12-57106286-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106286
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106286
    reference: chr 12
allele count: 39
allele frequency: 3.221383377661771e-4
allele num: 121066
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.*36A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.*36A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.*36A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.*36A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.*36A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.*36A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.*36A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.582A>C
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12050
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6610
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12261
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

12-57106313-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106313
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106313
    reference: chr 12
allele count: 1
allele frequency: 8.25559316436886e-6
allele num: 121130
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.*9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.555A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.*9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.*9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.*9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.*9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.*9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.*9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.*9A>G
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9103
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5065
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

12-57106339-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106339
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106339
    reference: chr 12
allele count: 1
allele frequency: 8.256683785524381e-6
allele num: 121114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.397-3C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.634-3C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.634-3C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2764-3C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.634-3C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*270-3C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.628-3C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.634-3C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6223-3C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.529C>T
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2317
  bin: 8.75e1
  variant carriers: 0
hgvs: c.2764-3C>T
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

12-57106347-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106347
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106347
    reference: chr 12
allele count: 1
allele frequency: 8.259411599517651e-6
allele num: 121074
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.521C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.634-11C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.628-11C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.634-11C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.634-11C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6223-11C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*270-11C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.397-11C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.634-11C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2764-11C>G
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12957
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22012
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

12-57106347-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106347
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106346
    reference: chr 12
allele count: 1
allele frequency: 8.259411599517651e-6
allele num: 121074
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6223-12delT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.634-12delT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.397-12delT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.520delT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*270-12delT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.634-12delT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.634-12delT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2764-12delT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.628-12delT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.634-12delT
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: GA
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

12-57106349-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106349
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106349
    reference: chr 12
allele count: 1
allele frequency: 8.260366760284156e-6
allele num: 121060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.634-13T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6223-13T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2764-13T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.519T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*270-13T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.634-13T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.628-13T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.634-13T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.397-13T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.634-13T>C
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3769
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

12-57106351-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106351
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106351
    reference: chr 12
allele count: 1
allele frequency: 8.260366760284156e-6
allele num: 121060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.634-15T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.634-15T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6223-15T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.397-15T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.634-15T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.517T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.634-15T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*270-15T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.628-15T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2764-15T>C
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6899
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5036
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS

12-57106361-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106361
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106361
    reference: chr 12
allele count: 2
allele frequency: 1.653138483410755e-5
allele num: 120982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.634-25G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.634-25G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6223-25G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2764-25G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.628-25G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.507G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.634-25G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*270-25G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.634-25G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.397-25G>A
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

12-57106363-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106363
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106363
    reference: chr 12
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.628-27C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.634-27C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6223-27C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.397-27C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.634-27C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.634-27C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2764-27C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.505C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.634-27C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*270-27C>A
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4525
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

12-57106368-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106368
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106368
    reference: chr 12
allele count: 72
allele frequency: 5.953168408519646e-4
allele num: 120944
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.628-32A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.634-32A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.634-32A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.634-32A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.397-32A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2764-32A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.634-32A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*270-32A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.500A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6223-32A>C
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6569
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 11998
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 11094
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3024
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD

12-57106370-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106370
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106370
    reference: chr 12
allele count: 2
allele frequency: 1.653931394925738e-5
allele num: 120924
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.634-34A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6223-34A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.634-34A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.634-34A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.628-34A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.634-34A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.397-34A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*270-34A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2764-34A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.498A>G
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8936
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10553
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-57106374-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106374
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106375
    reference: chr 12
allele count: 2
allele frequency: 1.654533421575116e-5
allele num: 120880
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.634-39dupT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.493dupT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.628-39dupT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6223-39dupT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.634-39dupT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.634-39dupT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2764-39dupT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.634-39dupT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.397-39dupT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*270-39dupT
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8906
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-57106376-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106376
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106376
    reference: chr 12
allele count: 1
allele frequency: 8.273899157717065e-6
allele num: 120862
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.634-40T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.628-40T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2764-40T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.634-40T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6223-40T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.397-40T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.634-40T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.492T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*270-40T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.634-40T>C
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11336
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

12-57106382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106382
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106382
    reference: chr 12
allele count: 102
allele frequency: 8.447764655215253e-4
allele num: 120742
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2764-46C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.634-46C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.634-46C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6223-46C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*270-46C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.397-46C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.634-46C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.486C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.628-46C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.634-46C>T
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8744
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9397
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10491
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-57106384-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106384
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106384
    reference: chr 12
allele count: 37
allele frequency: 3.065400739010124e-4
allele num: 120702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*270-48C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.634-48C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2764-48C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.634-48C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6223-48C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.484C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.634-48C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.634-48C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.397-48C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.628-48C>A
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9341
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10379
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8735
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

12-57106519-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106519
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106519
    reference: chr 12
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.509G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.627+51G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*269+51G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.633+51G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.633+51G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.633+51G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.349G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.396+51G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.633+51G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2763+51G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6222+51G>A
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

12-57106525-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106525
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106525
    reference: chr 12
allele count: 18
allele frequency: 1.482872818941229e-4
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.396+45A>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*269+45A>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2763+45A>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6222+45A>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.633+45A>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.343A>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.503A>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.633+45A>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.627+45A>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.633+45A>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.633+45A>T
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9661
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

12-57106531-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106531
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106531
    reference: chr 12
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.633+39C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.627+39C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.633+39C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6222+39C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2763+39C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.396+39C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.633+39C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.497C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.633+39C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*269+39C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.337C>G
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-57106534-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106534
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106534
    reference: chr 12
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.334G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.494G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*269+36G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6222+36G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.633+36G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2763+36G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.633+36G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.627+36G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.633+36G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.633+36G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.396+36G>T
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4994
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

12-57106540-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106540
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106540
    reference: chr 12
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.627+30C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.396+30C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.488C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.328C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.633+30C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6222+30C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.633+30C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.633+30C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*269+30C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.633+30C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2763+30C>T
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

12-57106558-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106558
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106558
    reference: chr 12
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*269+12A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.310A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.633+12A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.627+12A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.470A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.633+12A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.633+12A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.633+12A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6222+12A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.396+12A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2763+12A>C
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

12-57106567-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106567
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106567
    reference: chr 12
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.633+3A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.627+3A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.301A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.396+3A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.633+3A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.633+3A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2763+3A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.633+3A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6222+3A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*269+3A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.461A>G
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2763+3A>G
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

