11-85692771-GTATAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692771
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692766
    reference: chr 11
allele count: 9
allele frequency: 7.544639114762344e-5
allele num: 119290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.489+12_489+16delATATA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.345+12_345+16delATATA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.621+12_621+16delATATA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.183+12_183+16delATATA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1679+12_1679+16delATATA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.771+12_771+16delATATA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.619+12_619+16delATATA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.265+12_265+16delATATA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1679+12_1679+16delATATA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1376+12_1376+16delATATA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1658+12_1658+16delATATA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1529+12_1529+16delATATA
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23466
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: GTATAT
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

11-85692771-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692771
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692771
    reference: chr 11
allele count: 1
allele frequency: 8.382932349735938e-6
allele num: 119290
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1679+17C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.489+17C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.619+17C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1658+17C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1529+17C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1679+17C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.771+17C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.345+17C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.183+17C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1376+17C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.621+17C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.265+17C>T
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

11-85692772-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692772
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692772
    reference: chr 11
allele count: 1
allele frequency: 8.380543729677181e-6
allele num: 119324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1529+16A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1679+16A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.265+16A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.621+16A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.345+16A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1679+16A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.771+16A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.619+16A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.489+16A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.183+16A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1376+16A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1658+16A>G
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

11-85692776-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692776
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692776
    reference: chr 11
allele count: 3
allele frequency: 2.511595197829982e-5
allele num: 119446
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.619+12A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1679+12A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1529+12A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1376+12A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.265+12A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.489+12A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.345+12A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.771+12A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.621+12A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1679+12A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.183+12A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1658+12A>C
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24067
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7901
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

11-85692788-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692788
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692788
    reference: chr 11
allele count: 1
allele frequency: 8.339588024351597e-6
allele num: 119910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.621A>G
  hgvsp: ENSP00000435807.1:p.Asn208Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1529A>G
  hgvsp: ENSP00000436958.1:p.Asn510Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.265A>G
  hgvsp: ENSP00000436852.1:p.Asn89Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1679A>G
  hgvsp: ENSP00000348718.5:p.Asn560Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.489A>G
  hgvsp: ENSP00000432976.1:p.Asn164Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.619A>G
  hgvsp: ENSP00000432509.1:p.Asn207Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1658A>G
  hgvsp: ENSP00000433846.1:p.Asn553Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.345A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1679A>G
  hgvsp: ENSP00000377015.3:p.Asn560Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1376A>G
  hgvsp: ENSP00000434884.1:p.Asn459Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.183A>G
  hgvsp: ENSP00000435311.1:p.Asn62Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.771A>G
  hgvsp: ENSP00000435737.1:p.Asn258Ser
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14581
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn560Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-85692796-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692796
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692796
    reference: chr 11
allele count: 1
allele frequency: 8.32126749546491e-6
allele num: 120174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1521C>T
  hgvsp: ENST00000532317.1:c.1521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.257C>T
  hgvsp: ENST00000530692.1:c.257C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1368C>T
  hgvsp: ENST00000528398.1:c.1368C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.611C>T
  hgvsp: ENST00000529016.1:c.611C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1671C>T
  hgvsp: ENST00000356360.5:c.1671C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.613C>T
  hgvsp: ENST00000529760.1:c.613C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.175C>T
  hgvsp: ENST00000532603.1:c.175C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1671C>T
  hgvsp: ENST00000393346.3:c.1671C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.481C>T
  hgvsp: ENST00000526961.1:c.481C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1650C>T
  hgvsp: ENST00000526033.1:c.1650C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.763C>T
  hgvsp: ENST00000530542.1:c.763C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.337C>T
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr557Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

11-85692805-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692805
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692805
    reference: chr 11
allele count: 1
allele frequency: 8.302337938363443e-6
allele num: 120448
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.166A>T
  hgvsp: ENST00000532603.1:c.166A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.602A>T
  hgvsp: ENST00000529016.1:c.602A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.754A>T
  hgvsp: ENST00000530542.1:c.754A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.472A>T
  hgvsp: ENST00000526961.1:c.472A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1641A>T
  hgvsp: ENST00000526033.1:c.1641A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.248A>T
  hgvsp: ENST00000530692.1:c.248A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1662A>T
  hgvsp: ENST00000356360.5:c.1662A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1512A>T
  hgvsp: ENST00000532317.1:c.1512A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1359A>T
  hgvsp: ENST00000528398.1:c.1359A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1662A>T
  hgvsp: ENST00000393346.3:c.1662A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.328A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.604A>T
  hgvsp: ENST00000529760.1:c.604A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15145
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly554Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

11-85692807-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692807
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692807
    reference: chr 11
allele count: 3
allele frequency: 2.490329221523085e-5
allele num: 120466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.752G>A
  hgvsp: ENSP00000435737.1:p.Gly252Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.600G>A
  hgvsp: ENSP00000432509.1:p.Gly201Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.602G>A
  hgvsp: ENSP00000435807.1:p.Gly202Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.470G>A
  hgvsp: ENSP00000432976.1:p.Gly158Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1660G>A
  hgvsp: ENSP00000348718.5:p.Gly554Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1510G>A
  hgvsp: ENSP00000436958.1:p.Gly504Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.164G>A
  hgvsp: ENSP00000435311.1:p.Gly56Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1357G>A
  hgvsp: ENSP00000434884.1:p.Gly453Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.246G>A
  hgvsp: ENSP00000436852.1:p.Gly83Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1660G>A
  hgvsp: ENSP00000377015.3:p.Gly554Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1639G>A
  hgvsp: ENSP00000433846.1:p.Gly547Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.326G>A
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15231
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24824
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly554Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

11-85692808-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692808
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692808
    reference: chr 11
allele count: 2
allele frequency: 1.659806134643474e-5
allele num: 120496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.599C>T
  hgvsp: ENST00000529016.1:c.599C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.163C>T
  hgvsp: ENST00000532603.1:c.163C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.601C>T
  hgvsp: ENST00000529760.1:c.601C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1659C>T
  hgvsp: ENST00000356360.5:c.1659C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.325C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.469C>T
  hgvsp: ENST00000526961.1:c.469C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1638C>T
  hgvsp: ENST00000526033.1:c.1638C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1509C>T
  hgvsp: ENST00000532317.1:c.1509C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1659C>T
  hgvsp: ENST00000393346.3:c.1659C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.245C>T
  hgvsp: ENST00000530692.1:c.245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1356C>T
  hgvsp: ENST00000528398.1:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.751C>T
  hgvsp: ENST00000530542.1:c.751C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile553Ile
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

