.199C>T
  hgvsp: ENST00000494115.1:c.199C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39140G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22052G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44305G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39140G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3151
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6919
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15306
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu149Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

7-127670249-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670249
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670249
    reference: chr 7
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.199C>A
  hgvsp: ENSP00000418254.1:p.Leu67Met
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39140G>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44305G>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22052G>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.445C>A
  hgvsp: ENSP00000249363.3:p.Leu149Met
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39140G>T
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15306
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu149Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

7-127670251-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670251
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670251
    reference: chr 7
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22054T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.197A>G
  hgvsp: ENSP00000418254.1:p.Lys66Arg
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39142T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39142T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44303T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.443A>G
  hgvsp: ENSP00000249363.3:p.Lys148Arg
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25163
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15307
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6920
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys148Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

7-127670258-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670258
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670258
    reference: chr 7
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.190C>T
  hgvsp: ENST00000494115.1:c.190C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39149G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.436C>T
  hgvsp: ENST00000249363.3:c.436C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44296G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39149G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22061G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6930
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu146Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

7-127670264-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670264
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670264
    reference: chr 7
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44290C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39155C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.430G>C
  hgvsp: ENSP00000249363.3:p.Glu144Gln
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22067C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39155C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.184G>C
  hgvsp: ENSP00000418254.1:p.Glu62Gln
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu144Gln
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

7-127670268-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670268
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670268
    reference: chr 7
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39159G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44286G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.426C>T
  hgvsp: ENST00000249363.3:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39159G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.180C>T
  hgvsp: ENST00000494115.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22071G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25148
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala142Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

7-127670269-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670269
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670269
    reference: chr 7
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.179C>T
  hgvsp: ENSP00000418254.1:p.Ala60Val
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39160G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.425C>T
  hgvsp: ENSP00000249363.3:p.Ala142Val
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39160G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44285G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22072G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala142Val
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

7-127670280-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670280
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670280
    reference: chr 7
allele count: 2
allele frequency: 1.64774506088418e-5
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.168C>T
  hgvsp: ENST00000494115.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.414C>T
  hgvsp: ENST00000249363.3:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22083G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39171G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39171G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44274G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6934
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25161
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile138Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-127670295-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670295
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670295
    reference: chr 7
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.399C>T
  hgvsp: ENST00000249363.3:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44259G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22098G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.153C>T
  hgvsp: ENST00000494115.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39186G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39186G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2806
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15313
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3595
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6930
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn133Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

7-127670296-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670296
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670296
    reference: chr 7
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.152A>G
  hgvsp: ENSP00000418254.1:p.Asn51Ser
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22099T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.398A>G
  hgvsp: ENSP00000249363.3:p.Asn133Ser
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44258T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39187T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39187T>C
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16998
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3595
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15313
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn133Ser
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-127670304-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670304
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670304
    reference: chr 7
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.144G>T
  hgvsp: ENST00000494115.1:c.144G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.390G>T
  hgvsp: ENST00000249363.3:c.390G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22107C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44250C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39195C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39195C>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3593
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15315
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu130Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

7-127670310-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670310
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670310
    reference: chr 7
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.384G>A
  hgvsp: ENST00000249363.3:c.384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22113C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39201C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44244C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.138G>A
  hgvsp: ENST00000494115.1:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39201C>T
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3596
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6924
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu128Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

7-127670317-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670317
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670317
    reference: chr 7
allele count: 2
allele frequency: 1.648777431534517e-5
allele num: 121302
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39208T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39208T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.377A>G
  hgvsp: ENSP00000249363.3:p.Asn126Ser
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44237T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.131A>G
  hgvsp: ENSP00000418254.1:p.Asn44Ser
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22120T>C
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13233
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3530
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15320
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3089
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24457
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn126Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-127670325-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670325
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670325
    reference: chr 7
allele count: 2
allele frequency: 1.820134325913252e-5
allele num: 109882
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.369C>T
  hgvsp: ENST00000249363.3:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39216G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.123C>T
  hgvsp: ENST00000494115.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22128G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44229G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39216G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6189
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala123Ala
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

7-127670326-GCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670326
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670324
    reference: chr 7
allele count: 1
allele frequency: 8.402372830087217e-6
allele num: 119014
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39218_426+39219delCC
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22130_326+22131delCC
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.120_121delGG
  hgvsp: ENSP00000418254.1:p.Ala41GlnfsTer17
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39218_1779+39219delCC
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.366_367delGG
  hgvsp: ENSP00000249363.3:p.Ala123GlnfsTer17
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44227_340-44226delCC
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15303
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3072
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala123GlnfsTer17
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: GCC
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

7-127670327-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670327
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670327
    reference: chr 7
allele count: 2500
allele frequency: 4.11522633744856e-2
allele num: 60750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.121G>C
  hgvsp: ENSP00000418254.1:p.Ala41Pro
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44227C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39218C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.367G>C
  hgvsp: ENSP00000249363.3:p.Ala123Pro
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22130C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39218C>G
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 7.75e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 5.25e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 7.25e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 6.25e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.25e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 4.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 5.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 4.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 9.75e1
  variant carriers: 1001
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 8.75e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 6.75e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.25e1
  variant carriers: 140
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 7040
  bin: 9.75e1
  variant carriers: 2339
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 27567
  bin: 2.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 9.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 3.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 2.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 8.75e1
  variant carriers: 15
hgvs: p.Ala123Pro
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