12-57106576-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106576
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106576
    reference: chr 12
allele count: 4
allele frequency: 3.294730079238259e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.627G>A
  hgvsp: ENST00000552540.1:c.627G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.292G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.390G>A
  hgvsp: ENST00000548563.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.452G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.621G>A
  hgvsp: ENST00000550920.1:c.621G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.627G>A
  hgvsp: ENST00000393891.4:c.627G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.627G>A
  hgvsp: ENST00000356769.3:c.627G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.627G>A
  hgvsp: ENST00000546392.1:c.627G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2757G>A
  hgvsp: ENST00000550952.1:c.2757G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*263G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6216G>A
  hgvsp: ENST00000454682.1:c.6216G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala919Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-57106588-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106588
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106588
    reference: chr 12
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.609T>C
  hgvsp: ENST00000550920.1:c.609T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.378T>C
  hgvsp: ENST00000548563.1:c.378T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.615T>C
  hgvsp: ENST00000393891.4:c.615T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.280T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.615T>C
  hgvsp: ENST00000356769.3:c.615T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.615T>C
  hgvsp: ENST00000546392.1:c.615T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6204T>C
  hgvsp: ENST00000454682.1:c.6204T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.615T>C
  hgvsp: ENST00000552540.1:c.615T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*251T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.440T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2745T>C
  hgvsp: ENST00000550952.1:c.2745T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp915Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

12-57106611-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106611
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106611
    reference: chr 12
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.592G>A
  hgvsp: ENSP00000446801.1:p.Ala198Thr
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.592G>A
  hgvsp: ENSP00000447133.1:p.Ala198Thr
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6181G>A
  hgvsp: ENSP00000403817.1:p.Ala2061Thr
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.592G>A
  hgvsp: ENSP00000349212.3:p.Ala198Thr
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.257G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.355G>A
  hgvsp: ENSP00000447705.1:p.Ala119Thr
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.586G>A
  hgvsp: ENSP00000448039.1:p.Ala196Thr
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.592G>A
  hgvsp: ENSP00000377469.4:p.Ala198Thr
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2722G>A
  hgvsp: ENSP00000448035.1:p.Ala908Thr
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.417G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.592G>A
  hgvsp: ENSP00000447821.1:p.Ala198Thr
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*228G>A
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala908Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

12-57106630-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106630
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106630
    reference: chr 12
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2703G>A
  hgvsp: ENST00000550952.1:c.2703G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*209G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.573G>A
  hgvsp: ENST00000546392.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.573G>A
  hgvsp: ENST00000356769.3:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.573G>A
  hgvsp: ENST00000393891.4:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.573G>A
  hgvsp: ENST00000552540.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.398G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.238G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.336G>A
  hgvsp: ENST00000548563.1:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.567G>A
  hgvsp: ENST00000550920.1:c.567G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.573G>A
  hgvsp: ENST00000549259.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6162G>A
  hgvsp: ENST00000454682.1:c.6162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4994
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser901Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

12-57106656-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106656
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106656
    reference: chr 12
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6136T>C
  hgvsp: ENST00000454682.1:c.6136T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2677T>C
  hgvsp: ENST00000550952.1:c.2677T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.547T>C
  hgvsp: ENST00000549259.1:c.547T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.372T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.547T>C
  hgvsp: ENST00000552540.1:c.547T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.310T>C
  hgvsp: ENST00000548563.1:c.310T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.547T>C
  hgvsp: ENST00000393891.4:c.547T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.547T>C
  hgvsp: ENST00000356769.3:c.547T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.541T>C
  hgvsp: ENST00000550920.1:c.541T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*183T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.212T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.547T>C
  hgvsp: ENST00000546392.1:c.547T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu893Leu
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

12-57106660-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106660
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106660
    reference: chr 12
allele count: 93879
allele frequency: 7.733031301482702e-1
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2673T>A
  hgvsp: ENST00000550952.1:c.2673T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.543T>A
  hgvsp: ENST00000356769.3:c.543T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.543T>A
  hgvsp: ENST00000546392.1:c.543T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*179T>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.208T>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.537T>A
  hgvsp: ENST00000550920.1:c.537T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.368T>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.543T>A
  hgvsp: ENST00000393891.4:c.543T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.306T>A
  hgvsp: ENST00000548563.1:c.306T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.543T>A
  hgvsp: ENST00000552540.1:c.543T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6132T>A
  hgvsp: ENST00000454682.1:c.6132T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.543T>A
  hgvsp: ENST00000549259.1:c.543T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 8.75e1
  variant carriers: 2367
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 6.25e1
  variant carriers: 585
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 7.75e1
  variant carriers: 1549
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 6.75e1
  variant carriers: 871
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.25e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 9.25e1
  variant carriers: 2651
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 8.25e1
  variant carriers: 1951
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 7.25e1
  variant carriers: 1195
genotype quality: GenotypeQuality
hgvs: p.Ile891Ile
num of homozygotes: 36490
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

12-57106663-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106663
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106663
    reference: chr 12
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*176C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.540C>T
  hgvsp: ENST00000393891.4:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.540C>T
  hgvsp: ENST00000552540.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.534C>T
  hgvsp: ENST00000550920.1:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.205C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.540C>T
  hgvsp: ENST00000546392.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.540C>T
  hgvsp: ENST00000549259.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6129C>T
  hgvsp: ENST00000454682.1:c.6129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.540C>T
  hgvsp: ENST00000356769.3:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2670C>T
  hgvsp: ENST00000550952.1:c.2670C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.303C>T
  hgvsp: ENST00000548563.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.365C>T
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10471
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp890Asp
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

12-57106677-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106677
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106677
    reference: chr 12
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2656G>A
  hgvsp: ENSP00000448035.1:p.Val886Ile
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.526G>A
  hgvsp: ENSP00000447821.1:p.Val176Ile
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.191G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.351G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.526G>A
  hgvsp: ENSP00000349212.3:p.Val176Ile
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.289G>A
  hgvsp: ENSP00000447705.1:p.Val97Ile
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.520G>A
  hgvsp: ENSP00000448039.1:p.Val174Ile
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6115G>A
  hgvsp: ENSP00000403817.1:p.Val2039Ile
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.526G>A
  hgvsp: ENSP00000377469.4:p.Val176Ile
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*162G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.526G>A
  hgvsp: ENSP00000446801.1:p.Val176Ile
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.526G>A
  hgvsp: ENSP00000447133.1:p.Val176Ile
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10471
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val886Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

