11-59560627-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560627
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560627
    reference: chr 11
allele count: 1
allele frequency: 8.61163259330704e-6
allele num: 116122
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.522G>C
  hgvsp: ENST00000337979.4:c.522G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.429G>C
  hgvsp: ENST00000300150.7:c.429G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.522G>C
  hgvsp: ENST00000535361.1:c.522G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.231G>C
  hgvsp: ENST00000437946.2:c.231G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.522G>C
  hgvsp: ENST00000529177.1:c.522G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.378G>C
  hgvsp: ENST00000528805.1:c.378G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*290G>C
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3893
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34964
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro174Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

11-59560627-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560627
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560627
    reference: chr 11
allele count: 1
allele frequency: 8.61163259330704e-6
allele num: 116122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.231G>A
  hgvsp: ENST00000437946.2:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.522G>A
  hgvsp: ENST00000337979.4:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.522G>A
  hgvsp: ENST00000529177.1:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.378G>A
  hgvsp: ENST00000528805.1:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.429G>A
  hgvsp: ENST00000300150.7:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.522G>A
  hgvsp: ENST00000535361.1:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*290G>A
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3893
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4685
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro174Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

11-59560634-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560634
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560634
    reference: chr 11
allele count: 1
allele frequency: 8.64169792080748e-6
allele num: 115718
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.238T>C
  hgvsp: ENSP00000393536.2:p.Phe80Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.385T>C
  hgvsp: ENSP00000431386.1:p.Phe129Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.436T>C
  hgvsp: ENSP00000300150.7:p.Phe146Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*297T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.529T>C
  hgvsp: ENSP00000433248.1:p.Phe177Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.529T>C
  hgvsp: ENSP00000338562.4:p.Phe177Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.529T>C
  hgvsp: ENSP00000441649.1:p.Phe177Leu
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11138
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4616
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4664
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe177Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

11-59560637-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560637
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560637
    reference: chr 11
allele count: 4
allele frequency: 3.463383379223163e-5
allele num: 115494
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.532A>G
  hgvsp: ENSP00000433248.1:p.Thr178Ala
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.532A>G
  hgvsp: ENSP00000338562.4:p.Thr178Ala
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.241A>G
  hgvsp: ENSP00000393536.2:p.Thr81Ala
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.532A>G
  hgvsp: ENSP00000441649.1:p.Thr178Ala
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.439A>G
  hgvsp: ENSP00000300150.7:p.Thr147Ala
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*300A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.388A>G
  hgvsp: ENSP00000431386.1:p.Thr130Ala
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10975
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr178Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-59560645-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560645
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560645
    reference: chr 11
allele count: 235
allele frequency: 2.043833710210471e-3
allele num: 114980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*308G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.396G>A
  hgvsp: ENST00000528805.1:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.540G>A
  hgvsp: ENST00000337979.4:c.540G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.447G>A
  hgvsp: ENST00000300150.7:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.249G>A
  hgvsp: ENST00000437946.2:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.540G>A
  hgvsp: ENST00000529177.1:c.540G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.540G>A
  hgvsp: ENST00000535361.1:c.540G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10440
  bin: 2.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 25213
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 9.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 7.75e1
  variant carriers: 0
hgvs: c.540G>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

11-59560650-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560650
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560650
    reference: chr 11
allele count: 4
allele frequency: 3.492046863268905e-5
allele num: 114546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.540+5G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.396+5G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*308+5G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.540+5G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.540+5G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.447+5G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.249+5G>A
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2337
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5480
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 9.25e1
  variant carriers: 0
hgvs: c.540+5G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-59560654-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560654
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560654
    reference: chr 11
allele count: 1
allele frequency: 8.749518776467294e-6
allele num: 114292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.447+9C>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*308+9C>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.540+9C>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.396+9C>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.249+9C>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.540+9C>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.540+9C>A
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24679
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5476
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP

11-59560656-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560656
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560656
    reference: chr 11
allele count: 2
allele frequency: 1.750945510575711e-5
allele num: 114224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.396+11T>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*308+11T>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.249+11T>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.540+11T>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.540+11T>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.447+11T>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.540+11T>G
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20996
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3619
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2625
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2499
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ

11-59560664-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560664
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560664
    reference: chr 11
allele count: 1
allele frequency: 8.807468733485996e-6
allele num: 113540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.447+19C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.540+19C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.396+19C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.540+19C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.249+19C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*308+19C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.540+19C>T
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3002
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4279
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7685
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

11-59560665-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560665
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560665
    reference: chr 11
allele count: 1
allele frequency: 8.815077308227993e-6
allele num: 113442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.396+20G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.249+20G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.540+20G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*308+20G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.540+20G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.447+20G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.540+20G>A
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7010
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4007
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5474
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3060
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

11-59560670-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560670
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560670
    reference: chr 11
allele count: 1
allele frequency: 8.824256115209487e-6
allele num: 113324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*308+25G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.540+25G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.396+25G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.540+25G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.540+25G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.249+25G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.447+25G>A
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9359
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4703
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20548
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

11-59560676-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560676
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560676
    reference: chr 11
allele count: 1
allele frequency: 8.870910510254773e-6
allele num: 112728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.249+31C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.540+31C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.540+31C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.540+31C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*308+31C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.447+31C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.396+31C>T
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4211
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3573
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8052
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16760
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

11-59560682-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560682
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560682
    reference: chr 11
allele count: 4
allele frequency: 3.57493967289302e-5
allele num: 111890
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.540+37C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.447+37C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*308+37C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.540+37C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.396+37C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.540+37C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.249+37C>T
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11186
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14599
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7922
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3750
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5459
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