7-127670328-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670328
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670328
    reference: chr 7
allele count: 2261
allele frequency: 2.010635648988013e-2
allele num: 112452
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39219C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.120G>C
  hgvsp: ENST00000494115.1:c.120G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.366G>C
  hgvsp: ENST00000249363.3:c.366G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44226C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39219C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22131C>G
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 5.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.25e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7754
  bin: 3.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 9.75e1
  variant carriers: 694
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 4.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.25e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 6982
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 10172
  bin: 3.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.75e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.25e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.75e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 6.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 10733
  bin: 2.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 4.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 6.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.75e1
  variant carriers: 126
genotype quality: GenotypeQuality
  all individuals: 3992
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3494
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2823
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5985
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.25e1
  variant carriers: 5
hgvs: p.Leu122Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-127670329-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670329
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670329
    reference: chr 7
allele count: 2261
allele frequency: 1.963423529820418e-2
allele num: 115156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22132A>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39220A>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.119T>C
  hgvsp: ENSP00000418254.1:p.Leu40Pro
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.365T>C
  hgvsp: ENSP00000249363.3:p.Leu122Pro
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39220A>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44225A>G
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 3.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 4.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.25e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 540
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7087
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 4.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.75e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10991
  bin: 2.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 8.25e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 5.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 5.25e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.25e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 6.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 10350
  bin: 3.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 6.25e1
  variant carriers: 160
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4129
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2063
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3617
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.25e1
  variant carriers: 2
hgvs: p.Leu122Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

7-127670334-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670334
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670334
    reference: chr 7
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39225G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44220G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22137G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.114C>T
  hgvsp: ENST00000494115.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39225G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.360C>T
  hgvsp: ENST00000249363.3:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16397
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4415
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3357
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn120Asn
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

7-127670348-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670348
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670348
    reference: chr 7
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39239C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.100G>C
  hgvsp: ENSP00000418254.1:p.Val34Leu
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.346G>C
  hgvsp: ENSP00000249363.3:p.Val116Leu
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22151C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44206C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39239C>G
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3871
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val116Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-127670351-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670351
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670352
    reference: chr 7
allele count: 1
allele frequency: 8.25082508250825e-6
allele num: 121200
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.96dupT
  hgvsp: ENSP00000418254.1:p.Glu33Ter
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.342dupT
  hgvsp: ENSP00000249363.3:p.Glu115Ter
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22156dupA
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39244dupA
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39244dupA
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44201dupA
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3859
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu115Ter
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

7-127670400-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670400
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670400
    reference: chr 7
allele count: 8
allele frequency: 6.601640507666154e-5
allele num: 121182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39291G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44154G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.48C>T
  hgvsp: ENST00000494115.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.294C>T
  hgvsp: ENST00000249363.3:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39291G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22203G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12258
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3337
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4409
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu98Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-127670407-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670407
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670407
    reference: chr 7
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.287G>C
  hgvsp: ENSP00000249363.3:p.Arg96Pro
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22210C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39298C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39298C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44147C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.41G>C
  hgvsp: ENSP00000418254.1:p.Arg14Pro
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16191
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6882
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg96Pro
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

7-127670407-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670407
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670407
    reference: chr 7
allele count: 8
allele frequency: 6.60414740457007e-5
allele num: 121136
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39298C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39298C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22210C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.287G>A
  hgvsp: ENSP00000249363.3:p.Arg96His
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44147C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.41G>A
  hgvsp: ENSP00000418254.1:p.Arg14His
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16191
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 20118
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3849
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6882
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg96His
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ

7-127670408-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670408
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670408
    reference: chr 7
allele count: 1
allele frequency: 8.254639107178234e-6
allele num: 121144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44146G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22211G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39299G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.286C>T
  hgvsp: ENSP00000249363.3:p.Arg96Cys
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39299G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.40C>T
  hgvsp: ENSP00000418254.1:p.Arg14Cys
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3337
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4407
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3852
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg96Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

7-127670417-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670417
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670417
    reference: chr 7
allele count: 2
allele frequency: 1.651227687785869e-5
allele num: 121122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.31G>A
  hgvsp: ENSP00000418254.1:p.Asp11Asn
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22220C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39308C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44137C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.277G>A
  hgvsp: ENSP00000418093.1:p.Asp93Asn
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.277G>A
  hgvsp: ENSP00000249363.3:p.Asp93Asn
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39308C>T
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3334
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16185
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp93Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-127670422-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670422
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670422
    reference: chr 7
allele count: 15
allele frequency: 1.238666204231284e-4
allele num: 121098
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.272A>C
  hgvsp: ENSP00000249363.3:p.Gln91Pro
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.26A>C
  hgvsp: ENSP00000418254.1:p.Gln9Pro
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39313T>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22225T>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.272A>C
  hgvsp: ENSP00000418093.1:p.Gln91Pro
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39313T>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44132T>G
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3329
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16186
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln91Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

7-127670423-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670423
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670423
    reference: chr 7
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.271C>G
  hgvsp: ENSP00000249363.3:p.Gln91Glu
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.25C>G
  hgvsp: ENSP00000418254.1:p.Gln9Glu
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39314G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44131G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.271C>G
  hgvsp: ENSP00000418093.1:p.Gln91Glu
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22226G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39314G>C
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln91Glu
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

7-127670436-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670436
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670436
    reference: chr 7
allele count: 22
allele frequency: 1.817010522142751e-4
allele num: 121078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.12C>T
  hgvsp: ENST00000494115.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39327G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39327G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.258C>T
  hgvsp: ENST00000249363.3:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.258C>T
  hgvsp: ENST00000476782.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22239G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44118G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4405
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn86Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

7-127670437-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670437
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670437
    reference: chr 7
allele count: 1
allele frequency: 8.259820927082301e-6
allele num: 121068
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22240T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.11A>G
  hgvsp: ENSP00000418254.1:p.Asn4Ser
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.257A>G
  hgvsp: ENSP00000418093.1:p.Asn86Ser
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.257A>G
  hgvsp: ENSP00000249363.3:p.Asn86Ser
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39328T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44117T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39328T>C
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3852
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn86Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

7-127670448-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670448
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670448
    reference: chr 7
allele count: 2
allele frequency: 1.652400938563733e-5
allele num: 121036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22251G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.246C>T
  hgvsp: ENST00000249363.3:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39339G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39339G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.246C>T
  hgvsp: ENST00000476782.1:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44106G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16172
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3851
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu82Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

7-127670457-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670457
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670457
    reference: chr 7
allele count: 1
allele frequency: 8.263643275047103e-6
allele num: 121012
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.237C>T
  hgvsp: ENST00000249363.3:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.237C>T
  hgvsp: ENST00000476782.1:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39348G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22260G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39348G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44097G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4407
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3852
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16171
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Tyr79Tyr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