12-57106689-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106689
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106689
    reference: chr 12
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.514G>A
  hgvsp: ENSP00000377469.4:p.Asp172Asn
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.508G>A
  hgvsp: ENSP00000448039.1:p.Asp170Asn
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.514G>A
  hgvsp: ENSP00000349212.3:p.Asp172Asn
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.277G>A
  hgvsp: ENSP00000447705.1:p.Asp93Asn
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.514G>A
  hgvsp: ENSP00000446801.1:p.Asp172Asn
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.514G>A
  hgvsp: ENSP00000447133.1:p.Asp172Asn
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.179G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6103G>A
  hgvsp: ENSP00000403817.1:p.Asp2035Asn
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2644G>A
  hgvsp: ENSP00000448035.1:p.Asp882Asn
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.514G>A
  hgvsp: ENSP00000447821.1:p.Asp172Asn
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.339G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*150G>A
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp882Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

12-57106690-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106690
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106690
    reference: chr 12
allele count: 4
allele frequency: 3.29489291598023e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.338C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.513C>T
  hgvsp: ENST00000546392.1:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.178C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6102C>T
  hgvsp: ENST00000454682.1:c.6102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.513C>T
  hgvsp: ENST00000549259.1:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.513C>T
  hgvsp: ENST00000393891.4:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.276C>T
  hgvsp: ENST00000548563.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.513C>T
  hgvsp: ENST00000356769.3:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.513C>T
  hgvsp: ENST00000552540.1:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*149C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2643C>T
  hgvsp: ENST00000550952.1:c.2643C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.507C>T
  hgvsp: ENST00000550920.1:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2643C>T
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-57106698-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106698
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106698
    reference: chr 12
allele count: 14
allele frequency: 1.153326523214815e-4
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.176-6T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.511-6T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.274-6T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*147-6T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.511-6T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.505-6T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.511-6T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2641-6T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6100-6T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.511-6T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.336-6T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.511-6T>G
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10469
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2641-6T>G
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

12-57106699-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106699
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106699
    reference: chr 12
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2641-7C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.505-7C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.176-7C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.511-7C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.511-7C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.511-7C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.511-7C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.511-7C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.274-7C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*147-7C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6100-7C>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.336-7C>A
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2641-7C>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

12-57106701-TGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106701
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106699
    reference: chr 12
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.336-11_336-10delTC
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.511-11_511-10delTC
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2641-11_2641-10delTC
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.511-11_511-10delTC
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.505-11_505-10delTC
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.511-11_511-10delTC
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.511-11_511-10delTC
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*147-11_*147-10delTC
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.176-11_176-10delTC
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.274-11_274-10delTC
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.511-11_511-10delTC
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6100-11_6100-10delTC
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TGA
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

12-57106717-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106717
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106717
    reference: chr 12
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.176-25C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.336-25C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6100-25C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*147-25C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.511-25C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.511-25C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.505-25C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.511-25C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.274-25C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.511-25C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2641-25C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.511-25C>T
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/12-57106729-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106729
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106729
    reference: chr 12
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*147-37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2641-37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.511-37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.511-37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.505-37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.511-37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.511-37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.511-37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.336-37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.274-37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6100-37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.176-37G>T
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

12-57106729-CAAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106729
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106726
    reference: chr 12
allele count: 3
allele frequency: 2.472717681579902e-5
allele num: 121324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.511-40_511-38delCTT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2641-40_2641-38delCTT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6100-40_6100-38delCTT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.511-40_511-38delCTT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.336-40_336-38delCTT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*147-40_*147-38delCTT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.511-40_511-38delCTT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.505-40_505-38delCTT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.176-40_176-38delCTT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.274-40_274-38delCTT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.511-40_511-38delCTT
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.511-40_511-38delCTT
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: CAAG
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

12-57106732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106732
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106732
    reference: chr 12
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2641-40C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.511-40C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6100-40C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.505-40C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.511-40C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.176-40C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.511-40C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.511-40C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.511-40C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.274-40C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.336-40C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*147-40C>T
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-57106732-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106732
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106732
    reference: chr 12
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.336-40C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.511-40C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.511-40C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.511-40C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*147-40C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.176-40C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.511-40C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6100-40C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2641-40C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.505-40C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.274-40C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.511-40C>G
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

12-57106735-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106735
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106735
    reference: chr 12
allele count: 21
allele frequency: 1.731073595357425e-4
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2641-43G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.505-43G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.511-43G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.511-43G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6100-43G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*147-43G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.511-43G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.511-43G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.511-43G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.176-43G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.274-43G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.336-43G>A
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5100
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

12-57106740-TCAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106740
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106737
    reference: chr 12
allele count: 36
allele frequency: 2.968190887653975e-4
allele num: 121286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.511-51_511-49delCTG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.511-51_511-49delCTG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.511-51_511-49delCTG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*147-51_*147-49delCTG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.336-51_336-49delCTG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.511-51_511-49delCTG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2641-51_2641-49delCTG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.274-51_274-49delCTG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.511-51_511-49delCTG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6100-51_6100-49delCTG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.505-51_505-49delCTG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.176-51_176-49delCTG
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5101
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10460
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: TCAG
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

12-57106741-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106741
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106741
    reference: chr 12
allele count: 3
allele frequency: 2.475165836111019e-5
allele num: 121204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.511-49G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.336-49G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.511-49G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6100-49G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.511-49G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*147-49G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.511-49G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.274-49G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2641-49G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.511-49G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.176-49G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.505-49G>A
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10454
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

12-57106804-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106804
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106804
    reference: chr 12
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.510+42G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.335+42G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2640+42G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.510+42G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.510+42G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.504+42G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6099+42G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.510+42G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.175+42G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*146+42G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.273+42G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.510+42G>A
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/12-57106808-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106808
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106807
    reference: chr 12
allele count: 17
allele frequency: 1.400975738396624e-4
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.504+37delG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2640+37delG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.510+37delG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*146+37delG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.510+37delG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.510+37delG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6099+37delG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.510+37delG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.510+37delG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.273+37delG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.335+37delG
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.175+37delG
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6372
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: AC
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-57106809-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106809
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106809
    reference: chr 12
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.510+37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.510+37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.510+37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.504+37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6099+37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.335+37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.175+37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.510+37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*146+37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.510+37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2640+37G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.273+37G>T
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD

12-57106809-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106809
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106809
    reference: chr 12
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.273+37G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.510+37G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.504+37G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.510+37G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.510+37G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.335+37G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.175+37G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*146+37G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6099+37G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.510+37G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2640+37G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.510+37G>A
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