11-85692810-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692810
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692810
    reference: chr 11
allele count: 1
allele frequency: 8.29324929507381e-6
allele num: 120580
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.599A>G
  hgvsp: ENSP00000435807.1:p.Ile201Val
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1657A>G
  hgvsp: ENSP00000348718.5:p.Ile553Val
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1657A>G
  hgvsp: ENSP00000377015.3:p.Ile553Val
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.323A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1354A>G
  hgvsp: ENSP00000434884.1:p.Ile452Val
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.467A>G
  hgvsp: ENSP00000432976.1:p.Ile157Val
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.597A>G
  hgvsp: ENSP00000432509.1:p.Ile200Val
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1507A>G
  hgvsp: ENSP00000436958.1:p.Ile503Val
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.749A>G
  hgvsp: ENSP00000435737.1:p.Ile251Val
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.243A>G
  hgvsp: ENSP00000436852.1:p.Ile82Val
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.161A>G
  hgvsp: ENSP00000435311.1:p.Ile55Val
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1636A>G
  hgvsp: ENSP00000433846.1:p.Ile546Val
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile553Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

11-85692812-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692812
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692812
    reference: chr 11
allele count: 1
allele frequency: 8.291461452995706e-6
allele num: 120606
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.595G>C
  hgvsp: ENSP00000432509.1:p.Gly199Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.465G>C
  hgvsp: ENSP00000432976.1:p.Gly156Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.241G>C
  hgvsp: ENSP00000436852.1:p.Gly81Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.747G>C
  hgvsp: ENSP00000435737.1:p.Gly250Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1352G>C
  hgvsp: ENSP00000434884.1:p.Gly451Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1655G>C
  hgvsp: ENSP00000348718.5:p.Gly552Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1655G>C
  hgvsp: ENSP00000377015.3:p.Gly552Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.159G>C
  hgvsp: ENSP00000435311.1:p.Gly54Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1505G>C
  hgvsp: ENSP00000436958.1:p.Gly502Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1634G>C
  hgvsp: ENSP00000433846.1:p.Gly545Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.597G>C
  hgvsp: ENSP00000435807.1:p.Gly200Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.321G>C
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly552Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-85692813-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692813
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692813
    reference: chr 11
allele count: 1
allele frequency: 8.290911502810618e-6
allele num: 120614
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.464G>C
  hgvsp: ENSP00000432976.1:p.Gly156Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.320G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.594G>C
  hgvsp: ENSP00000432509.1:p.Gly199Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1633G>C
  hgvsp: ENSP00000433846.1:p.Gly545Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.158G>C
  hgvsp: ENSP00000435311.1:p.Gly54Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1351G>C
  hgvsp: ENSP00000434884.1:p.Gly451Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.596G>C
  hgvsp: ENSP00000435807.1:p.Gly200Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1504G>C
  hgvsp: ENSP00000436958.1:p.Gly502Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.746G>C
  hgvsp: ENSP00000435737.1:p.Gly250Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.240G>C
  hgvsp: ENSP00000436852.1:p.Gly81Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1654G>C
  hgvsp: ENSP00000377015.3:p.Gly552Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1654G>C
  hgvsp: ENSP00000348718.5:p.Gly552Arg
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly552Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

11-85692813-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692813
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692813
    reference: chr 11
allele count: 4
allele frequency: 3.316364601124247e-5
allele num: 120614
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1633G>A
  hgvsp: ENSP00000433846.1:p.Gly545Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1351G>A
  hgvsp: ENSP00000434884.1:p.Gly451Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.464G>A
  hgvsp: ENSP00000432976.1:p.Gly156Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.594G>A
  hgvsp: ENSP00000432509.1:p.Gly199Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.158G>A
  hgvsp: ENSP00000435311.1:p.Gly54Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1654G>A
  hgvsp: ENSP00000377015.3:p.Gly552Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.596G>A
  hgvsp: ENSP00000435807.1:p.Gly200Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1654G>A
  hgvsp: ENSP00000348718.5:p.Gly552Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1504G>A
  hgvsp: ENSP00000436958.1:p.Gly502Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.240G>A
  hgvsp: ENSP00000436852.1:p.Gly81Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.746G>A
  hgvsp: ENSP00000435737.1:p.Gly250Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.320G>A
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly552Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

11-85692828-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692828
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692828
    reference: chr 11
allele count: 1
allele frequency: 8.275131574592036e-6
allele num: 120844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1346-10C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1649-10C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1649-10C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1628-10C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.153-10C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.589-10C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.315-10C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1499-10C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.235-10C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.591-10C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.741-10C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.459-10C>T
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

11-85692840-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692840
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692840
    reference: chr 11
allele count: 3
allele frequency: 2.479092982514131e-5
allele num: 121012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1628-22T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.589-22T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1499-22T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.153-22T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.591-22T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1346-22T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1649-22T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.741-22T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.235-22T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1649-22T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.459-22T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.315-22T>C
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23955
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

11-85692845-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692845
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692845
    reference: chr 11
allele count: 1
allele frequency: 8.260093834665961e-6
allele num: 121064
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.153-27T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1649-27T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1628-27T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1499-27T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.235-27T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.589-27T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.741-27T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.459-27T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1649-27T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1346-27T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.591-27T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.315-27T>C
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

11-85692847-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692847
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692847
    reference: chr 11
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.459-29A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1628-29A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.235-29A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.589-29A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1649-29A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1649-29A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1499-29A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.153-29A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.591-29A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.741-29A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1346-29A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.315-29A>G
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16329
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

11-85692848-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692848
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692848
    reference: chr 11
allele count: 1
allele frequency: 8.259411599517651e-6
allele num: 121074
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1649-30A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1499-30A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1346-30A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.589-30A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.741-30A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.459-30A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1649-30A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.235-30A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.591-30A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1628-30A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.315-30A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.153-30A>G
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

11-85692850-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692850
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692850
    reference: chr 11
allele count: 9
allele frequency: 7.431751746461661e-5
allele num: 121102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1346-32T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.153-32T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.459-32T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1649-32T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.315-32T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1499-32T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.589-32T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.741-32T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1649-32T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.591-32T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1628-32T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.235-32T>C
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16447
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