7-127670458-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670458
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670458
    reference: chr 7
allele count: 1
allele frequency: 8.263916435277007e-6
allele num: 121008
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39349T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-11A>G
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44096T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39349T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.236A>G
  hgvsp: ENSP00000418093.1:p.Tyr79Cys
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22261T>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.236A>G
  hgvsp: ENSP00000249363.3:p.Tyr79Cys
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3851
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr79Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-127670461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670461
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670461
    reference: chr 7
allele count: 3
allele frequency: 2.47950277704311e-5
allele num: 120992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44093C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39352C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.233G>A
  hgvsp: ENSP00000249363.3:p.Arg78Gln
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39352C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.233G>A
  hgvsp: ENSP00000418093.1:p.Arg78Gln
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-14G>A
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22264C>T
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16172
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6852
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg78Gln
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

7-127670462-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670462
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670462
    reference: chr 7
allele count: 1
allele frequency: 8.265555775970376e-6
allele num: 120984
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.232C>A
  hgvsp: ENST00000249363.3:c.232C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-15C>A
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39353G>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22265G>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.232C>A
  hgvsp: ENST00000476782.1:c.232C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44092G>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39353G>T
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6852
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3326
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg78Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

7-127670463-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670463
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670463
    reference: chr 7
allele count: 7
allele frequency: 5.785602115877345e-5
allele num: 120990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39354G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.231C>T
  hgvsp: ENST00000476782.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22266G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44091G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39354G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.231C>T
  hgvsp: ENST00000249363.3:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4407
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16173
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 20111
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3328
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr77Thr
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

7-127670466-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670466
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670466
    reference: chr 7
allele count: 1
allele frequency: 8.265282507356101e-6
allele num: 120988
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39357G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22269G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.228C>T
  hgvsp: ENST00000249363.3:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44088G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.228C>T
  hgvsp: ENST00000476782.1:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39357G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-19C>T
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20142
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3096
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn76Asn
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-127670469-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670469
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670469
    reference: chr 7
allele count: 1
allele frequency: 8.266785708380868e-6
allele num: 120966
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39360C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.225G>C
  hgvsp: ENST00000249363.3:c.225G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-22G>C
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44085C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.225G>C
  hgvsp: ENST00000476782.1:c.225G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39360C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22272C>G
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4399
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16169
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3328
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser75Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

7-127670472-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670472
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670472
    reference: chr 7
allele count: 1
allele frequency: 8.266785708380868e-6
allele num: 120966
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.222C>T
  hgvsp: ENST00000249363.3:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.222C>T
  hgvsp: ENST00000476782.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22275G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39363G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44082G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39363G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20129
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6848
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro74Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

7-127670472-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670472
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670472
    reference: chr 7
allele count: 6
allele frequency: 4.96007142502852e-5
allele num: 120966
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-25C>G
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39363G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.222C>G
  hgvsp: ENST00000476782.1:c.222C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22275G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44082G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.222C>G
  hgvsp: ENST00000249363.3:c.222C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39363G>C
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3098
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4395
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20129
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16169
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro74Pro
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/7-127670484-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670484
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670484
    reference: chr 7
allele count: 5
allele frequency: 4.135922972570559e-5
allele num: 120892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-37G>T
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.210G>T
  hgvsp: ENST00000476782.1:c.210G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39375C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39375C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44070C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.210G>T
  hgvsp: ENST00000249363.3:c.210G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22287C>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4351
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6832
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16169
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3848
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro70Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD

7-127670493-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670493
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670493
    reference: chr 7
allele count: 6
allele frequency: 4.963518141658808e-5
allele num: 120882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.201C>T
  hgvsp: ENST00000476782.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39384G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39384G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-46C>T
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.201C>T
  hgvsp: ENST00000249363.3:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44061G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22296G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4384
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3849
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser67Ser
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-127670508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670508
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670508
    reference: chr 7
allele count: 1
allele frequency: 8.278282753025713e-6
allele num: 120798
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22311C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44046C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39399C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.186G>A
  hgvsp: ENST00000476782.1:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.186G>A
  hgvsp: ENST00000249363.3:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-61G>A
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39399C>T
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4344
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4370
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3842
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3306
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr62Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

7-127670523-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670523
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670523
    reference: chr 7
allele count: 1
allele frequency: 8.279790686891435e-6
allele num: 120776
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.171C>T
  hgvsp: ENST00000249363.3:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44031G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22326G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-76C>T
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.171C>T
  hgvsp: ENST00000476782.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39414G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39414G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19929
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser57Ser
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

7-127670524-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670524
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670524
    reference: chr 7
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39415C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44030C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.170G>C
  hgvsp: ENSP00000418093.1:p.Ser57Thr
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39415C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22327C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-77G>C
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.170G>C
  hgvsp: ENSP00000249363.3:p.Ser57Thr
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6745
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3847
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser57Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

7-127670541-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670541
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670541
    reference: chr 7
allele count: 1
allele frequency: 8.283768783445716e-6
allele num: 120718
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.153G>C
  hgvsp: ENST00000476782.1:c.153G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39432C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39432C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-94G>C
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.153G>C
  hgvsp: ENST00000249363.3:c.153G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22344C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44013C>G
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8066
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19883
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3839
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3262
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6730
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser51Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

7-127670548-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670548
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670548
    reference: chr 7
allele count: 1
allele frequency: 8.282122210995345e-6
allele num: 120742
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.146T>C
  hgvsp: ENSP00000249363.3:p.Val49Ala
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39439A>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.146T>C
  hgvsp: ENSP00000418093.1:p.Val49Ala
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.146T>C
  hgvsp: ENSP00000417795.1:p.Val49Ala
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39439A>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22351A>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-101T>C
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44006A>G
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val49Ala
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

7-127670549-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670549
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670549
    reference: chr 7
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-102G>A
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22352C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39440C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.145G>A
  hgvsp: ENSP00000249363.3:p.Val49Ile
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44005C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.145G>A
  hgvsp: ENSP00000417795.1:p.Val49Ile
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39440C>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.145G>A
  hgvsp: ENSP00000418093.1:p.Val49Ile
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10953
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19965
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val49Ile
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