12-57106810-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106810
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106810
    reference: chr 12
allele count: 79306
allele frequency: 6.539514479846955e-1
allele num: 121272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.510+36C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.504+36C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.510+36C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.175+36C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2640+36C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.510+36C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.510+36C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.335+36C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*146+36C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.273+36C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6099+36C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.510+36C>T
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 7.25e1
  variant carriers: 4492
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.25e1
  variant carriers: 1457
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 2.75e1
  variant carriers: 882
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 7.75e1
  variant carriers: 3655
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 6.25e1
  variant carriers: 4923
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 2.25e1
  variant carriers: 443
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 4.25e1
  variant carriers: 2753
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 9.25e1
  variant carriers: 1724
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 3.75e1
  variant carriers: 2055
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 5.75e1
  variant carriers: 4708
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 4.75e1
  variant carriers: 3476
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 8.25e1
  variant carriers: 2927
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 8.75e1
  variant carriers: 2262
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 9.75e1
  variant carriers: 7818
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 5.25e1
  variant carriers: 4092
genotype quality: GenotypeQuality
num of homozygotes: 26540
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-57106812-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106812
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106812
    reference: chr 12
allele count: 14
allele frequency: 1.153725709953357e-4
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6099+34G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.510+34G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.175+34G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.510+34G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.335+34G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.504+34G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.510+34G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.510+34G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2640+34G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.273+34G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*146+34G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.510+34G>A
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10333
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

12-57106813-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106813
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106813
    reference: chr 12
allele count: 32
allele frequency: 2.636783124588003e-4
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.510+33C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2640+33C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.504+33C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.335+33C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6099+33C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.510+33C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.273+33C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.510+33C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.175+33C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.510+33C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.510+33C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*146+33C>T
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

12-57106827-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106827
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106827
    reference: chr 12
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.510+19C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.510+19C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.504+19C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2640+19C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6099+19C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.510+19C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.175+19C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*146+19C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.510+19C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.335+19C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.510+19C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.273+19C>T
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

12-57106827-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106827
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106827
    reference: chr 12
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.175+19C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*146+19C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.510+19C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.510+19C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.510+19C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.273+19C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.510+19C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.510+19C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.335+19C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2640+19C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.504+19C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6099+19C>G
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

12-57106833-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106833
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106833
    reference: chr 12
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6099+13A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.510+13A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.273+13A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*146+13A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.175+13A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.510+13A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.510+13A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.510+13A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2640+13A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.504+13A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.335+13A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.510+13A>G
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-57106852-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106852
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106852
    reference: chr 12
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.504G>T
  hgvsp: ENSP00000447133.1:p.Glu168Asp
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.504G>T
  hgvsp: ENSP00000377469.4:p.Glu168Asp
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.329G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.169G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6093G>T
  hgvsp: ENSP00000403817.1:p.Glu2031Asp
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.504G>T
  hgvsp: ENSP00000446801.1:p.Glu168Asp
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.504G>T
  hgvsp: ENSP00000349212.3:p.Glu168Asp
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.504G>T
  hgvsp: ENSP00000447821.1:p.Glu168Asp
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.267G>T
  hgvsp: ENSP00000447705.1:p.Glu89Asp
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.498G>T
  hgvsp: ENSP00000448039.1:p.Glu166Asp
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000551775
  gene symbol: NACA
  hgvsc: ENST00000551775.1:n.445G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*140G>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2634G>T
  hgvsp: ENSP00000448035.1:p.Glu878Asp
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu878Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

12-57106855-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106855
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106855
    reference: chr 12
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.501A>G
  hgvsp: ENST00000552540.1:c.501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6090A>G
  hgvsp: ENST00000454682.1:c.6090A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2631A>G
  hgvsp: ENST00000550952.1:c.2631A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.326A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.501A>G
  hgvsp: ENST00000356769.3:c.501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000551775
  gene symbol: NACA
  hgvsc: ENST00000551775.1:n.442A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*137A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.495A>G
  hgvsp: ENST00000550920.1:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.166A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.264A>G
  hgvsp: ENST00000548563.1:c.264A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.501A>G
  hgvsp: ENST00000393891.4:c.501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.501A>G
  hgvsp: ENST00000546392.1:c.501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.501A>G
  hgvsp: ENST00000549259.1:c.501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu877Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

12-57106865-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106865
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106865
    reference: chr 12
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.491A>C
  hgvsp: ENSP00000377469.4:p.Glu164Ala
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.254A>C
  hgvsp: ENSP00000447705.1:p.Glu85Ala
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.491A>C
  hgvsp: ENSP00000447821.1:p.Glu164Ala
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6080A>C
  hgvsp: ENSP00000403817.1:p.Glu2027Ala
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.316A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2621A>C
  hgvsp: ENSP00000448035.1:p.Glu874Ala
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000551775
  gene symbol: NACA
  hgvsc: ENST00000551775.1:n.432A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.491A>C
  hgvsp: ENSP00000349212.3:p.Glu164Ala
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.491A>C
  hgvsp: ENSP00000447133.1:p.Glu164Ala
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.491A>C
  hgvsp: ENSP00000446801.1:p.Glu164Ala
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.156A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*127A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.485A>C
  hgvsp: ENSP00000448039.1:p.Glu162Ala
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu874Ala
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

12-57106870-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106870
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106870
    reference: chr 12
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.249A>C
  hgvsp: ENST00000548563.1:c.249A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6075A>C
  hgvsp: ENST00000454682.1:c.6075A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.486A>C
  hgvsp: ENST00000393891.4:c.486A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.311A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.151A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*122A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000551775
  gene symbol: NACA
  hgvsc: ENST00000551775.1:n.427A>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.486A>C
  hgvsp: ENST00000546392.1:c.486A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.480A>C
  hgvsp: ENST00000550920.1:c.480A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.486A>C
  hgvsp: ENST00000552540.1:c.486A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2616A>C
  hgvsp: ENST00000550952.1:c.2616A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.486A>C
  hgvsp: ENST00000356769.3:c.486A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.486A>C
  hgvsp: ENST00000549259.1:c.486A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30874
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val872Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

12-57106880-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106880
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106880
    reference: chr 12
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.239C>T
  hgvsp: ENSP00000447705.1:p.Thr80Ile
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2606C>T
  hgvsp: ENSP00000448035.1:p.Thr869Ile
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.141C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.470C>T
  hgvsp: ENSP00000448039.1:p.Thr157Ile
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.476C>T
  hgvsp: ENSP00000349212.3:p.Thr159Ile
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.476C>T
  hgvsp: ENSP00000446801.1:p.Thr159Ile
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*112C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.476C>T
  hgvsp: ENSP00000447821.1:p.Thr159Ile
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.476C>T
  hgvsp: ENSP00000447133.1:p.Thr159Ile
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.476C>T
  hgvsp: ENSP00000377469.4:p.Thr159Ile
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000551775
  gene symbol: NACA
  hgvsc: ENST00000551775.1:n.417C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.301C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6065C>T
  hgvsp: ENSP00000403817.1:p.Thr2022Ile
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10328
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr869Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