11-59560683-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560683
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560683
    reference: chr 11
allele count: 625
allele frequency: 5.581752581002393e-3
allele num: 111972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.396+38G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.540+38G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.540+38G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.540+38G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*308+38G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.447+38G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.249+38G>A
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 11169
  bin: 1.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10624
  bin: 1.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8477
  bin: 2.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 14601
  bin: 2.25e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 3.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 3.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7922
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5433
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5974
  bin: 9.75e1
  variant carriers: 609
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 9.25e1
  variant carriers: 4
num of homozygotes: 4
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

11-59560693-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560693
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560693
    reference: chr 11
allele count: 2
allele frequency: 1.794075961176196e-5
allele num: 111478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.540+48A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*308+48A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.396+48A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.540+48A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.249+48A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.447+48A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.540+48A>G
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10858
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5479
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3726
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12727
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

11-59560696-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560696
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560696
    reference: chr 11
allele count: 1
allele frequency: 9.002034459787913e-6
allele num: 111086
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.249+51C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.447+51C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.540+51C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.396+51C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.540+51C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*308+51C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.540+51C>T
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10771
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4965
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11089
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3698
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2043
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7044
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

11-59560803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560803
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560803
    reference: chr 11
allele count: 4
allele frequency: 3.341910904655282e-5
allele num: 119692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.541-50G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.541-50G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*309-50G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.397-50G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.250-50G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.541-50G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.448-50G>A
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9675
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9074
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8164
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22764
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

11-59560806-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560806
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560806
    reference: chr 11
allele count: 1
allele frequency: 8.360644772924887e-6
allele num: 119608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.541-47G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.397-47G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.448-47G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.541-47G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*309-47G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.541-47G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.250-47G>A
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4382
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3732
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2947
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

11-59560814-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560814
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560815
    reference: chr 11
allele count: 1
allele frequency: 8.354079296920687e-6
allele num: 119702
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.250-38dupG
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*309-38dupG
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.541-38dupG
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.541-38dupG
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.448-38dupG
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.397-38dupG
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.541-38dupG
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 8597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2940
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

11-59560815-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560815
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560815
    reference: chr 11
allele count: 1
allele frequency: 8.355754608198667e-6
allele num: 119678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*309-38G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.541-38G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.541-38G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.250-38G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.448-38G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.397-38G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.541-38G>T
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3734
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22727
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

11-59560820-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560820
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560820
    reference: chr 11
allele count: 1
allele frequency: 8.350730688935283e-6
allele num: 119750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.397-33G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.541-33G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*309-33G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.250-33G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.448-33G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.541-33G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.541-33G>A
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9711
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4473
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

11-59560822-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560822
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560821
    reference: chr 11
allele count: 1
allele frequency: 8.370722560771445e-6
allele num: 119464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.448-30delA
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.541-30delA
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*309-30delA
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.541-30delA
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.397-30delA
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.541-30delA
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.250-30delA
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9663
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4392
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: TA
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

11-59560833-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560833
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560833
    reference: chr 11
allele count: 1
allele frequency: 8.335695113615524e-6
allele num: 119966
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.250-20C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*309-20C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.397-20C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.448-20C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.541-20C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.541-20C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.541-20C>T
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4389
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4474
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22719
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

11-59560847-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560847
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560847
    reference: chr 11
allele count: 1
allele frequency: 8.309650828472188e-6
allele num: 120342
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.541-6T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*309-6T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.541-6T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.448-6T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.250-6T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.397-6T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.541-6T>C
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9032
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5388
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12129
  bin: 6.25e1
  variant carriers: 0
hgvs: c.541-6T>C
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

11-59560854-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560854
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560854
    reference: chr 11
allele count: 1
allele frequency: 8.300546175938376e-6
allele num: 120474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.398T>A
  hgvsp: ENSP00000431386.1:p.Ile133Asn
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.542T>A
  hgvsp: ENSP00000338562.4:p.Ile181Asn
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*310T>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.542T>A
  hgvsp: ENSP00000433248.1:p.Ile181Asn
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.542T>A
  hgvsp: ENSP00000441649.1:p.Ile181Asn
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.251T>A
  hgvsp: ENSP00000393536.2:p.Ile84Asn
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.449T>A
  hgvsp: ENSP00000300150.7:p.Ile150Asn
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22716
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4393
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile181Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/11-59560856-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560856
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560856
    reference: chr 11
allele count: 1
allele frequency: 8.296827293243064e-6
allele num: 120528
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.400A>C
  hgvsp: ENSP00000431386.1:p.Ile134Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.544A>C
  hgvsp: ENSP00000441649.1:p.Ile182Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.544A>C
  hgvsp: ENSP00000338562.4:p.Ile182Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*312A>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.544A>C
  hgvsp: ENSP00000433248.1:p.Ile182Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.253A>C
  hgvsp: ENSP00000393536.2:p.Ile85Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.451A>C
  hgvsp: ENSP00000300150.7:p.Ile151Leu
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3729
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4494
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12947
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile182Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

11-59560856-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560856
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560856
    reference: chr 11
allele count: 2
allele frequency: 1.659365458648613e-5
allele num: 120528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.544A>G
  hgvsp: ENSP00000433248.1:p.Ile182Val
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.544A>G
  hgvsp: ENSP00000338562.4:p.Ile182Val
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.253A>G
  hgvsp: ENSP00000393536.2:p.Ile85Val
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.544A>G
  hgvsp: ENSP00000441649.1:p.Ile182Val
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.451A>G
  hgvsp: ENSP00000300150.7:p.Ile151Val
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.400A>G
  hgvsp: ENSP00000431386.1:p.Ile134Val
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*312A>G
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22716
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4388
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile182Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