11-85692856-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692856
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692856
    reference: chr 11
allele count: 2
allele frequency: 1.650519088253256e-5
allele num: 121174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.591-38G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1649-38G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.153-38G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1628-38G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.235-38G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1499-38G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.741-38G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.589-38G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1649-38G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.459-38G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.315-38G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1346-38G>A
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9260
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

11-85692857-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692857
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692857
    reference: chr 11
allele count: 2
allele frequency: 1.650219479190732e-5
allele num: 121196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1628-39C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1649-39C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.459-39C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.153-39C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.589-39C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1649-39C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.235-39C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.315-39C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1346-39C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1499-39C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.591-39C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.741-39C>T
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23554
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

11-85692859-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692859
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692859
    reference: chr 11
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.459-41C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.591-41C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.315-41C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.153-41C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1649-41C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1346-41C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.589-41C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.235-41C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1649-41C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.741-41C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1499-41C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1628-41C>G
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23556
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

11-85692861-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692861
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692861
    reference: chr 11
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.589-43G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.315-43G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1649-43G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1649-43G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1499-43G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.459-43G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.591-43G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.235-43G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1346-43G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.153-43G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.741-43G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1628-43G>A
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

11-85692862-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692862
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692862
    reference: chr 11
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1649-44C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1649-44C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.235-44C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1628-44C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.741-44C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1499-44C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.459-44C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1346-44C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.589-44C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.153-44C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.591-44C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.315-44C>T
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

11-85692868-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692868
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692868
    reference: chr 11
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1498+47A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.234+47A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1627+47A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.152+47A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.458+47A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.740+47A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1648+47A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.590+47A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1345+47A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.314+47A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.588+47A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1648+47A>T
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum

11-85692882-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692882
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692882
    reference: chr 11
allele count: 3
allele frequency: 2.472595400972554e-5
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.588+33T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.740+33T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.234+33T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.590+33T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.458+33T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.152+33T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1648+33T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1345+33T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1498+33T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1627+33T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.314+33T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1648+33T>A
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9462
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-85692883-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692883
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692883
    reference: chr 11
allele count: 9
allele frequency: 7.417541661859001e-5
allele num: 121334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1498+32T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.590+32T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1648+32T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.588+32T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1627+32T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1648+32T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.458+32T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1345+32T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.152+32T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.234+32T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.740+32T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.314+32T>G
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16939
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

11-85692885-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692885
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692885
    reference: chr 11
allele count: 2
allele frequency: 1.648288252649623e-5
allele num: 121338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1648+30T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1498+30T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1648+30T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.590+30T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.234+30T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.740+30T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.152+30T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1627+30T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.458+30T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.314+30T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1345+30T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.588+30T>C
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

11-85692889-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692889
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692889
    reference: chr 11
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.740+26C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.458+26C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.588+26C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.314+26C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.590+26C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1648+26C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1627+26C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1498+26C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.234+26C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.152+26C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1648+26C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1345+26C>T
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

11-85692895-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692895
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692895
    reference: chr 11
allele count: 11
allele frequency: 9.063344538922946e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1345+20G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.458+20G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.152+20G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.588+20G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1627+20G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1498+20G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.234+20G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1648+20G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.590+20G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.314+20G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.740+20G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1648+20G>A
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

11-85692896-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692896
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692896
    reference: chr 11
allele count: 5
allele frequency: 4.119634176485128e-5
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.458+19C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1498+19C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1345+19C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.152+19C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1627+19C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.314+19C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1648+19C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.588+19C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.740+19C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.590+19C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1648+19C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.234+19C>T
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9511
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

11-85692902-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692902
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692902
    reference: chr 11
allele count: 3
allele frequency: 2.471536142096851e-5
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1648+13T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.234+13T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1648+13T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1345+13T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1498+13T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.740+13T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.314+13T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1627+13T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.588+13T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.590+13T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.152+13T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.458+13T>C
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

11-85692907-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692907
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692907
    reference: chr 11
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1648+8G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1648+8G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.740+8G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.588+8G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.590+8G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1627+8G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.152+8G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.458+8G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.314+8G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1498+8G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.234+8G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1345+8G>A
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1648+8G>A
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS

11-85692908-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692908
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692908
    reference: chr 11
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.588+7A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.314+7A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1627+7A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.740+7A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1648+7A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.590+7A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.152+7A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.234+7A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.458+7A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1498+7A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1345+7A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1648+7A>G
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1648+7A>G
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

11-85692912-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692912
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692912
    reference: chr 11
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.588+3A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.152+3A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1648+3A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1648+3A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1498+3A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.234+3A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.740+3A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1345+3A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.590+3A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1627+3A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.314+3A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.458+3A>G
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1648+3A>G
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

11-85692916-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692916
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692916
    reference: chr 11
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.233C>T
  hgvsp: ENST00000530692.1:c.233C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1647C>T
  hgvsp: ENST00000356360.5:c.1647C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1497C>T
  hgvsp: ENST00000532317.1:c.1497C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1647C>T
  hgvsp: ENST00000393346.3:c.1647C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.457C>T
  hgvsp: ENST00000526961.1:c.457C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1344C>T
  hgvsp: ENST00000528398.1:c.1344C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.589C>T
  hgvsp: ENST00000529760.1:c.589C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.587C>T
  hgvsp: ENST00000529016.1:c.587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.313C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.151C>T
  hgvsp: ENST00000532603.1:c.151C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1626C>T
  hgvsp: ENST00000526033.1:c.1626C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.739C>T
  hgvsp: ENST00000530542.1:c.739C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1647C>T
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

11-85692926-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692926
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692926
    reference: chr 11
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.579A>G
  hgvsp: ENSP00000435807.1:p.Asn194Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.141A>G
  hgvsp: ENSP00000435311.1:p.Asn48Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.223A>G
  hgvsp: ENSP00000436852.1:p.Asn75Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1616A>G
  hgvsp: ENSP00000433846.1:p.Asn539Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1487A>G
  hgvsp: ENSP00000436958.1:p.Asn496Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.729A>G
  hgvsp: ENSP00000435737.1:p.Asn244Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.447A>G
  hgvsp: ENSP00000432976.1:p.Asn150Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.577A>G
  hgvsp: ENSP00000432509.1:p.Asn193Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1637A>G
  hgvsp: ENSP00000377015.3:p.Asn546Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1334A>G
  hgvsp: ENSP00000434884.1:p.Asn445Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1637A>G
  hgvsp: ENSP00000348718.5:p.Asn546Ser
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.303A>G
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asn546Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