12-57106930-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106930
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106930
    reference: chr 12
allele count: 1
allele frequency: 8.284592315212168e-6
allele num: 120706
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000450383
  ensembl transcript: ENST00000552055
  gene symbol: NACA
  hgvsc: ENST00000552055.1:c.414A>G
  hgvsp: ENST00000552055.1:c.414A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.426A>G
  hgvsp: ENST00000393891.4:c.426A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.426A>G
  hgvsp: ENST00000546392.1:c.426A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2556A>G
  hgvsp: ENST00000550952.1:c.2556A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.426A>G
  hgvsp: ENST00000549259.1:c.426A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*62A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.426A>G
  hgvsp: ENST00000552540.1:c.426A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.6015A>G
  hgvsp: ENST00000454682.1:c.6015A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.420A>G
  hgvsp: ENST00000550920.1:c.420A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.426A>G
  hgvsp: ENST00000356769.3:c.426A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446933
  ensembl transcript: ENST00000546862
  gene symbol: NACA
  hgvsc: ENST00000546862.1:c.189A>G
  hgvsp: ENST00000546862.1:c.189A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.189A>G
  hgvsp: ENST00000548563.1:c.189A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000551775
  gene symbol: NACA
  hgvsc: ENST00000551775.1:n.367A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.91A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.251A>G
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys852Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

12-57106972-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106972
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106972
    reference: chr 12
allele count: 2
allele frequency: 1.74864916851732e-5
allele num: 114374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000450383
  ensembl transcript: ENST00000552055
  gene symbol: NACA
  hgvsc: ENST00000552055.1:c.372C>T
  hgvsp: ENST00000552055.1:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.378C>T
  hgvsp: ENST00000550920.1:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000551775
  gene symbol: NACA
  hgvsc: ENST00000551775.1:n.325C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446933
  ensembl transcript: ENST00000546862
  gene symbol: NACA
  hgvsc: ENST00000546862.1:c.147C>T
  hgvsp: ENST00000546862.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.384C>T
  hgvsp: ENST00000546392.1:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.384C>T
  hgvsp: ENST00000549259.1:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.5973C>T
  hgvsp: ENST00000454682.1:c.5973C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.49C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.384C>T
  hgvsp: ENST00000356769.3:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2514C>T
  hgvsp: ENST00000550952.1:c.2514C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.147C>T
  hgvsp: ENST00000548563.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.209C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.384C>T
  hgvsp: ENST00000393891.4:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*20C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.384C>T
  hgvsp: ENST00000552540.1:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2514C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

12-57106981-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106981
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106981
    reference: chr 12
allele count: 1
allele frequency: 8.928730870194111e-6
allele num: 111998
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.200C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.5971-7C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.376-7C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2512-7C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000450383
  ensembl transcript: ENST00000552055
  gene symbol: NACA
  hgvsc: ENST00000552055.1:c.370-7C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*18-7C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446933
  ensembl transcript: ENST00000546862
  gene symbol: NACA
  hgvsc: ENST00000546862.1:c.145-7C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.382-7C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.382-7C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.145-7C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.382-7C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.47-7C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000551775
  gene symbol: NACA
  hgvsc: ENST00000551775.1:n.323-7C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.382-7C>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.382-7C>G
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2512-7C>G
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

12-57106981-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106981
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106981
    reference: chr 12
allele count: 1
allele frequency: 8.928730870194111e-6
allele num: 111998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.5971-7C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.382-7C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000450383
  ensembl transcript: ENST00000552055
  gene symbol: NACA
  hgvsc: ENST00000552055.1:c.370-7C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2512-7C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.47-7C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.382-7C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446933
  ensembl transcript: ENST00000546862
  gene symbol: NACA
  hgvsc: ENST00000546862.1:c.145-7C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.200C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.376-7C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*18-7C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.382-7C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.145-7C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.382-7C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000551775
  gene symbol: NACA
  hgvsc: ENST00000551775.1:n.323-7C>T
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.382-7C>T
  variant of: http://identifiers.org/hgnc/7629
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2512-7C>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

12-57106983-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106983
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106983
    reference: chr 12
allele count: 2
allele frequency: 1.794752144728813e-5
allele num: 111436
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.382-9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.47-9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*18-9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.382-9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.382-9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.382-9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.382-9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446933
  ensembl transcript: ENST00000546862
  gene symbol: NACA
  hgvsc: ENST00000546862.1:c.145-9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000450383
  ensembl transcript: ENST00000552055
  gene symbol: NACA
  hgvsc: ENST00000552055.1:c.370-9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.376-9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.145-9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000551775
  gene symbol: NACA
  hgvsc: ENST00000551775.1:n.323-9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2512-9A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.198A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.5971-9A>G
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

12-57106990-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106990
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106990
    reference: chr 12
allele count: 1
allele frequency: 9.136091214734688e-6
allele num: 109456
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.382-16A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2512-16A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.382-16A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*18-16A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.382-16A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.145-16A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.382-16A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.191A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.47-16A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.382-16A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.5971-16A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000551775
  gene symbol: NACA
  hgvsc: ENST00000551775.1:n.323-16A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.376-16A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000450383
  ensembl transcript: ENST00000552055
  gene symbol: NACA
  hgvsc: ENST00000552055.1:c.370-16A>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446933
  ensembl transcript: ENST00000546862
  gene symbol: NACA
  hgvsc: ENST00000546862.1:c.145-16A>G
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10159
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

12-57106992-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106992
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106992
    reference: chr 12
allele count: 1
allele frequency: 9.17380694640662e-6
allele num: 109006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.189G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.145-18G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.382-18G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.382-18G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000450383
  ensembl transcript: ENST00000552055
  gene symbol: NACA
  hgvsc: ENST00000552055.1:c.370-18G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.382-18G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446933
  ensembl transcript: ENST00000546862
  gene symbol: NACA
  hgvsc: ENST00000546862.1:c.145-18G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.376-18G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2512-18G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.5971-18G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000551775
  gene symbol: NACA
  hgvsc: ENST00000551775.1:n.323-18G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*18-18G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.382-18G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.382-18G>A
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.47-18G>A
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/12-57106993-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106993
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106993
    reference: chr 12
allele count: 1
allele frequency: 9.189318336365809e-6
allele num: 108822
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.47-19T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.382-19T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2512-19T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.5971-19T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.376-19T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000551775
  gene symbol: NACA
  hgvsc: ENST00000551775.1:n.323-19T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.382-19T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*18-19T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.145-19T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.382-19T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.188T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.382-19T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446933
  ensembl transcript: ENST00000546862
  gene symbol: NACA
  hgvsc: ENST00000546862.1:c.145-19T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.382-19T>G
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000450383
  ensembl transcript: ENST00000552055
  gene symbol: NACA
  hgvsc: ENST00000552055.1:c.370-19T>G
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5772
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