11-59560872-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560872
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560872
    reference: chr 11
allele count: 1
allele frequency: 8.269109913008963e-6
allele num: 120932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.416C>G
  hgvsp: ENSP00000431386.1:p.Ser139Cys
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.560C>G
  hgvsp: ENSP00000433248.1:p.Ser187Cys
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.467C>G
  hgvsp: ENSP00000300150.7:p.Ser156Cys
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.269C>G
  hgvsp: ENSP00000393536.2:p.Ser90Cys
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.560C>G
  hgvsp: ENSP00000338562.4:p.Ser187Cys
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.560C>G
  hgvsp: ENSP00000441649.1:p.Ser187Cys
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*328C>G
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser187Cys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

11-59560875-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560875
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560875
    reference: chr 11
allele count: 3
allele frequency: 2.479174930583102e-5
allele num: 121008
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*331A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.470A>G
  hgvsp: ENSP00000300150.7:p.Lys157Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.419A>G
  hgvsp: ENSP00000431386.1:p.Lys140Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.563A>G
  hgvsp: ENSP00000338562.4:p.Lys188Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.272A>G
  hgvsp: ENSP00000393536.2:p.Lys91Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.563A>G
  hgvsp: ENSP00000433248.1:p.Lys188Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.563A>G
  hgvsp: ENSP00000441649.1:p.Lys188Arg
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4386
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3006
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22715
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13846
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys188Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

11-59560896-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560896
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560895
    reference: chr 11
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.587delG
  hgvsp: ENSP00000338562.4:p.Gly196AspfsTer7
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.296delG
  hgvsp: ENSP00000393536.2:p.Gly99AspfsTer7
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.587delG
  hgvsp: ENSP00000441649.1:p.Gly196AspfsTer7
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.443delG
  hgvsp: ENSP00000431386.1:p.Gly148AspfsTer7
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*355delG
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.494delG
  hgvsp: ENSP00000300150.7:p.Gly165AspfsTer7
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.587delG
  hgvsp: ENSP00000433248.1:p.Gly196AspfsTer7
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3722
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4386
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly196AspfsTer7
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: AG
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

11-59560901-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560901
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560901
    reference: chr 11
allele count: 2
allele frequency: 1.649783878311941e-5
allele num: 121228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.589C>T
  hgvsp: ENSP00000433248.1:p.Arg197Ter
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.589C>T
  hgvsp: ENSP00000338562.4:p.Arg197Ter
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.445C>T
  hgvsp: ENSP00000431386.1:p.Arg149Ter
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*357C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.496C>T
  hgvsp: ENSP00000300150.7:p.Arg166Ter
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.589C>T
  hgvsp: ENSP00000441649.1:p.Arg197Ter
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.298C>T
  hgvsp: ENSP00000393536.2:p.Arg100Ter
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4492
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4386
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg197Ter
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ

11-59560902-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560902
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560902
    reference: chr 11
allele count: 2
allele frequency: 1.649783878311941e-5
allele num: 121228
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.590G>A
  hgvsp: ENSP00000338562.4:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*358G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.497G>A
  hgvsp: ENSP00000300150.7:p.Arg166Gln
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.299G>A
  hgvsp: ENSP00000393536.2:p.Arg100Gln
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.590G>A
  hgvsp: ENSP00000441649.1:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.446G>A
  hgvsp: ENSP00000431386.1:p.Arg149Gln
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.590G>A
  hgvsp: ENSP00000433248.1:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9054
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5511
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3720
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4496
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg197Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

11-59560902-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560902
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560902
    reference: chr 11
allele count: 9
allele frequency: 7.424027452403735e-5
allele num: 121228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.590G>T
  hgvsp: ENSP00000441649.1:p.Arg197Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.590G>T
  hgvsp: ENSP00000433248.1:p.Arg197Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.497G>T
  hgvsp: ENSP00000300150.7:p.Arg166Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.299G>T
  hgvsp: ENSP00000393536.2:p.Arg100Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*358G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.590G>T
  hgvsp: ENSP00000338562.4:p.Arg197Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.446G>T
  hgvsp: ENSP00000431386.1:p.Arg149Leu
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7755
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22712
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg197Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

11-59560904-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560904
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560904
    reference: chr 11
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.301C>T
  hgvsp: ENSP00000393536.2:p.His101Tyr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.592C>T
  hgvsp: ENSP00000338562.4:p.His198Tyr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.448C>T
  hgvsp: ENSP00000431386.1:p.His150Tyr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*360C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.592C>T
  hgvsp: ENSP00000441649.1:p.His198Tyr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.592C>T
  hgvsp: ENSP00000433248.1:p.His198Tyr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.499C>T
  hgvsp: ENSP00000300150.7:p.His167Tyr
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5512
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4386
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His198Tyr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-59560905-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560905
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560905
    reference: chr 11
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.593A>G
  hgvsp: ENSP00000338562.4:p.His198Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.449A>G
  hgvsp: ENSP00000431386.1:p.His150Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.500A>G
  hgvsp: ENSP00000300150.7:p.His167Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.302A>G
  hgvsp: ENSP00000393536.2:p.His101Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*361A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.593A>G
  hgvsp: ENSP00000441649.1:p.His198Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.593A>G
  hgvsp: ENSP00000433248.1:p.His198Arg
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9051
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14232
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3720
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His198Arg
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

11-59560918-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560918
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560918
    reference: chr 11
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.315G>A
  hgvsp: ENST00000437946.2:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.606G>A
  hgvsp: ENST00000535361.1:c.606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.606G>A
  hgvsp: ENST00000337979.4:c.606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.606G>A
  hgvsp: ENST00000529177.1:c.606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*374G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.462G>A
  hgvsp: ENST00000528805.1:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.513G>A
  hgvsp: ENST00000300150.7:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4383
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val202Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ

11-59560923-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560923
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560923
    reference: chr 11
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.320T>C
  hgvsp: ENSP00000393536.2:p.Leu107Pro
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.611T>C
  hgvsp: ENSP00000441649.1:p.Leu204Pro
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.611T>C
  hgvsp: ENSP00000433248.1:p.Leu204Pro
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.467T>C
  hgvsp: ENSP00000431386.1:p.Leu156Pro
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.518T>C
  hgvsp: ENSP00000300150.7:p.Leu173Pro
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*379T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.611T>C
  hgvsp: ENSP00000338562.4:p.Leu204Pro
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9050
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4377
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu204Pro
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS

http://identifiers.org/exac.variant/11-59560931-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560931
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560931
    reference: chr 11
allele count: 4
allele frequency: 3.299622193258872e-5
allele num: 121226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.328A>C
  hgvsp: ENSP00000393536.2:p.Ser110Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.526A>C
  hgvsp: ENSP00000300150.7:p.Ser176Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*387A>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.619A>C
  hgvsp: ENSP00000433248.1:p.Ser207Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.619A>C
  hgvsp: ENSP00000441649.1:p.Ser207Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.475A>C
  hgvsp: ENSP00000431386.1:p.Ser159Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.619A>C
  hgvsp: ENSP00000338562.4:p.Ser207Arg
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9050
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4479
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4381
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5494
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3710
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser207Arg
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

11-59560932-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560932
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560932
    reference: chr 11
allele count: 4
allele frequency: 3.299676631690094e-5
allele num: 121224
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.329G>T
  hgvsp: ENSP00000393536.2:p.Ser110Ile
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.620G>T
  hgvsp: ENSP00000441649.1:p.Ser207Ile
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.527G>T
  hgvsp: ENSP00000300150.7:p.Ser176Ile
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.620G>T
  hgvsp: ENSP00000433248.1:p.Ser207Ile
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*388G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.476G>T
  hgvsp: ENSP00000431386.1:p.Ser159Ile
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.620G>T
  hgvsp: ENSP00000338562.4:p.Ser207Ile
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5491
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser207Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

11-59560933-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560933
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560933
    reference: chr 11
allele count: 4
allele frequency: 3.299622193258872e-5
allele num: 121226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.528C>T
  hgvsp: ENST00000300150.7:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*389C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.621C>T
  hgvsp: ENST00000529177.1:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.477C>T
  hgvsp: ENST00000528805.1:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.621C>T
  hgvsp: ENST00000337979.4:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.330C>T
  hgvsp: ENST00000437946.2:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.621C>T
  hgvsp: ENST00000535361.1:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3710
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4478
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22709
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Ser207Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

11-59560939-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560939
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560939
    reference: chr 11
allele count: 2
allele frequency: 1.650137786505173e-5
allele num: 121202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.534G>A
  hgvsp: ENST00000300150.7:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.627G>A
  hgvsp: ENST00000529177.1:c.627G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*395G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.483G>A
  hgvsp: ENST00000528805.1:c.483G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.627G>A
  hgvsp: ENST00000337979.4:c.627G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.627G>A
  hgvsp: ENST00000535361.1:c.627G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.336G>A
  hgvsp: ENST00000437946.2:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14205
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22708
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3711
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5482
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys209Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum

11-59560946-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560946
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560946
    reference: chr 11
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.490C>T
  hgvsp: ENSP00000431386.1:p.His164Tyr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*402C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.541C>T
  hgvsp: ENSP00000300150.7:p.His181Tyr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.634C>T
  hgvsp: ENSP00000338562.4:p.His212Tyr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.634C>T
  hgvsp: ENSP00000441649.1:p.His212Tyr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.634C>T
  hgvsp: ENSP00000433248.1:p.His212Tyr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.343C>T
  hgvsp: ENSP00000393536.2:p.His115Tyr
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14186
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5476
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His212Tyr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

11-59560948-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560948
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560948
    reference: chr 11
allele count: 1
allele frequency: 8.254911672445104e-6
allele num: 121140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.543C>T
  hgvsp: ENST00000300150.7:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.492C>T
  hgvsp: ENST00000528805.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*404C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.636C>T
  hgvsp: ENST00000535361.1:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.345C>T
  hgvsp: ENST00000437946.2:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.636C>T
  hgvsp: ENST00000337979.4:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.636C>T
  hgvsp: ENST00000529177.1:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9045
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14163
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4480
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22705
  bin: 9.75e1
  variant carriers: 1
hgvs: p.His212His
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

11-59560953-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560953
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560953
    reference: chr 11
allele count: 1
allele frequency: 8.259138737012504e-6
allele num: 121078
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.641T>C
  hgvsp: ENSP00000338562.4:p.Met214Thr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.497T>C
  hgvsp: ENSP00000431386.1:p.Met166Thr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.641T>C
  hgvsp: ENSP00000441649.1:p.Met214Thr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*409T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.548T>C
  hgvsp: ENSP00000300150.7:p.Met183Thr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.641T>C
  hgvsp: ENSP00000433248.1:p.Met214Thr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.2T>C
  hgvsp: ENSP00000434836.1:p.Met1?
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.350T>C
  hgvsp: ENSP00000393536.2:p.Met117Thr
  variant of: http://identifiers.org/hgnc/11438
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3712
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22704
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