11-85692946-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692946
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692946
    reference: chr 11
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.203C>T
  hgvsp: ENST00000530692.1:c.203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1314C>T
  hgvsp: ENST00000528398.1:c.1314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1467C>T
  hgvsp: ENST00000532317.1:c.1467C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.283C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.427C>T
  hgvsp: ENST00000526961.1:c.427C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1617C>T
  hgvsp: ENST00000356360.5:c.1617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.557C>T
  hgvsp: ENST00000529016.1:c.557C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.121C>T
  hgvsp: ENST00000532603.1:c.121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.559C>T
  hgvsp: ENST00000529760.1:c.559C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1617C>T
  hgvsp: ENST00000393346.3:c.1617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.709C>T
  hgvsp: ENST00000530542.1:c.709C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1596C>T
  hgvsp: ENST00000526033.1:c.1596C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp539Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/11-85692949-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692949
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692949
    reference: chr 11
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1464T>G
  hgvsp: ENSP00000436958.1:p.Asp488Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.118T>G
  hgvsp: ENSP00000435311.1:p.Asp40Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.706T>G
  hgvsp: ENSP00000435737.1:p.Asp236Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.424T>G
  hgvsp: ENSP00000432976.1:p.Asp142Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1614T>G
  hgvsp: ENSP00000348718.5:p.Asp538Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.554T>G
  hgvsp: ENSP00000432509.1:p.Asp185Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.280T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1311T>G
  hgvsp: ENSP00000434884.1:p.Asp437Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1593T>G
  hgvsp: ENSP00000433846.1:p.Asp531Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1614T>G
  hgvsp: ENSP00000377015.3:p.Asp538Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.556T>G
  hgvsp: ENSP00000435807.1:p.Asp186Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.200T>G
  hgvsp: ENSP00000436852.1:p.Asp67Glu
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp538Glu
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

11-85692958-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692958
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692958
    reference: chr 11
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.697A>C
  hgvsp: ENSP00000435737.1:p.Leu233Phe
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.545A>C
  hgvsp: ENSP00000432509.1:p.Leu182Phe
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1302A>C
  hgvsp: ENSP00000434884.1:p.Leu434Phe
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.547A>C
  hgvsp: ENSP00000435807.1:p.Leu183Phe
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1455A>C
  hgvsp: ENSP00000436958.1:p.Leu485Phe
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.415A>C
  hgvsp: ENSP00000432976.1:p.Leu139Phe
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.191A>C
  hgvsp: ENSP00000436852.1:p.Leu64Phe
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1605A>C
  hgvsp: ENSP00000377015.3:p.Leu535Phe
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1584A>C
  hgvsp: ENSP00000433846.1:p.Leu528Phe
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.109A>C
  hgvsp: ENSP00000435311.1:p.Leu37Phe
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1605A>C
  hgvsp: ENSP00000348718.5:p.Leu535Phe
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.271A>C
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu535Phe
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

11-85692965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692965
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692965
    reference: chr 11
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1295G>A
  hgvsp: ENSP00000434884.1:p.Ser432Asn
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.408G>A
  hgvsp: ENSP00000432976.1:p.Ser137Asn
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.690G>A
  hgvsp: ENSP00000435737.1:p.Ser231Asn
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1598G>A
  hgvsp: ENSP00000377015.3:p.Ser533Asn
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1448G>A
  hgvsp: ENSP00000436958.1:p.Ser483Asn
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.538G>A
  hgvsp: ENSP00000432509.1:p.Ser180Asn
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.102G>A
  hgvsp: ENSP00000435311.1:p.Ser35Asn
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.264G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1598G>A
  hgvsp: ENSP00000348718.5:p.Ser533Asn
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1577G>A
  hgvsp: ENSP00000433846.1:p.Ser526Asn
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.184G>A
  hgvsp: ENSP00000436852.1:p.Ser62Asn
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.540G>A
  hgvsp: ENSP00000435807.1:p.Ser181Asn
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser533Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

11-85692966-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692966
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692966
    reference: chr 11
allele count: 39
allele frequency: 3.212520593080725e-4
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.689A>G
  hgvsp: ENSP00000435737.1:p.Ser231Gly
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.407A>G
  hgvsp: ENSP00000432976.1:p.Ser137Gly
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1597A>G
  hgvsp: ENSP00000348718.5:p.Ser533Gly
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.537A>G
  hgvsp: ENSP00000432509.1:p.Ser180Gly
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1597A>G
  hgvsp: ENSP00000377015.3:p.Ser533Gly
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1447A>G
  hgvsp: ENSP00000436958.1:p.Ser483Gly
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1576A>G
  hgvsp: ENSP00000433846.1:p.Ser526Gly
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.183A>G
  hgvsp: ENSP00000436852.1:p.Ser62Gly
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.539A>G
  hgvsp: ENSP00000435807.1:p.Ser181Gly
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.101A>G
  hgvsp: ENSP00000435311.1:p.Ser35Gly
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.263A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1294A>G
  hgvsp: ENSP00000434884.1:p.Ser432Gly
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser533Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

11-85692977-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692977
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692977
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.528A>T
  hgvsp: ENSP00000435807.1:p.Lys177Ile
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.90A>T
  hgvsp: ENSP00000435311.1:p.Lys31Ile
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.526A>T
  hgvsp: ENSP00000432509.1:p.Lys176Ile
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1565A>T
  hgvsp: ENSP00000433846.1:p.Lys522Ile
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1283A>T
  hgvsp: ENSP00000434884.1:p.Lys428Ile
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.396A>T
  hgvsp: ENSP00000432976.1:p.Lys133Ile
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.252A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1436A>T
  hgvsp: ENSP00000436958.1:p.Lys479Ile
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1586A>T
  hgvsp: ENSP00000348718.5:p.Lys529Ile
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.172A>T
  hgvsp: ENSP00000436852.1:p.Lys58Ile
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.678A>T
  hgvsp: ENSP00000435737.1:p.Lys227Ile
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1586A>T
  hgvsp: ENSP00000377015.3:p.Lys529Ile
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys529Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