12-57106993-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57106993
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 57106993
    reference: chr 12
allele count: 13
allele frequency: 1.194611383727555e-4
allele num: 108822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447133
  ensembl transcript: ENST00000549259
  gene symbol: NACA
  hgvsc: ENST00000549259.1:c.382-19T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000377469
  ensembl transcript: ENST00000393891
  gene symbol: NACA
  hgvsc: ENST00000393891.4:c.382-19T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000546410
  gene symbol: NACA
  hgvsc: ENST00000546410.1:n.188T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000403817
  ensembl transcript: ENST00000454682
  gene symbol: NACA
  hgvsc: ENST00000454682.1:c.5971-19T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446745
  ensembl transcript: ENST00000547914
  gene symbol: NACA
  hgvsc: ENST00000547914.1:c.*18-19T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448035
  ensembl transcript: ENST00000550952
  gene symbol: NACA
  hgvsc: ENST00000550952.1:c.2512-19T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000450383
  ensembl transcript: ENST00000552055
  gene symbol: NACA
  hgvsc: ENST00000552055.1:c.370-19T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446801
  ensembl transcript: ENST00000546392
  gene symbol: NACA
  hgvsc: ENST00000546392.1:c.382-19T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000548386
  gene symbol: NACA
  hgvsc: ENST00000548386.1:n.47-19T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000349212
  ensembl transcript: ENST00000356769
  gene symbol: NACA
  hgvsc: ENST00000356769.3:c.382-19T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000448039
  ensembl transcript: ENST00000550920
  gene symbol: NACA
  hgvsc: ENST00000550920.1:c.376-19T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447705
  ensembl transcript: ENST00000548563
  gene symbol: NACA
  hgvsc: ENST00000548563.1:c.145-19T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl transcript: ENST00000551775
  gene symbol: NACA
  hgvsc: ENST00000551775.1:n.323-19T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000446933
  ensembl transcript: ENST00000546862
  gene symbol: NACA
  hgvsc: ENST00000546862.1:c.145-19T>C
  variant of: http://identifiers.org/hgnc/7629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196531
  ensembl protein: ENSP00000447821
  ensembl transcript: ENST00000552540
  gene symbol: NACA
  hgvsc: ENST00000552540.1:c.382-19T>C
  variant of: http://identifiers.org/hgnc/7629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9299
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14619
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5403
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
reference allele: A

GenotypeQuality
all individuals: 2317
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6921
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3129
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4573
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22060
bin: 9.75e1
variant carriers: 39

GenotypeQuality
all individuals: 65
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5066
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3777
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.184929139301763e-4
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 33
allele frequency: 4.956145620569506e-4
allele num: 66584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQ
type: SiteQuality
SIO_000300: 5.464e1

DP
type: SiteQuality
SIO_000300: 2.555598e6

VQSLOD
type: SiteQuality
SIO_000300: -1.414e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

QD
type: SiteQuality
SIO_000300: 1.227e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.92e-1

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22017
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3775
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3144
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4567
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12527
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6955
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2321
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.597e0

FS
type: SiteQuality
SIO_000300: 1.229e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.034e0

DP
type: SiteQuality
SIO_000300: 2.556306e6

MQ
type: SiteQuality
SIO_000300: 5.62e1

QD
type: SiteQuality
SIO_000300: 1.037e1

MQRankSum
type: SiteQuality
SIO_000300: 8.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22013
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5051
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6945
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4553
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12469
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3771
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

QD
type: SiteQuality
SIO_000300: 1.13e1

FS
type: SiteQuality
SIO_000300: 7.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.339e0

MQ
type: SiteQuality
SIO_000300: 5.645e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.55471e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.068e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.272e0

GenotypeQuality
all individuals: 6922
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3125
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4550
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5046
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12383
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 2.552464e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.846e1

QD
type: SiteQuality
SIO_000300: 1.369e1

GenotypeQuality
all individuals: 6922
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5046
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4550
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12383
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22012
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3125
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

QD
type: SiteQuality
SIO_000300: 1.369e1

MQRankSum
type: SiteQuality
SIO_000300: -2.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.86e-1

FS
type: SiteQuality
SIO_000300: 1.74e0

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

DP
type: SiteQuality
SIO_000300: 2.552464e6

MQ
type: SiteQuality
SIO_000300: 5.846e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

GenotypeQuality
all individuals: 12259
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22010
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4548
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5043
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3125
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6903
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.550976e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.56e0

VQSLOD
type: SiteQuality
SIO_000300: -1.51e0

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.628e1

GenotypeQuality
all individuals: 134
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22008
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.723842862699339e-5
allele num: 10284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.229e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.55034e6

VQSLOD
type: SiteQuality
SIO_000300: -1.621e0

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e-1

MQ
type: SiteQuality
SIO_000300: 5.557e1

FS
type: SiteQuality
SIO_000300: 1.1138e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007518796992481e-5
allele num: 66500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

FS
type: SiteQuality
SIO_000300: 5.15e-1

DP
type: SiteQuality
SIO_000300: 2.537673e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.246e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.774e0

MQ
type: SiteQuality
SIO_000300: 5.781e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3047
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.124e0

MQ
type: SiteQuality
SIO_000300: 5.679e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e0

VQSLOD
type: SiteQuality
SIO_000300: -4.103e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.668e0

DP
type: SiteQuality
SIO_000300: 2.531166e6

QD
type: SiteQuality
SIO_000300: 1.291e1

GenotypeQuality
all individuals: 583
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 351
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variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 72

GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 3754
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 70
allele frequency: 4.242938538004607e-3
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.06e-1

MQ
type: SiteQuality
SIO_000300: 5.762e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

DP
type: SiteQuality
SIO_000300: 2.522358e6

VQSLOD
type: SiteQuality
SIO_000300: -9.059e-1

FS
type: SiteQuality
SIO_000300: 6.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4922
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.737098344693281e-5
allele num: 10270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504573904670197e-5
allele num: 66464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.222e0

DP
type: SiteQuality
SIO_000300: 2.518965e6

MQRankSum
type: SiteQuality
SIO_000300: 8.64e-1

MQ
type: SiteQuality
SIO_000300: 5.844e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.01050666827227e-5
allele num: 66434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
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VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 2.509662e6

FS
type: SiteQuality
SIO_000300: 2.995e0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505615947484116e-5
allele num: 66418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10278
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.156e0

MQRankSum
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QD
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MQ
type: SiteQuality
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FS
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2780
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 100
allele frequency: 9.738994935722634e-3
allele num: 10268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.733402669440111e-4
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.7e-1