11-59560957-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560957
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560957
    reference: chr 11
allele count: 47
allele frequency: 3.884554350700873e-4
allele num: 120992
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.645T>C
  hgvsp: ENST00000529177.1:c.645T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.354T>C
  hgvsp: ENST00000437946.2:c.354T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.645T>C
  hgvsp: ENST00000337979.4:c.645T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.645T>C
  hgvsp: ENST00000535361.1:c.645T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.501T>C
  hgvsp: ENST00000528805.1:c.501T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.552T>C
  hgvsp: ENST00000300150.7:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*413T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.6T>C
  hgvsp: ENST00000530221.1:c.6T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9034
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9890
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4374
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe215Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/11-59560966-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560966
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560966
    reference: chr 11
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.561C>A
  hgvsp: ENST00000300150.7:c.561C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.654C>A
  hgvsp: ENST00000529177.1:c.654C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.510C>A
  hgvsp: ENST00000528805.1:c.510C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.654C>A
  hgvsp: ENST00000337979.4:c.654C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.654C>A
  hgvsp: ENST00000535361.1:c.654C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*422C>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.363C>A
  hgvsp: ENST00000437946.2:c.363C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.15C>A
  hgvsp: ENST00000530221.1:c.15C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3713
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile218Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

11-59560966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560966
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560966
    reference: chr 11
allele count: 2
allele frequency: 1.656232402530723e-5
allele num: 120756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.654C>T
  hgvsp: ENST00000529177.1:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.15C>T
  hgvsp: ENST00000530221.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*422C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.363C>T
  hgvsp: ENST00000437946.2:c.363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.654C>T
  hgvsp: ENST00000535361.1:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.654C>T
  hgvsp: ENST00000337979.4:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.510C>T
  hgvsp: ENST00000528805.1:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.561C>T
  hgvsp: ENST00000300150.7:c.561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4366
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile218Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

11-59560967-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560967
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560967
    reference: chr 11
allele count: 6
allele frequency: 4.969437956567113e-5
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.16G>A
  hgvsp: ENSP00000434836.1:p.Ala6Thr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.511G>A
  hgvsp: ENSP00000431386.1:p.Ala171Thr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.562G>A
  hgvsp: ENSP00000300150.7:p.Ala188Thr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*423G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.655G>A
  hgvsp: ENSP00000441649.1:p.Ala219Thr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.655G>A
  hgvsp: ENSP00000433248.1:p.Ala219Thr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.364G>A
  hgvsp: ENSP00000393536.2:p.Ala122Thr
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.655G>A
  hgvsp: ENSP00000338562.4:p.Ala219Thr
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9038
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10032
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala219Thr
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

11-59560976-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560976
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560976
    reference: chr 11
allele count: 2
allele frequency: 1.661074382910867e-5
allele num: 120404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.664G>T
  hgvsp: ENSP00000338562.4:p.Val222Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.664G>T
  hgvsp: ENSP00000433248.1:p.Val222Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.664G>T
  hgvsp: ENSP00000441649.1:p.Val222Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.520G>T
  hgvsp: ENSP00000431386.1:p.Val174Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.25G>T
  hgvsp: ENSP00000434836.1:p.Val9Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.571G>T
  hgvsp: ENSP00000300150.7:p.Val191Leu
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*432G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.373G>T
  hgvsp: ENSP00000393536.2:p.Val125Leu
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3715
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val222Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

11-59560986-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59560986
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59560986
    reference: chr 11
allele count: 1
allele frequency: 8.331666999933347e-6
allele num: 120024
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*442A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.674A>G
  hgvsp: ENSP00000433248.1:p.Gln225Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.674A>G
  hgvsp: ENSP00000441649.1:p.Gln225Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.35A>G
  hgvsp: ENSP00000434836.1:p.Gln12Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.674A>G
  hgvsp: ENSP00000338562.4:p.Gln225Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.530A>G
  hgvsp: ENSP00000431386.1:p.Gln177Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.383A>G
  hgvsp: ENSP00000393536.2:p.Gln128Arg
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.581A>G
  hgvsp: ENSP00000300150.7:p.Gln194Arg
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9778
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2894
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln225Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ

11-59561000-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59561000
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59561000
    reference: chr 11
allele count: 2
allele frequency: 1.675097993232604e-5
allele num: 119396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+13G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.675+13G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.675+13G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*443+13G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+13G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.582+13G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.384+13G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.36+13G>A
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9077
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5996
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7745
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9017
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10680
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

11-59561005-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59561005
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59561005
    reference: chr 11
allele count: 1
allele frequency: 8.389965601141035e-6
allele num: 119190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+18C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*443+18C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.384+18C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+18C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.36+18C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.675+18C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.675+18C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.582+18C>T
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10365
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22696
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4342
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

11-59561009-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59561009
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59561009
    reference: chr 11
allele count: 2
allele frequency: 1.682283868579984e-5
allele num: 118886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+22C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.675+22C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.582+22C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.675+22C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+22C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.384+22C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.36+22C>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*443+22C>T
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8999
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2353
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4984
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

11-59561010-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59561010
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59561010
    reference: chr 11
allele count: 3
allele frequency: 2.521644111960999e-5
allele num: 118970
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.675+23G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+23G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+23G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*443+23G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.384+23G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.582+23G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.36+23G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.675+23G>A
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22980
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3679
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4959
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

11-59561010-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59561010
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59561010
    reference: chr 11
allele count: 1
allele frequency: 8.405480373203328e-6
allele num: 118970
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.675+23G>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.36+23G>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.582+23G>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*443+23G>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.384+23G>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+23G>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+23G>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.675+23G>C
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4316
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3679
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22980
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

11-59561010-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59561010
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59561010
    reference: chr 11
allele count: 550
allele frequency: 4.623014205261831e-3
allele num: 118970
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.675+23G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.384+23G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.675+23G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+23G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.582+23G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+23G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*443+23G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.36+23G>T
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 4.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 5.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 1.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 2.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 6.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8691
  bin: 2.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 3.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 1.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 4.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 9591
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 5.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3679
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4959
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22980
  bin: 9.75e1
  variant carriers: 532
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 8
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS

11-59561017-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59561017
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59561017
    reference: chr 11
allele count: 1
allele frequency: 8.438391305081599e-6
allele num: 118506
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.675+30G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.36+30G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.675+30G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.384+30G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*443+30G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.582+30G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+30G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+30G>A
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5987
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9578
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4327
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4891
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22598
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3701
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

11-59561017-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59561017
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59561017
    reference: chr 11
allele count: 1
allele frequency: 8.438391305081599e-6
allele num: 118506
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*443+30G>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+30G>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.582+30G>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.384+30G>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+30G>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.675+30G>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.36+30G>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.675+30G>C
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5987
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9134
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD

11-59561018-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59561018
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59561018
    reference: chr 11
allele count: 14
allele frequency: 1.181953262191004e-4
allele num: 118448
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.675+31G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+31G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.582+31G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*443+31G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.384+31G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.36+31G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.675+31G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+31G>T
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8990
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9571
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8310
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7698
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4325
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2351
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

11-59561020-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59561020
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59561020
    reference: chr 11
allele count: 1
allele frequency: 8.454085859695991e-6
allele num: 118286
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.675+33A>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.582+33A>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+33A>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.384+33A>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.675+33A>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.36+33A>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*443+33A>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+33A>T
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4333
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3700
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

11-59561027-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59561027
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59561027
    reference: chr 11
allele count: 4
allele frequency: 3.393569186391787e-5
allele num: 117870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.384+40G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.582+40G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+40G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.675+40G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.36+40G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.675+40G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+40G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*443+40G>A
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9326
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4603
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

11-59561035-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59561035
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59561034
    reference: chr 11
allele count: 1
allele frequency: 8.526166805927391e-6
allele num: 117286
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.675+51delG
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+51delG
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+51delG
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.582+51delG
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.675+51delG
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.36+51delG
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.384+51delG
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*443+51delG
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6485
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22577
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: AG
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS

11-59562797-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59562797
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59562797
    reference: chr 11
allele count: 3
allele frequency: 3.959246159531226e-5
allele num: 75772
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+1810A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.385-278A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.583-48A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.676-48A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*444-278A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+1810A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.676-48A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.37-48A>G
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17774
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13295
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4690
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5532
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7717
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

11-59562798-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59562798
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59562798
    reference: chr 11
allele count: 2
allele frequency: 2.641170566795204e-5
allele num: 75724
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.676-47C>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.37-47C>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.583-47C>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+1811C>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.385-277C>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*444-277C>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+1811C>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.676-47C>G
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17771
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13658
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5534
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4332
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

11-59562801-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59562801
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59562801
    reference: chr 11
allele count: 1
allele frequency: 1.311372219890894e-5
allele num: 76256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.676-44A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.37-44A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.385-274A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+1814A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.676-44A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+1814A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.583-44A>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*444-274A>G
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5207
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15213
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2522
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6147
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

11-59562810-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59562810
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59562810
    reference: chr 11
allele count: 728
allele frequency: 9.371057848260948e-3
allele num: 77686
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.676-35G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+1823G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.676-35G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*444-265G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+1823G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.385-265G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.583-35G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.37-35G>A
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 1.75e1
  variant carriers: 201
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 2.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 18842
  bin: 7.5e0
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 9503
  bin: 2.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 16788
  bin: 1.25e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 9709
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4741
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3787
  bin: 9.75e1
  variant carriers: 702
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 5.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 7197
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 1.25e1
  variant carriers: 3
num of homozygotes: 7
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

11-59562810-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59562810
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59562810
    reference: chr 11
allele count: 1
allele frequency: 1.287233220914965e-5
allele num: 77686
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*444-265G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.385-265G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.37-35G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+1823G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.676-35G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.583-35G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.676-35G>T
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+1823G>T
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16788
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18842
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9709
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4741
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-59562815-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59562815
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59562815
    reference: chr 11
allele count: 3
allele frequency: 3.80411351474728e-5
allele num: 78862
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.676-30C>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.385-260C>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*444-260C>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.676-30C>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.583-30C>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+1828C>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+1828C>G
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.37-30C>G
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12611
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13136
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18243
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3979
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

11-59562816-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59562816
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59562816
    reference: chr 11
allele count: 1
allele frequency: 1.262721923378034e-5
allele num: 79194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.385-259T>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.676-29T>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+1829T>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+1829T>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.583-29T>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.37-29T>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*444-259T>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.676-29T>A
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

11-59562816-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59562816
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59562816
    reference: chr 11
allele count: 1
allele frequency: 1.262721923378034e-5
allele num: 79194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.385-259T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.676-29T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.676-29T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*444-259T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.37-29T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+1829T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+1829T>C
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.583-29T>C
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6552
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

11-59562819-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59562819
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 59562819
    reference: chr 11
allele count: 1
allele frequency: 1.252410890965108e-5
allele num: 79846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000434836
  ensembl transcript: ENST00000530221
  gene symbol: STX3
  hgvsc: ENST00000530221.1:c.37-26G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000441649
  ensembl transcript: ENST00000535361
  gene symbol: STX3
  hgvsc: ENST00000535361.1:c.675+1832G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000431386
  ensembl transcript: ENST00000528805
  gene symbol: STX3
  hgvsc: ENST00000528805.1:c.531+1832G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000433248
  ensembl transcript: ENST00000529177
  gene symbol: STX3
  hgvsc: ENST00000529177.1:c.676-26G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000300150
  ensembl transcript: ENST00000300150
  gene symbol: STX3
  hgvsc: ENST00000300150.7:c.583-26G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000393536
  ensembl transcript: ENST00000437946
  gene symbol: STX3
  hgvsc: ENST00000437946.2:c.385-256G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000436200
  ensembl transcript: ENST00000533637
  gene symbol: STX3
  hgvsc: ENST00000533637.1:c.*444-256G>A
  variant of: http://identifiers.org/hgnc/11438
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166900
  ensembl protein: ENSP00000338562
  ensembl transcript: ENST00000337979
  gene symbol: STX3
  hgvsc: ENST00000337979.4:c.676-26G>A
  variant of: http://identifiers.org/hgnc/11438
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14014
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14792
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3146
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4640
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18210
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