11-85692977-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692977
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692977
    reference: chr 11
allele count: 11
allele frequency: 9.060507717905211e-5
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.172A>G
  hgvsp: ENSP00000436852.1:p.Lys58Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1586A>G
  hgvsp: ENSP00000377015.3:p.Lys529Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1436A>G
  hgvsp: ENSP00000436958.1:p.Lys479Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.678A>G
  hgvsp: ENSP00000435737.1:p.Lys227Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1283A>G
  hgvsp: ENSP00000434884.1:p.Lys428Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.252A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.396A>G
  hgvsp: ENSP00000432976.1:p.Lys133Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.526A>G
  hgvsp: ENSP00000432509.1:p.Lys176Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.90A>G
  hgvsp: ENSP00000435311.1:p.Lys31Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.528A>G
  hgvsp: ENSP00000435807.1:p.Lys177Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1586A>G
  hgvsp: ENSP00000348718.5:p.Lys529Arg
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1565A>G
  hgvsp: ENSP00000433846.1:p.Lys522Arg
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Lys529Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/11-85692985-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692985
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692985
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1275T>G
  hgvsp: ENST00000528398.1:c.1275T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.388T>G
  hgvsp: ENST00000526961.1:c.388T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.164T>G
  hgvsp: ENST00000530692.1:c.164T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1578T>G
  hgvsp: ENST00000393346.3:c.1578T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1428T>G
  hgvsp: ENST00000532317.1:c.1428T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1578T>G
  hgvsp: ENST00000356360.5:c.1578T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.244T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.518T>G
  hgvsp: ENST00000529016.1:c.518T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.670T>G
  hgvsp: ENST00000530542.1:c.670T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.82T>G
  hgvsp: ENST00000532603.1:c.82T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1557T>G
  hgvsp: ENST00000526033.1:c.1557T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.520T>G
  hgvsp: ENST00000529760.1:c.520T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro526Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

11-85692988-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692988
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692988
    reference: chr 11
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.79T>C
  hgvsp: ENST00000532603.1:c.79T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.515T>C
  hgvsp: ENST00000529016.1:c.515T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.517T>C
  hgvsp: ENST00000529760.1:c.517T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1272T>C
  hgvsp: ENST00000528398.1:c.1272T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.385T>C
  hgvsp: ENST00000526961.1:c.385T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.667T>C
  hgvsp: ENST00000530542.1:c.667T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1554T>C
  hgvsp: ENST00000526033.1:c.1554T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.241T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1575T>C
  hgvsp: ENST00000393346.3:c.1575T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1575T>C
  hgvsp: ENST00000356360.5:c.1575T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1425T>C
  hgvsp: ENST00000532317.1:c.1425T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.161T>C
  hgvsp: ENST00000530692.1:c.161T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu525Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

11-85692991-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85692991
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85692991
    reference: chr 11
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1572C>A
  hgvsp: ENSP00000377015.3:p.Asn524Lys
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.514C>A
  hgvsp: ENSP00000435807.1:p.Asn172Lys
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.664C>A
  hgvsp: ENSP00000435737.1:p.Asn222Lys
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.238C>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.382C>A
  hgvsp: ENSP00000432976.1:p.Asn128Lys
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1572C>A
  hgvsp: ENSP00000348718.5:p.Asn524Lys
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.512C>A
  hgvsp: ENSP00000432509.1:p.Asn171Lys
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1551C>A
  hgvsp: ENSP00000433846.1:p.Asn517Lys
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.158C>A
  hgvsp: ENSP00000436852.1:p.Asn53Lys
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1422C>A
  hgvsp: ENSP00000436958.1:p.Asn474Lys
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.76C>A
  hgvsp: ENSP00000435311.1:p.Asn26Lys
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1269C>A
  hgvsp: ENSP00000434884.1:p.Asn423Lys
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn524Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-85693002-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693002
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693002
    reference: chr 11
allele count: 6
allele frequency: 4.942095118857387e-5
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1561C>G
  hgvsp: ENSP00000377015.3:p.Gln521Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1411C>G
  hgvsp: ENSP00000436958.1:p.Gln471Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.371C>G
  hgvsp: ENSP00000432976.1:p.Gln125Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.501C>G
  hgvsp: ENSP00000432509.1:p.Gln168Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.65C>G
  hgvsp: ENSP00000435311.1:p.Gln23Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.147C>G
  hgvsp: ENSP00000436852.1:p.Gln50Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.227C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1258C>G
  hgvsp: ENSP00000434884.1:p.Gln420Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1561C>G
  hgvsp: ENSP00000348718.5:p.Gln521Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1540C>G
  hgvsp: ENSP00000433846.1:p.Gln514Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.503C>G
  hgvsp: ENSP00000435807.1:p.Gln169Glu
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.653C>G
  hgvsp: ENSP00000435737.1:p.Gln219Glu
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23162
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln521Glu
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

11-85693015-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693015
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693015
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.640A>G
  hgvsp: ENST00000530542.1:c.640A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.134A>G
  hgvsp: ENST00000530692.1:c.134A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1548A>G
  hgvsp: ENST00000393346.3:c.1548A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.214A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1245A>G
  hgvsp: ENST00000528398.1:c.1245A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1548A>G
  hgvsp: ENST00000356360.5:c.1548A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.488A>G
  hgvsp: ENST00000529016.1:c.488A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1398A>G
  hgvsp: ENST00000532317.1:c.1398A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.358A>G
  hgvsp: ENST00000526961.1:c.358A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1527A>G
  hgvsp: ENST00000526033.1:c.1527A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.490A>G
  hgvsp: ENST00000529760.1:c.490A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.52A>G
  hgvsp: ENST00000532603.1:c.52A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro516Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

11-85693034-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693034
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693034
    reference: chr 11
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.195T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.118-3T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1379T>C
  hgvsp: ENSP00000436958.1:p.Leu460Pro
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1226T>C
  hgvsp: ENSP00000434884.1:p.Leu409Pro
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1529T>C
  hgvsp: ENSP00000348718.5:p.Leu510Pro
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.469T>C
  hgvsp: ENSP00000432509.1:p.Leu157Pro
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.36-3T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1508T>C
  hgvsp: ENSP00000433846.1:p.Leu503Pro
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.342-3T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.624-3T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1529T>C
  hgvsp: ENSP00000377015.3:p.Leu510Pro
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.474-3T>C
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu510Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

11-85693046-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693046
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693046
    reference: chr 11
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1214G>C
  hgvsp: ENSP00000434884.1:p.Gly405Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.457G>C
  hgvsp: ENSP00000432509.1:p.Gly153Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1517G>C
  hgvsp: ENSP00000377015.3:p.Gly506Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.474-15G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.36-15G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1496G>C
  hgvsp: ENSP00000433846.1:p.Gly499Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.624-15G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1517G>C
  hgvsp: ENSP00000348718.5:p.Gly506Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.342-15G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.183G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1367G>C
  hgvsp: ENSP00000436958.1:p.Gly456Ala
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.118-15G>C
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly506Ala
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