7-127670550-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670550
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670550
    reference: chr 7
allele count: 2
allele frequency: 1.656314699792961e-5
allele num: 120750
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39441G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.144C>G
  hgvsp: ENST00000249363.3:c.144C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22353G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44004G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.144C>G
  hgvsp: ENST00000476782.1:c.144C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-103C>G
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.144C>G
  hgvsp: ENST00000478726.1:c.144C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39441G>C
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3838
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16156
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20046
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6734
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser48Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-127670554-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670554
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670554
    reference: chr 7
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.140C>T
  hgvsp: ENSP00000249363.3:p.Pro47Leu
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.140C>T
  hgvsp: ENSP00000417795.1:p.Pro47Leu
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.140C>T
  hgvsp: ENSP00000418093.1:p.Pro47Leu
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22357G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-44000G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-107C>T
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39445G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39445G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8051
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro47Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD

7-127670556-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670556
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670556
    reference: chr 7
allele count: 2
allele frequency: 1.656067832538421e-5
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39447G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-109C>T
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.138C>T
  hgvsp: ENST00000249363.3:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39447G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.138C>T
  hgvsp: ENST00000476782.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43998G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.138C>T
  hgvsp: ENST00000478726.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22359G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4364
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20070
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3092
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys46Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

7-127670561-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670561
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670561
    reference: chr 7
allele count: 1
allele frequency: 8.282945415389712e-6
allele num: 120730
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22364T>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43993T>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.133A>C
  hgvsp: ENSP00000418093.1:p.Asn45His
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.133A>C
  hgvsp: ENSP00000417795.1:p.Asn45His
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-114A>C
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39452T>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.133A>C
  hgvsp: ENSP00000249363.3:p.Asn45His
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39452T>G
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20054
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn45His
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

7-127670567-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670567
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670567
    reference: chr 7
allele count: 1
allele frequency: 8.285553309249991e-6
allele num: 120692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22370G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.127C>T
  hgvsp: ENSP00000417795.1:p.Pro43Ser
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.127C>T
  hgvsp: ENSP00000249363.3:p.Pro43Ser
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39458G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43987G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.127C>T
  hgvsp: ENSP00000418093.1:p.Pro43Ser
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-120C>T
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39458G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6728
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro43Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

7-127670578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670578
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670578
    reference: chr 7
allele count: 1
allele frequency: 8.302062232258493e-6
allele num: 120452
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43976G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.116C>T
  hgvsp: ENSP00000249363.3:p.Ala39Val
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-131C>T
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39469G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39469G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22381G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.116C>T
  hgvsp: ENSP00000418093.1:p.Ala39Val
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.116C>T
  hgvsp: ENSP00000417795.1:p.Ala39Val
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala39Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

7-127670578-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670578
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670578
    reference: chr 7
allele count: 1
allele frequency: 8.302062232258493e-6
allele num: 120452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22381G>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39469G>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.116C>A
  hgvsp: ENSP00000418093.1:p.Ala39Asp
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.116C>A
  hgvsp: ENSP00000249363.3:p.Ala39Asp
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.116C>A
  hgvsp: ENSP00000417795.1:p.Ala39Asp
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-131C>A
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43976G>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39469G>T
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19676
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3830
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16151
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala39Asp
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/7-127670579-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670579
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670579
    reference: chr 7
allele count: 1
allele frequency: 8.301510874979247e-6
allele num: 120460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43975C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.115G>T
  hgvsp: ENSP00000418093.1:p.Ala39Ser
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39470C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39470C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22382C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.115G>T
  hgvsp: ENSP00000417795.1:p.Ala39Ser
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.115G>T
  hgvsp: ENSP00000249363.3:p.Ala39Ser
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-132G>T
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala39Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

7-127670581-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670581
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670581
    reference: chr 7
allele count: 5
allele frequency: 4.151237899141524e-5
allele num: 120446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39472G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43973G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.113C>T
  hgvsp: ENSP00000418093.1:p.Ala38Val
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.113C>T
  hgvsp: ENSP00000249363.3:p.Ala38Val
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-134C>T
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.113C>T
  hgvsp: ENSP00000417795.1:p.Ala38Val
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22384G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39472G>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8017
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4342
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16154
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala38Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

7-127670584-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670584
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670584
    reference: chr 7
allele count: 2
allele frequency: 1.661764461505226e-5
allele num: 120354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-137C>T
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43970G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39475G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.110C>T
  hgvsp: ENSP00000418093.1:p.Ala37Val
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22387G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39475G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.110C>T
  hgvsp: ENSP00000249363.3:p.Ala37Val
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.110C>T
  hgvsp: ENSP00000417795.1:p.Ala37Val
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6610
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala37Val
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP

7-127670587-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670587
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670587
    reference: chr 7
allele count: 1
allele frequency: 8.315870006320061e-6
allele num: 120252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.107C>G
  hgvsp: ENSP00000417795.1:p.Ala36Gly
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.107C>G
  hgvsp: ENSP00000418093.1:p.Ala36Gly
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39478G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22390G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39478G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43967G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.107C>G
  hgvsp: ENSP00000249363.3:p.Ala36Gly
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-140C>G
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7751
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4338
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala36Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

7-127670589-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670589
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670589
    reference: chr 7
allele count: 1
allele frequency: 8.316976612661764e-6
allele num: 120236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22392G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39480G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43965G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-142C>T
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.105C>T
  hgvsp: ENST00000478726.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39480G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.105C>T
  hgvsp: ENST00000249363.3:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.105C>T
  hgvsp: ENST00000476782.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10748
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4331
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16148
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile35Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

7-127670589-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670589
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670589
    reference: chr 7
allele count: 1
allele frequency: 8.316976612661764e-6
allele num: 120236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.105C>A
  hgvsp: ENST00000478726.1:c.105C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-142C>A
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43965G>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.105C>A
  hgvsp: ENST00000249363.3:c.105C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39480G>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22392G>T
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.105C>A
  hgvsp: ENST00000476782.1:c.105C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39480G>T
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6609
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3834
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile35Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