11-59562826-CAG-C
type: Variant
location: Region
allele count: 1
allele frequency: 1.208079636609645e-5
allele num: 82776
alternate allele: C
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: CAG

GenotypeQuality
all individuals: 281
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4685
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1197
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1854
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5482
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 516
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6226
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.491820306413918e-5
allele num: 15404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.71e0

VQSLOD
type: SiteQuality
SIO_000300: -6.229e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

FS
type: SiteQuality
SIO_000300: 4.169e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 1.633316e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

GenotypeQuality
all individuals: 1405
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34964
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5482
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.119095385737735e-5
allele num: 10966
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

DP
type: SiteQuality
SIO_000300: 1.633316e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 4.169e0

VQSLOD
type: SiteQuality
SIO_000300: -6.229e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 1824
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2036
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.562011871290222e-5
allele num: 64020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15392
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

FS
type: SiteQuality
SIO_000300: 7.181e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 9.02e0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.016e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.552e0

DP
type: SiteQuality
SIO_000300: 1.610905e6

GenotypeQuality
all individuals: 136
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1814
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
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GenotypeQuality
all individuals: 1321
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4570
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5484
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 31255
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10838
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.598752598752599e-4
allele num: 15392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.600551e6

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.248e0

QD
type: SiteQuality
SIO_000300: 1.111e1

VQSLOD
type: SiteQuality
SIO_000300: 7.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

GenotypeQuality
all individuals: 5652
bin: 9.75e1
variant carriers: 232

GenotypeQuality
all individuals: 698
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4473
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 521
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1781
bin: 7.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1698
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variant carriers: 1

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 29164
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variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 195
allele frequency: 1.944555245313123e-2
allele num: 10028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 4.715646515137225e-4
allele num: 63618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 9.295408068414204e-4
allele num: 10758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15350
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.584268e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.66e0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

FS
type: SiteQuality
SIO_000300: 5.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.377e1

GenotypeQuality
all individuals: 693
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3200
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
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variant carriers: 0

GenotypeQuality
all individuals: 25554
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variant carriers: 0

GenotypeQuality
all individuals: 2002
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variant carriers: 0

GenotypeQuality
all individuals: 6671
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variant carriers: 0

GenotypeQuality
all individuals: 1399
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variant carriers: 0

GenotypeQuality
all individuals: 2210
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variant carriers: 0

GenotypeQuality
all individuals: 4330
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variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.313729204154434e-5
allele num: 63354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15340
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.555702e6

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.833e0

GenotypeQuality
all individuals: 1392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 7.5e0
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GenotypeQuality
all individuals: 2422
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variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
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variant carriers: 0

GenotypeQuality
all individuals: 1749
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variant carriers: 0

GenotypeQuality
all individuals: 859
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variant carriers: 0

GenotypeQuality
all individuals: 7019
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variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.582278481012658e-5
allele num: 63200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6132
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 1.343e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.479e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.42e-1

FS
type: SiteQuality
SIO_000300: 4.029e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.546465e6

GenotypeQuality
all individuals: 24546
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5477
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variant carriers: 2

GenotypeQuality
all individuals: 234
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GenotypeQuality
all individuals: 843
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GenotypeQuality
all individuals: 4203
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variant carriers: 0

GenotypeQuality
all individuals: 7193
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variant carriers: 0

GenotypeQuality
all individuals: 688
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variant carriers: 0

GenotypeQuality
all individuals: 1976
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variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.166460846711631e-5
allele num: 63162
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

QD
type: SiteQuality
SIO_000300: 1.134e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 1.54333e6

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

FS
type: SiteQuality
SIO_000300: 1.684e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1004
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4057
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GenotypeQuality
all individuals: 215
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GenotypeQuality
all individuals: 21842
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variant carriers: 0

GenotypeQuality
all individuals: 858
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variant carriers: 0

GenotypeQuality
all individuals: 1731
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2970
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5475
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 627
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.593016216905088e-5
allele num: 62774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15290
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

QD
type: SiteQuality
SIO_000300: 1.406e1

MQRankSum
type: SiteQuality
SIO_000300: -9.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

DP
type: SiteQuality
SIO_000300: 1.523124e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

GenotypeQuality
all individuals: 7786
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
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variant carriers: 0

GenotypeQuality
all individuals: 3033
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21791
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4299
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.594184415253157e-5
allele num: 62728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15274
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

VQSLOD
type: SiteQuality
SIO_000300: 8.3e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 4.28e-1

QD
type: SiteQuality
SIO_000300: 1.662e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 1.228e0

DP
type: SiteQuality
SIO_000300: 1.520198e6

GenotypeQuality
all individuals: 379
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8062
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5474
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1711
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3228
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3453
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.595252528475258e-5
allele num: 62686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10438
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.083e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 1.505737e6

FS
type: SiteQuality
SIO_000300: 1.703e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.169999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.811e0

GenotypeQuality
all individuals: 5279
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3843
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5473
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1388
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.551362683438155e-5
allele num: 15264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.486367e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.509e0