11-85693050-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693050
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693050
    reference: chr 11
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1367-4T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.179T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.457-4T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1517-4T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.342-19T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1496-4T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.36-19T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1517-4T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.474-19T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1214-4T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.118-19T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.624-19T>C
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.1517-4T>C
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/11-85693057-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693057
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693057
    reference: chr 11
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1517-11G>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1214-11G>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.172G>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.36-26G>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1496-11G>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1517-11G>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1367-11G>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.342-26G>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.474-26G>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.624-26G>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.457-11G>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.118-26G>T
  variant of: http://identifiers.org/hgnc/15514
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

11-85693066-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693066
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693066
    reference: chr 11
allele count: 5
allele frequency: 4.119769952045878e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.342-35C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1517-20C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1496-20C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.118-35C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1367-20C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.163C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1517-20C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1214-20C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.474-35C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.36-35C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.624-35C>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.457-20C>T
  variant of: http://identifiers.org/hgnc/15514
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/11-85693068-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693068
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693068
    reference: chr 11
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.624-37T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.474-37T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1517-22T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.118-37T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1367-22T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1517-22T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.161T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.342-37T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.457-22T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.36-37T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1214-22T>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1496-22T>G
  variant of: http://identifiers.org/hgnc/15514
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9561
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

11-85693070-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693070
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693070
    reference: chr 11
allele count: 53
allele frequency: 4.367028113773442e-4
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1214-24A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1367-24A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1517-24A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.342-39A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.624-39A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1496-24A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.159A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.118-39A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.36-39A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.474-39A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1517-24A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.457-24A>G
  variant of: http://identifiers.org/hgnc/15514
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22971
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

11-85693071-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693071
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693071
    reference: chr 11
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.624-40T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.158T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.457-25T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.36-40T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.474-40T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1214-25T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1517-25T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1496-25T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1517-25T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.118-40T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.342-40T>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1367-25T>A
  variant of: http://identifiers.org/hgnc/15514
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17041
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

11-85693075-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693075
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693075
    reference: chr 11
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1367-29A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1214-29A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.457-29A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1496-29A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.154A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.474-44A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1517-29A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.624-44A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.342-44A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.36-44A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.118-44A>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1517-29A>G
  variant of: http://identifiers.org/hgnc/15514
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ

11-85693082-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693082
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693082
    reference: chr 11
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.118-51C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.624-51C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.147C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1367-36C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1517-36C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.36-51C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.474-51C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.457-36C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1496-36C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1517-36C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1214-36C>G
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.342-51C>G
  variant of: http://identifiers.org/hgnc/15514
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9541
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP

11-85693086-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693086
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693086
    reference: chr 11
allele count: 3
allele frequency: 2.472962279082036e-5
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.457-40G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1496-40G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1367-40G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.118-55G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.36-55G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1214-40G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.624-55G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.143G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1517-40G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.474-55G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1517-40G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.342-55G>A
  variant of: http://identifiers.org/hgnc/15514
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

11-85693094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693094
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693094
    reference: chr 11
allele count: 4
allele frequency: 3.299622193258872e-5
allele num: 121226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1496-48G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1517-48G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1517-48G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.624-63G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.135G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.36-63G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1367-48G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.342-63G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1214-48G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.474-63G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.457-48G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.118-63G>A
  variant of: http://identifiers.org/hgnc/15514
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD

11-85693094-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693094
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693094
    reference: chr 11
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1367-48G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.457-48G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.474-63G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1214-48G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.342-63G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.135G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1517-48G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1496-48G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1517-48G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.624-63G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.36-63G>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.118-63G>C
  variant of: http://identifiers.org/hgnc/15514
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

11-85693096-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693096
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693096
    reference: chr 11
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1517-50G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.342-65G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.133G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.118-65G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1367-50G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1517-50G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.624-65G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1496-50G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.474-65G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.36-65G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1214-50G>A
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.457-50G>A
  variant of: http://identifiers.org/hgnc/15514
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

11-85693097-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85693097
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85693097
    reference: chr 11
allele count: 4
allele frequency: 3.301964668978042e-5
allele num: 121140
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1496-51A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1367-51A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.118-66A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.624-66A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073921
  ensembl transcript: ENST00000534375
  gene symbol: PICALM
  hgvsc: ENST00000534375.1:n.132A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.342-66A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1517-51A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.36-66A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.474-66A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.457-51A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1517-51A>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1214-51A>C
  variant of: http://identifiers.org/hgnc/15514
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9613
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

11-85694884-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85694884
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85694884
    reference: chr 11
allele count: 1
allele frequency: 3.225806451612903e-5
allele num: 31000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.623+25A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.341+25A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.456+25A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.35+25A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1213+25A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.117+25A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.473+25A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1516+25A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1495+25A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1516+25A>T
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1366+25A>T
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

11-85694893-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85694893
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85694893
    reference: chr 11
allele count: 1
allele frequency: 2.490411914130597e-5
allele num: 40154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.117+16T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1516+16T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1366+16T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.456+16T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.473+16T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1213+16T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.35+16T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.341+16T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1516+16T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1495+16T>C
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.623+16T>C
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

11-85694894-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85694894
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85694895
    reference: chr 11
allele count: 119
allele frequency: 2.861952861952862e-3
allele num: 41580
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436852
  ensembl transcript: ENST00000530692
  gene symbol: PICALM
  hgvsc: ENST00000530692.1:c.117+14dupA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000348718
  ensembl transcript: ENST00000356360
  gene symbol: PICALM
  hgvsc: ENST00000356360.5:c.1516+14dupA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000436958
  ensembl transcript: ENST00000532317
  gene symbol: PICALM
  hgvsc: ENST00000532317.1:c.1366+14dupA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435737
  ensembl transcript: ENST00000530542
  gene symbol: PICALM
  hgvsc: ENST00000530542.1:c.623+14dupA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000377015
  ensembl transcript: ENST00000393346
  gene symbol: PICALM
  hgvsc: ENST00000393346.3:c.1516+14dupA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432976
  ensembl transcript: ENST00000526961
  gene symbol: PICALM
  hgvsc: ENST00000526961.1:c.341+14dupA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000432509
  ensembl transcript: ENST00000529016
  gene symbol: PICALM
  hgvsc: ENST00000529016.1:c.456+14dupA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000434884
  ensembl transcript: ENST00000528398
  gene symbol: PICALM
  hgvsc: ENST00000528398.1:c.1213+14dupA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435807
  ensembl transcript: ENST00000529760
  gene symbol: PICALM
  hgvsc: ENST00000529760.1:c.473+14dupA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000433846
  ensembl transcript: ENST00000526033
  gene symbol: PICALM
  hgvsc: ENST00000526033.1:c.1495+14dupA
  variant of: http://identifiers.org/hgnc/15514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073921
  ensembl protein: ENSP00000435311
  ensembl transcript: ENST00000532603
  gene symbol: PICALM
  hgvsc: ENST00000532603.1:c.35+14dupA
  variant of: http://identifiers.org/hgnc/15514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30478
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7100
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11761
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 1.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 1.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 3
reference allele: A