7-127670592-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670592
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670592
    reference: chr 7
allele count: 3
allele frequency: 2.496837339370131e-5
allele num: 120152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.102C>T
  hgvsp: ENST00000476782.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43962G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.102C>T
  hgvsp: ENST00000249363.3:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-145C>T
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39483G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39483G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22395G>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.102C>T
  hgvsp: ENST00000478726.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4332
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3833
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala34Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

7-127670593-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670593
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670593
    reference: chr 7
allele count: 1
allele frequency: 8.327504080476999e-6
allele num: 120084
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22396G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.101C>G
  hgvsp: ENSP00000249363.3:p.Ala34Gly
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.101C>G
  hgvsp: ENSP00000417795.1:p.Ala34Gly
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-146C>G
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43961G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.101C>G
  hgvsp: ENSP00000418093.1:p.Ala34Gly
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39484G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39484G>C
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19467
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16146
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala34Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

7-127670596-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670596
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670596
    reference: chr 7
allele count: 3
allele frequency: 2.499625056241564e-5
allele num: 120018
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-149C>G
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43958G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.98C>G
  hgvsp: ENSP00000418093.1:p.Ala33Gly
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22399G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39487G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.98C>G
  hgvsp: ENSP00000417795.1:p.Ala33Gly
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39487G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.98C>G
  hgvsp: ENSP00000249363.3:p.Ala33Gly
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4325
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3088
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16148
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala33Gly
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

7-127670601-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670601
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670601
    reference: chr 7
allele count: 3
allele frequency: 2.506181915391298e-5
allele num: 119704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-154G>C
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22404C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.93G>C
  hgvsp: ENST00000249363.3:c.93G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.93G>C
  hgvsp: ENST00000476782.1:c.93G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.93G>C
  hgvsp: ENST00000478726.1:c.93G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39492C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43953C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39492C>G
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3185
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6498
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu31Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

7-127670603-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670603
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670603
    reference: chr 7
allele count: 1
allele frequency: 8.360085607276618e-6
allele num: 119616
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-156C>G
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.91C>G
  hgvsp: ENSP00000249363.3:p.Leu31Val
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22406G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39494G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.91C>G
  hgvsp: ENSP00000418093.1:p.Leu31Val
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.91C>G
  hgvsp: ENSP00000417795.1:p.Leu31Val
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43951G>C
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39494G>C
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11464
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4307
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16147
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu31Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/7-127670610-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670610
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670610
    reference: chr 7
allele count: 2
allele frequency: 1.68967439974317e-5
allele num: 118366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39501C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39501C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43944C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.84G>T
  hgvsp: ENST00000478726.1:c.84G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22413C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.84G>T
  hgvsp: ENST00000249363.3:c.84G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.84G>T
  hgvsp: ENST00000476782.1:c.84G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-163G>T
  variant of: http://identifiers.org/hgnc/15586
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6294
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16146
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val28Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

7-127670616-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670616
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670616
    reference: chr 7
allele count: 34
allele frequency: 2.892041781497737e-4
allele num: 117564
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22419C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39507C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-169G>C
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.78G>C
  hgvsp: ENST00000249363.3:c.78G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.78G>C
  hgvsp: ENST00000476782.1:c.78G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39507C>G
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.78G>C
  hgvsp: ENST00000478726.1:c.78G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43938C>G
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10316
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10169
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 16844
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6216
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3831
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala26Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/7-127670616-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127670616
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 127670616
    reference: chr 7
allele count: 1
allele frequency: 8.506005239699228e-6
allele num: 117564
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000417795
  ensembl transcript: ENST00000478726
  gene symbol: LRRC4
  hgvsc: ENST00000478726.1:c.78G>T
  hgvsp: ENST00000478726.1:c.78G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418254
  ensembl transcript: ENST00000494115
  gene symbol: LRRC4
  hgvsc: ENST00000494115.1:c.-169G>T
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000249363
  ensembl transcript: ENST00000249363
  gene symbol: LRRC4
  hgvsc: ENST00000249363.3:c.78G>T
  hgvsp: ENST00000249363.3:c.78G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000484767
  gene symbol: SND1
  hgvsc: ENST00000484767.1:n.340-43938C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl transcript: ENST00000470723
  gene symbol: SND1
  hgvsc: ENST00000470723.1:n.326+22419C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128594
  ensembl protein: ENSP00000418093
  ensembl transcript: ENST00000476782
  gene symbol: LRRC4
  hgvsc: ENST00000476782.1:c.78G>T
  hgvsp: ENST00000476782.1:c.78G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15586
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000346762
  ensembl transcript: ENST00000354725
  gene symbol: SND1
  hgvsc: ENST00000354725.3:c.1779+39507C>A
  variant of: http://identifiers.org/hgnc/30646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197157
  ensembl protein: ENSP00000419327
  ensembl transcript: ENST00000486037
  gene symbol: SND1
  hgvsc: ENST00000486037.1:c.426+39507C>A
  variant of: http://identifiers.org/hgnc/30646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16159
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala26Ala
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3136
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6882
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503352476021528e-5
allele num: 66518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.705e0

MQRankSum
type: SiteQuality
SIO_000300: -1.206e0

QD
type: SiteQuality
SIO_000300: 8.58e0

VQSLOD
type: SiteQuality
SIO_000300: -9.284e-1

DP
type: SiteQuality
SIO_000300: 2.091683e6

FS
type: SiteQuality
SIO_000300: 7.637e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.92e-1

GenotypeQuality
all individuals: 1967
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15302
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502990951994469e-5
allele num: 66534
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 2.607e0

QD
type: SiteQuality
SIO_000300: 1.39e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 2.092077e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.608000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.733e0

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-2

QD
type: SiteQuality
SIO_000300: 2.892e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.25e-1

DP
type: SiteQuality
SIO_000300: 2.095213e6

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998770504093322e-5
allele num: 66694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.611e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQRankSum
type: SiteQuality
SIO_000300: -4.36e-1