QD
type: SiteQuality
SIO_000300: 1.333e1

DP
type: SiteQuality
SIO_000300: 2.487422e6

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

MQ
type: SiteQuality
SIO_000300: 5.793e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.977e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.97e-1

GenotypeQuality
all individuals: 402
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
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GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 36

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2286
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variant carriers: 0

GenotypeQuality
all individuals: 4453
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 37
allele frequency: 4.315372055050152e-3
allele num: 8574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.152e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 5.649999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.03e-1

MQ
type: SiteQuality
SIO_000300: 5.756e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.175e0

DP
type: SiteQuality
SIO_000300: 2.485584e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 523
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variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.64e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

DP
type: SiteQuality
SIO_000300: 4.438235e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.37e-2

FS
type: SiteQuality
SIO_000300: 1.142e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.03e-1

QD
type: SiteQuality
SIO_000300: 7.12e0

MQ
type: SiteQuality
SIO_000300: 5.869e1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 825
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
all individuals: 557
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variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.397865899349579e-4
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.57e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

QD
type: SiteQuality
SIO_000300: 1.336e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.682e0

DP
type: SiteQuality
SIO_000300: 4.439232e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.54e-1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 811
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 877
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GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 841
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 55636
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 567
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GenotypeQuality
all individuals: 700
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2944e1

VQSLOD
type: SiteQuality
SIO_000300: -1.557e0

MQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

QD
type: SiteQuality
SIO_000300: 2.05e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

MQ
type: SiteQuality
SIO_000300: 5.861e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.06e-1

DP
type: SiteQuality
SIO_000300: 4.440296e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.662e0

GenotypeQuality
all individuals: 700
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 780
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.440831e6

FS
type: SiteQuality
SIO_000300: 1.0179e1

MQ
type: SiteQuality
SIO_000300: 5.895e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.692e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 1.12e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.441522e6

MQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

QD
type: SiteQuality
SIO_000300: 1.665e1

VQSLOD
type: SiteQuality
SIO_000300: 2.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

BaseQRankSum
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SIO_000300: -4.293e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.442698e6

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
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ClippingRankSum
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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MQRankSum
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SIO_000300: -1.8e-2

BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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DP
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QD
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SIO_000300: 1.1e1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.495324862143371e-5
allele num: 66736
num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
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ClippingRankSum
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QD
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MQ
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InbreedingCoeff
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VQSLOD
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FS
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DP
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -9.9e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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SIO_000300: 1.402e1

ReadPosRankSum
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SIO_000300: 1.47e0

BaseQRankSum
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FS
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MQ
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ClippingRankSum
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SIO_000300: -4.94e-1

VQSLOD
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DP
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InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 1.18e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

ClippingRankSum
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SIO_000300: -3.49e-1

MQRankSum
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SIO_000300: 3.11e-1

FS
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SIO_000300: 0.0e0

VQSLOD
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BaseQRankSum
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ReadPosRankSum
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DP
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QD
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 1.05e0

MQ
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QD
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DP
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MQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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SIO_000300: -8.23e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.55e-1

ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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MQRankSum
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QD
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 82

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 57363

Latino
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allele count: 9545
allele frequency: 8.245507947477539e-1
allele num: 11576
num of homozygotes: 3946

East Asian
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allele count: 6467
allele frequency: 7.478029602220166e-1
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num of homozygotes: 2412

European (Finnish)
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allele frequency: 8.202298155427881e-1
allele num: 6614
num of homozygotes: 2214

European (Non-Finnish)
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allele frequency: 7.353452409494126e-1
allele num: 66736
num of homozygotes: 18061

African
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allele count: 8926
allele frequency: 8.577743609456083e-1
allele num: 10406
num of homozygotes: 3835

South Asian
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allele count: 13743
allele frequency: 8.323037790697675e-1
allele num: 16512
num of homozygotes: 5753

Other
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allele count: 699
allele frequency: 7.698237885462555e-1
allele num: 908
num of homozygotes: 269

MQ
type: SiteQuality
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VQSLOD
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QD
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InbreedingCoeff
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FS
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DP
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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South Asian
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European (Finnish)
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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DP
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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East Asian
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African
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European (Non-Finnish)
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South Asian
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BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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South Asian
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MQ
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InbreedingCoeff
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FS
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DP
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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MQ
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VQSLOD
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ClippingRankSum
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FS
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QD
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DP
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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East Asian
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European (Finnish)
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ReadPosRankSum
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MQ
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VQSLOD
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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FS
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BaseQRankSum
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InbreedingCoeff
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DP
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MQRankSum
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MQ
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QD
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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African
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South Asian
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European (Finnish)
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QD
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MQ
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FS
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VQSLOD
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InbreedingCoeff
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -3.192e0

VQSLOD
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SIO_000300: -5.438e-1

DP
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SIO_000300: 4.45501e6

FS
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InbreedingCoeff
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SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e-1

QD
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SIO_000300: 1.726e1

MQ
type: SiteQuality
SIO_000300: 5.9e1

GenotypeDepth
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 6.058403004967891e-5
allele num: 16506
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ReadPosRankSum
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SIO_000300: -3.42e-1

VQSLOD
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MQ
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 5.99e0

QD
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BaseQRankSum
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SIO_000300: 6.13e-1

DP
type: SiteQuality
SIO_000300: 4.452762e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997332374186974e-5
allele num: 66726
num of homozygotes: 0

African
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num of homozygotes: 0

Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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num of homozygotes: 0

East Asian
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FS
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DP
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VQSLOD
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ClippingRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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SIO_000300: -1.19e-1

ReadPosRankSum
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SIO_000300: -3.42e-1

MQ
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SIO_000300: 5.738e1

GenotypeDepth
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
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African
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South Asian
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European (Non-Finnish)
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allele num: 66730
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BaseQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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MQ
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DP
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FS
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MQRankSum
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ClippingRankSum
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SIO_000300: 9.69e-1

ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Latino
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allele num: 11574
num of homozygotes: 0

East Asian
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South Asian
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Other
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num of homozygotes: 0

European (Finnish)
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BaseQRankSum
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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DP
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QD
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ClippingRankSum
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SIO_000300: 9.69e-1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.676795045480937e-5
allele num: 10334
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 20
allele frequency: 2.997332374186974e-4
allele num: 66726
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

East Asian
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Other
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South Asian
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ClippingRankSum
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MQRankSum
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MQ
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FS
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ReadPosRankSum
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DP
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QD
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 780
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variant carriers: 0