GenotypeDepth
all individuals: 13628
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 489
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3020
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4079
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3044
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1581
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6982
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26415
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7317
bin: 9.75e1
variant carriers: 9

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65442
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.054111033028812e-3
allele num: 8538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 4.996e1

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

FS
type: SiteQuality
SIO_000300: 5.548e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.82e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.956e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.77e-1

QD
type: SiteQuality
SIO_000300: 8.279999999999999e0

DP
type: SiteQuality
SIO_000300: 1.760013e6

GenotypeDepth
all individuals: 500
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1581
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7317
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 489
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6982
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3020
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4079
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26415
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3044
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528070657987225e-5
allele num: 65442
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.956e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.82e-1

MQ
type: SiteQuality
SIO_000300: 4.996e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
SIO_000300: 5.548e0

DP
type: SiteQuality
SIO_000300: 1.760013e6

QD
type: SiteQuality
SIO_000300: 8.279999999999999e0

GenotypeDepth
all individuals: 3513
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4115
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1716
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3044
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7311
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26451
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7024
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3079
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527323823196994e-5
allele num: 65474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.097e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.08e-1

MQ
type: SiteQuality
SIO_000300: 5.886e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

DP
type: SiteQuality
SIO_000300: 1.761979e6

QD
type: SiteQuality
SIO_000300: 1.545e1

GenotypeDepth
all individuals: 174
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7149
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27210
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4179
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1727
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3076
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3115
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7320
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.576938333384188e-5
allele num: 65546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.235e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.45e-1

FS
type: SiteQuality
SIO_000300: 1.495e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

DP
type: SiteQuality
SIO_000300: 1.77068e6

MQ
type: SiteQuality
SIO_000300: 5.94e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

VQSLOD
type: SiteQuality
SIO_000300: 4.66e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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Other
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Latino
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MQ
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QD
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FS
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VQSLOD
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ReadPosRankSum
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DP
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

Other
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European (Non-Finnish)
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Latino
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East Asian
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African
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South Asian
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FS
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InbreedingCoeff
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DP
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MQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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Other
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DP
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ClippingRankSum
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FS
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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Latino
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ClippingRankSum
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FS
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MQRankSum
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DP
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InbreedingCoeff
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QD
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MQ
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8594
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African
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South Asian
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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ClippingRankSum
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FS
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MQRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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African
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Other
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South Asian
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MQ
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ClippingRankSum
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VQSLOD
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FS
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DP
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QD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

Other
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VQSLOD
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BaseQRankSum
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DP
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QD
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InbreedingCoeff
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MQ
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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FS
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MQ
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DP
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Latino
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East Asian
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European (Non-Finnish)
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allele num: 66240
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African
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Other
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MQ
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VQSLOD
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QD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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FS
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DP
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ClippingRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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allele num: 16484
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Other
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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FS
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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African
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East Asian
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ClippingRankSum
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QD
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ReadPosRankSum
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DP
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MQ
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InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66538
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South Asian
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Latino
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East Asian
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African
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European (Finnish)
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QD
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MQRankSum
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MQ
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FS
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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South Asian
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African
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Other
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European (Non-Finnish)
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European (Finnish)
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.840754e6

VQSLOD
type: SiteQuality
SIO_000300: -2.587e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

QD
type: SiteQuality
SIO_000300: 6.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: -1.457e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.658e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

GenotypeDepth
all individuals: 223
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28376
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8071
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variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1836
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.792207792207792e-4
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

DP
type: SiteQuality
SIO_000300: 1.842108e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

QD
type: SiteQuality
SIO_000300: 1.506e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

GenotypeDepth
all individuals: 242
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
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variant carriers: 0

GenotypeQuality
all individuals: 1843
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 5
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3477
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variant carriers: 0

GenotypeQuality
all individuals: 4810
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 1.846127e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.91e-1

FS
type: SiteQuality
SIO_000300: 8.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.55e-1

QD
type: SiteQuality
SIO_000300: 1.365e1

GenotypeDepth
all individuals: 863
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4819
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1846
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 8164
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28712
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3651
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7435
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501501501501501e-5
allele num: 66600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.84715e6

MQRankSum
type: SiteQuality
SIO_000300: -2.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 4.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.45e-1

QD
type: SiteQuality
SIO_000300: 1.349e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

GenotypeDepth
all individuals: 863
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3492
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
all individuals: 28765
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 131
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8205
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1527
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GenotypeQuality
all individuals: 143
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GenotypeQuality
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GenotypeQuality
all individuals: 141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 7438
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1850
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variant carriers: 0

GenotypeQuality
all individuals: 4836
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.687e0

QD
type: SiteQuality
SIO_000300: 1.382e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

FS
type: SiteQuality
SIO_000300: 8.52e-1

DP
type: SiteQuality
SIO_000300: 1.84781e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeDepth
all individuals: 174
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 62
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GenotypeQuality
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GenotypeQuality
all individuals: 1850
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28755
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3677
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.360000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

DP
type: SiteQuality
SIO_000300: 1.848585e6

FS
type: SiteQuality
SIO_000300: 2.703e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.820000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.416e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 4849
bin: 7.75e1
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GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8208
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.849387e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.159e0

FS
type: SiteQuality
SIO_000300: 1.5274e1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

QD
type: SiteQuality
SIO_000300: 1.188e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.63e-1

GenotypeDepth
all individuals: 174
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7450
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 83
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3518
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3701
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GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 4878
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variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.035e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.29e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 8.789999999999999e0