FS
type: SiteQuality
SIO_000300: 5.953e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.21e-1

DP
type: SiteQuality
SIO_000300: 2.09558e6

QD
type: SiteQuality
SIO_000300: 1.22e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6919
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variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.09558e6

FS
type: SiteQuality
SIO_000300: 5.953e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.611e0

QD
type: SiteQuality
SIO_000300: 1.22e1

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 9.009e0

QD
type: SiteQuality
SIO_000300: 7.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 9.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.83e0

DP
type: SiteQuality
SIO_000300: 2.095588e6

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.096013e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.586e0

FS
type: SiteQuality
SIO_000300: 6.97e-1

QD
type: SiteQuality
SIO_000300: 1.1e1

MQRankSum
type: SiteQuality
SIO_000300: -2.781e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.868e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

GenotypeQuality
all individuals: 1976
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.41e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.952e0

ReadPosRankSum
type: SiteQuality
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DP
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.06e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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African
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allele count: 0
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 7.95e-1

ReadPosRankSum
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Other
type: Population
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ClippingRankSum
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
type: Population
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allele num: 906
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele num: 16512
num of homozygotes: 0

InbreedingCoeff
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DP
type: SiteQuality
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
type: SiteQuality
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FS
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MQ
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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African
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allele num: 10404
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.135e0

DP
type: SiteQuality
SIO_000300: 2.096548e6

FS
type: SiteQuality
SIO_000300: 3.237e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.63e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 8.029999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.337e0

VQSLOD
type: SiteQuality
SIO_000300: -5.475e-1

GenotypeQuality
all individuals: 1689
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25150
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

MQ
type: SiteQuality
SIO_000300: 5.991e1

FS
type: SiteQuality
SIO_000300: 7.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-1

DP
type: SiteQuality
SIO_000300: 2.096595e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.58e-1

QD
type: SiteQuality
SIO_000300: 1.244e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.281e0

GenotypeQuality
all individuals: 1690
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2805
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6928
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e-1

FS
type: SiteQuality
SIO_000300: 6.233e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.096724e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.502e0

QD
type: SiteQuality
SIO_000300: 8.73e0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25132
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 1978
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variant carriers: 0

GenotypeQuality
all individuals: 15316
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variant carriers: 1

GenotypeQuality
all individuals: 2807
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.926e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.78e0

DP
type: SiteQuality
SIO_000300: 2.096815e6

QD
type: SiteQuality
SIO_000300: 4.3e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.654e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6722
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1964
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.89e-1

FS
type: SiteQuality
SIO_000300: 8.566000000000001e0

DP
type: SiteQuality
SIO_000300: 2.125e6

MQ
type: SiteQuality
SIO_000300: 5.875e1

VQSLOD
type: SiteQuality
SIO_000300: -1.38e0

QD
type: SiteQuality
SIO_000300: 1.592e1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

GenotypeQuality
all individuals: 176
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5561
bin: 2.5e0
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GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2494
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13433
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2825
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22315
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6044
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.28741904730596e-5
allele num: 60838
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.198e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.747e0

QD
type: SiteQuality
SIO_000300: 1.26e1

MQ
type: SiteQuality
SIO_000300: 5.932e1

FS
type: SiteQuality
SIO_000300: 1.9666e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.54e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-2

DP
type: SiteQuality
SIO_000300: 2.464016e6

GenotypeQuality
all individuals: 2120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3632
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22964
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2877
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6625
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523786304208698e-5
allele num: 65626
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.66e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

FS
type: SiteQuality
SIO_000300: 6.591e1

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

DP
type: SiteQuality
SIO_000300: 2.268221e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.002e0

VQSLOD
type: SiteQuality
SIO_000300: -5.627e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

QD
type: SiteQuality
SIO_000300: 2.44e0

GenotypeQuality
all individuals: 585
bin: 3.25e1
variant carriers: 10

GenotypeQuality
all individuals: 2599
bin: 6.75e1
variant carriers: 16

GenotypeQuality
all individuals: 552
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variant carriers: 9

GenotypeQuality
all individuals: 582
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variant carriers: 12

GenotypeQuality
all individuals: 1239
bin: 7.25e1
variant carriers: 17

GenotypeQuality
all individuals: 1124
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variant carriers: 12

GenotypeQuality
all individuals: 10656
bin: 6.25e1
variant carriers: 10

GenotypeQuality
all individuals: 619
bin: 4.25e1
variant carriers: 10

Other
type: Population
allele count: 26
allele frequency: 5.627705627705628e-2
allele num: 462
num of homozygotes: 0

East Asian
type: Population
allele count: 105
allele frequency: 3.406878650227125e-2
allele num: 3082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1419
allele frequency: 3.819033265152331e-2
allele num: 37156
num of homozygotes: 0

Latino
type: Population
allele count: 131
allele frequency: 3.438320209973753e-2
allele num: 3810
num of homozygotes: 0

African
type: Population
allele count: 337
allele frequency: 9.434490481522956e-2
allele num: 3572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 392
allele frequency: 1.870229007633588e-1
allele num: 2096
num of homozygotes: 0

South Asian
type: Population
allele count: 90
allele frequency: 8.51305334846765e-3
allele num: 10572
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.486935e6

MQ
type: SiteQuality
SIO_000300: 5.809e1

MQRankSum
type: SiteQuality
SIO_000300: -9.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.79e2

FS
type: SiteQuality
SIO_000300: 2.86818e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.649e-1

QD
type: SiteQuality
SIO_000300: 7.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.957e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.34e0

GenotypeQuality
all individuals: 3127
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variant carriers: 1

GenotypeQuality
all individuals: 209
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variant carriers: 10

GenotypeQuality
all individuals: 1987
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variant carriers: 8

GenotypeQuality
all individuals: 15875
bin: 9.75e1
variant carriers: 2188

GenotypeQuality
all individuals: 248
bin: 5.25e1
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GenotypeQuality
all individuals: 258
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variant carriers: 3

GenotypeQuality
all individuals: 17049
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 149
bin: 7.5e0
variant carriers: 2