European (Non-Finnish)
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allele count: 23
allele frequency: 3.44693223031502e-4
allele num: 66726
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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African
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Latino
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European (Finnish)
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allele num: 6614
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InbreedingCoeff
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MQ
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BaseQRankSum
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 2.9120559114735e-4
allele num: 10302
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
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BaseQRankSum
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ClippingRankSum
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FS
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MQ
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SIO_000300: 5.776e1

MQRankSum
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SIO_000300: -2.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.09e-1

DP
type: SiteQuality
SIO_000300: 4.447413e6

QD
type: SiteQuality
SIO_000300: 1.261e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.641342074816814e-5
allele num: 10372
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.52e-1

DP
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SIO_000300: 3.780809e6

InbreedingCoeff
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SIO_000300: 1.3e-3

QD
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MQ
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SIO_000300: 5.692e1

FS
type: SiteQuality
SIO_000300: 2.31e0

BaseQRankSum
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SIO_000300: -2.662e0

MQRankSum
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SIO_000300: -3.07e-1

ClippingRankSum
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SIO_000300: -6.17e-1

VQSLOD
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SIO_000300: -1.054e0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 14
allele frequency: 1.349787890474354e-3
allele num: 10372
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.635e1

FS
type: SiteQuality
SIO_000300: 1.207e0

ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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DP
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SIO_000300: 3.781498e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1680
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.665571235260003e-5
allele num: 10346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
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SIO_000300: 1.48e0

DP
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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SIO_000300: 5.6e1

FS
type: SiteQuality
SIO_000300: 2.929e0

QD
type: SiteQuality
SIO_000300: 1.162e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.9e-1

MQRankSum
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SIO_000300: 1.48e0

ReadPosRankSum
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FS
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DP
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InbreedingCoeff
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MQ
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QD
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ClippingRankSum
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SIO_000300: -1.215e0

VQSLOD
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SIO_000300: -1.405e0

GenotypeDepth
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variant carriers: 4903

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 51398

GenotypeQuality
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bin: 6.25e1
variant carriers: 77

South Asian
type: Population
allele count: 12225
allele frequency: 7.409989089586616e-1
allele num: 16498
num of homozygotes: 4555

East Asian
type: Population
allele count: 6432
allele frequency: 7.435838150289017e-1
allele num: 8650
num of homozygotes: 2382

Latino
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allele count: 8694
allele frequency: 7.516859761369531e-1
allele num: 11566
num of homozygotes: 3297

African
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allele count: 4221
allele frequency: 4.073537927041112e-1
allele num: 10362
num of homozygotes: 876

European (Non-Finnish)
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allele count: 42377
allele frequency: 6.35566020757094e-1
allele num: 66676
num of homozygotes: 13538

European (Finnish)
type: Population
allele count: 4773
allele frequency: 7.216510432416087e-1
allele num: 6614
num of homozygotes: 1705

Other
type: Population
allele count: 584
allele frequency: 6.445916114790287e-1
allele num: 906
num of homozygotes: 187

FS
type: SiteQuality
SIO_000300: 5.39e-1

MQ
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
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MQRankSum
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QD
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SIO_000300: 2.497e1

InbreedingCoeff
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SIO_000300: 4.43e-2

ClippingRankSum
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SIO_000300: -3.53e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 549
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

South Asian
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allele count: 12
allele frequency: 7.271845836868258e-4
allele num: 16502
num of homozygotes: 0

European (Finnish)
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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FS
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MQRankSum
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MQ
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2429
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GenotypeQuality
all individuals: 83
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African
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South Asian
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Latino
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East Asian
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DP
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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MQ
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MQRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Non-Finnish)
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ClippingRankSum
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MQ
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QD
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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VQSLOD
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InbreedingCoeff
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DP
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BaseQRankSum
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FS
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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East Asian
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European (Finnish)
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African
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South Asian
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BaseQRankSum
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QD
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MQRankSum
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ReadPosRankSum
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MQ
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FS
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VQSLOD
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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East Asian
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QD
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MQ
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InbreedingCoeff
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BaseQRankSum
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FS
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MQRankSum
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DP
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VQSLOD
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GenotypeQuality
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African
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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MQ
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DP
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GenotypeDepth
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African
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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European (Finnish)
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Other
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East Asian
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QD
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ClippingRankSum
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DP
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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Other
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African
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Latino
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European (Non-Finnish)
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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QD
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MQ
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InbreedingCoeff
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FS
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Other
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African
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Latino
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European (Non-Finnish)
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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MQRankSum
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FS
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ClippingRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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European (Finnish)
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East Asian
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Other
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QD
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ClippingRankSum
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MQRankSum
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DP
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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VQSLOD
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FS
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QD
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MQ
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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DP
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South Asian
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African
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European (Non-Finnish)
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East Asian
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FS
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11242
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3861
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1471
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5060
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.28439583538608e-5
allele num: 60894
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.006e1

VQSLOD
type: SiteQuality
SIO_000300: -1.421e0

DP
type: SiteQuality
SIO_000300: 1.547934e6

MQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.71e-1

MQ
type: SiteQuality
SIO_000300: 5.75e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

GenotypeDepth
all individuals: 5541
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 330
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2480
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17489
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 853
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5574
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 65
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25054
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3860
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14287
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2581
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2558
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4336
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7650
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.39467962655071e-5
allele num: 15638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9284
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

MQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

QD
type: SiteQuality
SIO_000300: 1.565e1

VQSLOD
type: SiteQuality
SIO_000300: -3.185e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.78e-1

DP
type: SiteQuality
SIO_000300: 1.47102e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-1

GenotypeDepth
all individuals: 2597
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5495
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17040
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1734
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 947
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 892
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
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variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14772
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2695
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4196
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2745
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24769
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.682708487581611e-5
allele num: 59428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.575e1

FS
type: SiteQuality
SIO_000300: 9.17e0

DP
type: SiteQuality
SIO_000300: 1.458482e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.388e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.679e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.528e0

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.648e0

GenotypeDepth
all individuals: 2756
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 854
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 941
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 626
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 91
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4160
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2877
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23980
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2945
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15272
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3866
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1313
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.083188908145581e-4
allele num: 9232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59366
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.991e-1

DP
type: SiteQuality
SIO_000300: 1.444552e6

MQ
type: SiteQuality
SIO_000300: 5.741e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.406e0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-1

FS
type: SiteQuality
SIO_000300: 8.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

GenotypeDepth
all individuals: 91
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 356
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 395
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16595
bin: 2.75e1
variant carriers: 2

GenotypeDepth
all individuals: 854
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 65
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 626
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2945
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15272
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2877
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3866
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 23980
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4160
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6308
num of homozygotes: 0