DP
type: SiteQuality
SIO_000300: 1.851121e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.52e-1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

African
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allele num: 10404
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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ClippingRankSum
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MQ
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QD
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InbreedingCoeff
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DP
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 8.996311512279965e-5
allele num: 66694
num of homozygotes: 0

European (Finnish)
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allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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African
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East Asian
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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FS
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QD
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MQRankSum
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ReadPosRankSum
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DP
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SIO_000300: 1.854719e6

MQ
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SIO_000300: 5.978e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Latino
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Other
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East Asian
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ClippingRankSum
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FS
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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DP
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MQ
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ReadPosRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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South Asian
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African
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Latino
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allele num: 11568
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Other
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MQ
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SIO_000300: 5.97e1

BaseQRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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QD
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 1.3557e1

DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

East Asian
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Other
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European (Non-Finnish)
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num of homozygotes: 0

African
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South Asian
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Latino
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ReadPosRankSum
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MQRankSum
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MQ
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ClippingRankSum
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FS
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DP
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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allele num: 10406
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South Asian
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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BaseQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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VQSLOD
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MQ
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MQRankSum
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DP
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
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African
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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QD
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DP
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FS
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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DP
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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African
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FS
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QD
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MQ
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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MQ
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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DP
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VQSLOD
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InbreedingCoeff
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MQ
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VQSLOD
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DP
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African
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MQ
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ReadPosRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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MQ
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QD
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Latino
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East Asian
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Other
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BaseQRankSum
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QD
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MQ
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DP
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11576
num of homozygotes: 0

East Asian
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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VQSLOD
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MQ
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MQRankSum
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FS
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InbreedingCoeff
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DP
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ReadPosRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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Latino
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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VQSLOD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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MQ
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ReadPosRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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Other
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East Asian
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South Asian
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African
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MQ
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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African
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South Asian
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East Asian
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European (Finnish)
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VQSLOD
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MQRankSum
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FS
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InbreedingCoeff
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MQ
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ReadPosRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

DP
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SIO_000300: 1.860924e6

FS
type: SiteQuality
SIO_000300: 2.756e0

BaseQRankSum
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QD
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ClippingRankSum
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SIO_000300: -1.64e-1

ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
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SIO_000300: 6.32e-1

MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.505e0

QD
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InbreedingCoeff
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SIO_000300: 1.0e-4

ClippingRankSum
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MQ
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
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SIO_000300: 1.19e0

BaseQRankSum
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SIO_000300: 2.42e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.495324862143371e-5
allele num: 66736
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 7.28e-1

BaseQRankSum
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FS
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SIO_000300: 5.23e-1

MQRankSum
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VQSLOD
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MQ
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SIO_000300: 5.98e1

QD
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ClippingRankSum
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SIO_000300: -8.44e-1

InbreedingCoeff
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SIO_000300: -2.0e-4

DP
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SIO_000300: 1.861338e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.545e0

QD
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SIO_000300: 1.067e1

MQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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SIO_000300: 9.07e-1

DP
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SIO_000300: 1.861155e6

ReadPosRankSum
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SIO_000300: 1.1e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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MQRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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FS
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QD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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European (Finnish)
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East Asian
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African
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66738
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VQSLOD
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DP
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QD
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BaseQRankSum
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FS
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MQ
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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East Asian
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African
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European (Finnish)
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Other
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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FS
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QD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

East Asian
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.88e0

DP
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SIO_000300: 1.860103e6

VQSLOD
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SIO_000300: 2.4e-1

BaseQRankSum
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MQ
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.176e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.817300702689605e-4
allele num: 16508
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: 3.12e-1

VQSLOD
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FS
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QD
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MQ
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ReadPosRankSum
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SIO_000300: 1.03e0

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -2.126e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

DP
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SIO_000300: 1.858858e6

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
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allele count: 0
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MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

BaseQRankSum
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QD
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SIO_000300: 1.733e1

InbreedingCoeff
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SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 9.345000000000001e0

MQ
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SIO_000300: 5.974e1

ClippingRankSum
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SIO_000300: -1.426e0

VQSLOD
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SIO_000300: -1.537e0

DP
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SIO_000300: 1.858342e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 53

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.498666187093487e-4
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 40
allele frequency: 2.422774076317383e-3
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

BaseQRankSum
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SIO_000300: 3.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

ReadPosRankSum
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FS
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SIO_000300: 2.236e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.859557e6

QD
type: SiteQuality
SIO_000300: 1.424e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

QD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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FS
type: SiteQuality
SIO_000300: 3.158e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.33e-1

DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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ReadPosRankSum
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BaseQRankSum
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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East Asian
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QD
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MQRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQ
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
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num of homozygotes: 0

South Asian
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allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.850884e6

QD
type: SiteQuality
SIO_000300: 1.288e1

FS
type: SiteQuality
SIO_000300: 3.825e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.015e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 510
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 217
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.725734292939116e-5
allele num: 10282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

DP
type: SiteQuality
SIO_000300: 1.84973e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-1

FS
type: SiteQuality
SIO_000300: 1.954e0

QD
type: SiteQuality
SIO_000300: 1.357e1

GenotypeDepth
all individuals: 308
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26559
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3557
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.725734292939116e-5
allele num: 10282
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.954e0

QD
type: SiteQuality
SIO_000300: 1.357e1

DP
type: SiteQuality
SIO_000300: 1.84973e6

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

GenotypeDepth
all individuals: 9610
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24813
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.196e1

MQRankSum
type: SiteQuality
SIO_000300: -1.895e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 1.85335e6

VQSLOD
type: SiteQuality
SIO_000300: -1.531e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.529e0

FS
type: SiteQuality
SIO_000300: 2.147e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.288e0

GenotypeDepth
all individuals: 863
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24962
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4944
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.639294827186268e-4
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 2.108e0

DP
type: SiteQuality
SIO_000300: 1.853604e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-1

QD
type: SiteQuality
SIO_000300: 1.164e1

BaseQRankSum
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SIO_000300: 3.78e0

VQSLOD
type: SiteQuality
SIO_000300: 7.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.23e-2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.142334932602239e-4
allele num: 8754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2106
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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DP
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SIO_000300: 5.85227e5

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.64e-2

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 211
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variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2672
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.017501508750754e-4
allele num: 3314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 19374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1400
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.274e0

QD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 92

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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bin: 7.5e0
variant carriers: 4