East Asian
type: Population
allele count: 92
allele frequency: 1.131054831571183e-2
allele num: 8134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 382
allele frequency: 6.993775173928964e-2
allele num: 5462
num of homozygotes: 0

South Asian
type: Population
allele count: 39
allele frequency: 2.397049784880147e-3
allele num: 16270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1322
allele frequency: 2.136462070525873e-2
allele num: 61878
num of homozygotes: 0

Other
type: Population
allele count: 25
allele frequency: 3.063725490196078e-2
allele num: 816
num of homozygotes: 0

Latino
type: Population
allele count: 112
allele frequency: 9.987515605493134e-3
allele num: 11214
num of homozygotes: 0

African
type: Population
allele count: 289
allele frequency: 3.3302604286702e-2
allele num: 8678
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.502e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.944e0

VQSLOD
type: SiteQuality
SIO_000300: -2.045e2

QD
type: SiteQuality
SIO_000300: 9.0e0

DP
type: SiteQuality
SIO_000300: 2.513935e6

MQ
type: SiteQuality
SIO_000300: 5.837e1

FS
type: SiteQuality
SIO_000300: 2.06036e2

MQRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.96e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.96e0

GenotypeQuality
all individuals: 17446
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 198
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GenotypeQuality
all individuals: 107
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GenotypeQuality
all individuals: 16320
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variant carriers: 2190

GenotypeQuality
all individuals: 193
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GenotypeQuality
all individuals: 207
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GenotypeQuality
all individuals: 6195
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GenotypeQuality
all individuals: 3114
bin: 7.25e1
variant carriers: 5

African
type: Population
allele count: 289
allele frequency: 3.191959354981224e-2
allele num: 9054
num of homozygotes: 0

Latino
type: Population
allele count: 113
allele frequency: 9.920983318700614e-3
allele num: 11390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1321
allele frequency: 2.089528630180323e-2
allele num: 63220
num of homozygotes: 0

South Asian
type: Population
allele count: 39
allele frequency: 2.39087788131437e-3
allele num: 16312
num of homozygotes: 0

East Asian
type: Population
allele count: 92
allele frequency: 1.117589893100097e-2
allele num: 8232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 382
allele frequency: 6.24795551193981e-2
allele num: 6114
num of homozygotes: 0

Other
type: Population
allele count: 25
allele frequency: 2.997601918465228e-2
allele num: 834
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.258e0

FS
type: SiteQuality
SIO_000300: 1.62851e2

DP
type: SiteQuality
SIO_000300: 2.472721e6

QD
type: SiteQuality
SIO_000300: 9.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.395e0

MQ
type: SiteQuality
SIO_000300: 5.868e1

VQSLOD
type: SiteQuality
SIO_000300: -1.3e2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e0

MQRankSum
type: SiteQuality
SIO_000300: -1.03e0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 3109
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 122
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GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 6843
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GenotypeQuality
all individuals: 19581
bin: 6.25e1
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.406e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.981e0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

QD
type: SiteQuality
SIO_000300: 1.37e1

DP
type: SiteQuality
SIO_000300: 2.324818e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

GenotypeQuality
all individuals: 6829
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19769
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3329
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4392
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.441e1

DP
type: SiteQuality
SIO_000300: 2.31889e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

GenotypeQuality
all individuals: 19931
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4410
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6861
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16333
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3342
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

DP
type: SiteQuality
SIO_000300: 2.315789e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.813e0

FS
type: SiteQuality
SIO_000300: 5.651e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.273e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

QD
type: SiteQuality
SIO_000300: 8.7e-1

GenotypeQuality
all individuals: 81
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6907
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20204
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16193
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3850
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.009550123130518e-5
allele num: 66596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.312786e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.66e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.663e0

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.95e-1

GenotypeQuality
all individuals: 3335
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3100
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3849
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20118
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.159999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.317e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

DP
type: SiteQuality
SIO_000300: 2.312226e6

FS
type: SiteQuality
SIO_000300: 1.101e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.99e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.711e0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.638568829593693e-4
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.159999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.101e0

DP
type: SiteQuality
SIO_000300: 2.312226e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.711e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.317e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.99e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16183
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6889
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20175
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

DP
type: SiteQuality
SIO_000300: 2.311794e6

QD
type: SiteQuality
SIO_000300: 1.134e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4407
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6887
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20158
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3852
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004627125773691e-5
allele num: 66564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

QD
type: SiteQuality
SIO_000300: 1.233e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 2.311606e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

FS
type: SiteQuality
SIO_000300: 2.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e0

GenotypeQuality
all individuals: 4406
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6875
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3852
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 15
allele frequency: 1.298026998961578e-3
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

FS
type: SiteQuality
SIO_000300: 1.115e0

QD
type: SiteQuality
SIO_000300: 1.277e1

VQSLOD
type: SiteQuality
SIO_000300: 2.52e0

DP
type: SiteQuality
SIO_000300: 2.312113e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

GenotypeQuality
all individuals: 6875
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4407
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16175
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3851
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.113e0

QD
type: SiteQuality
SIO_000300: 1.352e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.38e-1

DP
type: SiteQuality
SIO_000300: 2.310996e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 6.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 6.993e0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3100
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6855
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3337
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20219
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16181
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.305884474364368e-4
allele num: 66548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.158e1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 2.312443e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.583e0

FS
type: SiteQuality
SIO_000300: 1.104e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.05e0

VQSLOD
type: SiteQuality
SIO_000300: -1.468e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: -7.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.015e1

FS
type: SiteQuality
SIO_000300: 6.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.188e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 2.310997e6

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66526
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.323420074349442e-4
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

MQRankSum
type: SiteQuality
SIO_000300: -6.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

QD
type: SiteQuality
SIO_000300: 1.064e1

DP
type: SiteQuality
SIO_000300: 2.310577e6

VQSLOD
type: SiteQuality
SIO_000300: 7.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.801e0

FS
type: SiteQuality
SIO_000300: 2.394e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503262078710802e-5
allele num: 66522
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10358
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

FS
type: SiteQuality
SIO_000300: 1.2312e1

QD
type: SiteQuality
SIO_000300: 1.344e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.485e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.188e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

DP
type: SiteQuality
SIO_000300: 2.309885e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.073120369245719e-5
allele num: 16466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.30983e6

MQ
type: SiteQuality
SIO_000300: 5.94e1

FS
type: SiteQuality
SIO_000300: 4.838e0

QD
type: SiteQuality
SIO_000300: 1.021e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.205e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

MQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.635e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.509921828021648e-5
allele num: 66520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.309978e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 5.912e1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

FS
type: SiteQuality
SIO_000300: 2.879e0

VQSLOD
type: SiteQuality
SIO_000300: 6.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.4253e1

ClippingRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 2.309541e6

QD
type: SiteQuality
SIO_000300: 5.48e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.05234673321507e-4
allele num: 66518
num of homozygotes: 0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

DP
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SIO_000300: 2.309906e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.654373431164318e-5
allele num: 10358
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.215e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503623733197005e-5
allele num: 66506
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.309384e6

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

FS
type: SiteQuality
SIO_000300: 5.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

QD
type: SiteQuality
SIO_000300: 1.116e1

MQRankSum
type: SiteQuality
SIO_000300: 7.58e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66506
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
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allele count: 6
allele frequency: 6.976744186046512e-4
allele num: 8600
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.924e1

FS
type: SiteQuality
SIO_000300: 5.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e0

DP
type: SiteQuality
SIO_000300: 2.309384e6

QD
type: SiteQuality
SIO_000300: 1.116e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
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allele frequency: 3.045437933974906e-4
allele num: 16418
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.03e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.127e0

DP
type: SiteQuality
SIO_000300: 2.307575e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.22e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.279e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.513993379476377e-5
allele num: 66460
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.731601731601732e-4
allele num: 11550
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.417e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.306928e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.02e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505842669557885e-5
allele num: 66408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.11e-1

MQ
type: SiteQuality
SIO_000300: 5.99e1

FS
type: SiteQuality
SIO_000300: 6.245e0

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 2.303255e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506069459923492e-5
allele num: 66398
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.794e0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -1.14e-1

BaseQRankSum
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SIO_000300: -4.535e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

MQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

DP
type: SiteQuality
SIO_000300: 2.302428e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.96e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506205566935775e-5
allele num: 66392
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -3.812e0

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66372
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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QD
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MQRankSum
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VQSLOD
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SIO_000300: 5.52e-1

InbreedingCoeff
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FS
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.506387081224391e-5
allele num: 66384
num of homozygotes: 0

FS
type: SiteQuality
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DP
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VQSLOD
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BaseQRankSum
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MQRankSum
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QD
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ClippingRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66370
num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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num of homozygotes: 0

BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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VQSLOD
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QD
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FS
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.012138919846983e-5
allele num: 66398
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South Asian
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BaseQRankSum
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SIO_000300: 1.23e0

MQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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FS
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DP
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SIO_000300: 2.301398e6

QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.505797319680771e-5
allele num: 66410
num of homozygotes: 0

African
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allele num: 10354
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FS
type: SiteQuality
SIO_000300: 6.33e-1

MQ
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ClippingRankSum
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SIO_000300: -1.327e0

InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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SIO_000300: 2.301274e6

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 9.659969088098918e-5
allele num: 10352
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 900
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East Asian
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BaseQRankSum
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SIO_000300: -4.029e0

MQ
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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SIO_000300: 5.73e-1

QD
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ReadPosRankSum
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DP
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
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East Asian
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allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66384
num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
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MQ
type: SiteQuality
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BaseQRankSum
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QD
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MQRankSum
type: SiteQuality
SIO_000300: -2.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

FS
type: SiteQuality
SIO_000300: 2.115e0

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506795648374167e-5
allele num: 66366
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African
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QD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
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MQ
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SIO_000300: 5.917e1

FS
type: SiteQuality
SIO_000300: 5.284e0

ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.509297271190534e-5
allele num: 66256
num of homozygotes: 0

South Asian
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Other
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ClippingRankSum
type: SiteQuality
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QD
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10338
num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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East Asian
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European (Non-Finnish)
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South Asian
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DP
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QD
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FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66264
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African
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Other
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East Asian
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Latino
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InbreedingCoeff
type: SiteQuality
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FS
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MQ
type: SiteQuality
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 3.868471953578336e-4
allele num: 10340
num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

Other
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Latino
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allele num: 11560
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.238850346878097e-4
allele num: 16144
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African
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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QD
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66152
num of homozygotes: 0

South Asian
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allele frequency: 6.212723658051689e-5
allele num: 16096
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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MQRankSum
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BaseQRankSum
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MQ
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VQSLOD
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66150
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.221226825930074e-5
allele num: 16074
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VQSLOD
type: SiteQuality
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DP
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MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele num: 16074
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.290347e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
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SIO_000300: 9.88e-1

MQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66116
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 2.594258042199931e-4
allele num: 11564
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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QD
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele num: 15992
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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Other
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.51308821304282e-5
allele num: 66090
num of homozygotes: 0

ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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MQRankSum
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FS
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MQ
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QD
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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allele num: 66070
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East Asian
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Other
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South Asian
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European (Finnish)
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MQ
type: SiteQuality
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FS
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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DP
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ReadPosRankSum
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VQSLOD
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Other
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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allele num: 65900
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European (Finnish)
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African
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Other
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South Asian
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InbreedingCoeff
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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DP
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QD
type: SiteQuality
SIO_000300: 1.301e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.652e0

VQSLOD
type: SiteQuality
SIO_000300: 2.6e0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3084
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2182
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3165
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65416
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73190162798753e-4
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.082e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-1

DP
type: SiteQuality
SIO_000300: 2.253425e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.521e0

VQSLOD
type: SiteQuality
SIO_000300: 3.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.82e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 3.242e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
all individuals: 158
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4279
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2183
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16159
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 3082
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3144
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3335
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 34
allele frequency: 2.320819112627986e-3
allele num: 14650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65156
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

DP
type: SiteQuality
SIO_000300: 2.240584e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.394e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.35e-1