QD
type: SiteQuality
SIO_000300: 1.364e1

GenotypeQuality
all individuals: 5478
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1943
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15077
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1995
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4539
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1512
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6024
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61890
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.930817610062893e-4
allele num: 10176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

FS
type: SiteQuality
SIO_000300: 8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

DP
type: SiteQuality
SIO_000300: 1.47739e6

QD
type: SiteQuality
SIO_000300: 1.356e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

GenotypeQuality
all individuals: 3615
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1244
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 4540
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2344
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3744
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1374
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 675
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 15328
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1667
bin: 7.25e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 31
allele frequency: 5.140961857379768e-3
allele num: 6030
num of homozygotes: 0

African
type: Population
allele count: 295
allele frequency: 2.988249594813614e-2
allele num: 9872
num of homozygotes: 4

Latino
type: Population
allele count: 30
allele frequency: 2.949272512780181e-3
allele num: 10172
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.658536585365854e-3
allele num: 820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 260
allele frequency: 4.199102038179528e-3
allele num: 61918
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.936491274111009e-4
allele num: 15242
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.27e0

QD
type: SiteQuality
SIO_000300: 1.411e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

DP
type: SiteQuality
SIO_000300: 1.479182e6

GenotypeQuality
all individuals: 596
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2329
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5513
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2305
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7387
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4951
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.311303435615001e-4
allele num: 15252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.204e1

FS
type: SiteQuality
SIO_000300: 2.389e0

VQSLOD
type: SiteQuality
SIO_000300: 2.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

DP
type: SiteQuality
SIO_000300: 1.476067e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.56e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

GenotypeQuality
all individuals: 236
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3310
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5477
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5506
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2355
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.556517178075007e-5
allele num: 15252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.008e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.68e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-1

FS
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 1.480707e6

VQSLOD
type: SiteQuality
SIO_000300: 5.47e-1

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5130
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4490
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3752
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.891287586738628e-4
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.2381e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.149e0

DP
type: SiteQuality
SIO_000300: 2.321513e6

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

QD
type: SiteQuality
SIO_000300: 8.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.387e0

GenotypeQuality
all individuals: 22732
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1245
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8687
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5191
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4471
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.496e0

FS
type: SiteQuality
SIO_000300: 3.364e0

QD
type: SiteQuality
SIO_000300: 1.29e1

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

DP
type: SiteQuality
SIO_000300: 2.315851e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.69e-1

GenotypeQuality
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4489
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22730
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9549
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.641342074816814e-5
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.319758e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.433e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e0

QD
type: SiteQuality
SIO_000300: 1.589e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.32e-1

GenotypeQuality
all individuals: 726
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2934
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9526
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4368
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5196
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4472
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

QD
type: SiteQuality
SIO_000300: 1.185e1

MQ
type: SiteQuality
SIO_000300: 5.927e1

DP
type: SiteQuality
SIO_000300: 2.320355e6

VQSLOD
type: SiteQuality
SIO_000300: -1.033e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

FS
type: SiteQuality
SIO_000300: 6.035e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.552e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22740
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15476
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66186
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.719e1

FS
type: SiteQuality
SIO_000300: 1.202e0

InbreedingCoeff
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ClippingRankSum
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SIO_000300: -2.3e-1

ReadPosRankSum
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.2e-1

DP
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SIO_000300: 2.324647e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.123e0

QD
type: SiteQuality
SIO_000300: 6.34e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15392
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66116
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

VQSLOD
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 6.069e1

ClippingRankSum
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SIO_000300: -1.688e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.325616e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50961625554784e-5
allele num: 66242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.949e1

QD
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MQRankSum
type: SiteQuality
SIO_000300: -1.115e0

BaseQRankSum
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SIO_000300: -3.707e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 7.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.215e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e0

DP
type: SiteQuality
SIO_000300: 2.335752e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66350
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.132e1

FS
type: SiteQuality
SIO_000300: 3.807e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.86e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

DP
type: SiteQuality
SIO_000300: 2.346628e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506069459923492e-5
allele num: 66398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

FS
type: SiteQuality
SIO_000300: 1.703e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.13e1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-2

DP
type: SiteQuality
SIO_000300: 2.351773e6

VQSLOD
type: SiteQuality
SIO_000300: 8.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15974
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.35379e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.059e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.429e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011141222523336e-5
allele num: 66420
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15974
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.77e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

ReadPosRankSum
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.919e1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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BaseQRankSum
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MQRankSum
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FS
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999940001199976e-5
allele num: 66668
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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ClippingRankSum
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InbreedingCoeff
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DP
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SIO_000300: 2.370412e6

BaseQRankSum
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FS
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QD
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.26e-1

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16414
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 9
allele frequency: 1.349973000539989e-4
allele num: 66668
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

InbreedingCoeff
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FS
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
SIO_000300: 1.262e1

DP
type: SiteQuality
SIO_000300: 2.370412e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

Other
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allele count: 0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.155e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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BaseQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499700059988002e-5
allele num: 66680
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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QD
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

Other
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South Asian
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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BaseQRankSum
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QD
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DP
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VQSLOD
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InbreedingCoeff
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MQ
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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East Asian
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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allele frequency: 6.000240009600384e-5
allele num: 66664
num of homozygotes: 0

BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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VQSLOD
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MQ
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 66664
num of homozygotes: 0

South Asian
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European (Finnish)
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num of homozygotes: 0

Latino
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Other
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East Asian
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African
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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SIO_000300: -5.620000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.171e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e-1

DP
type: SiteQuality
SIO_000300: 2.369968e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

QD
type: SiteQuality
SIO_000300: 1.61e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.622140050843541e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

DP
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SIO_000300: 2.369981e6

ReadPosRankSum
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SIO_000300: 1.47e0

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.255e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.536e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.000660145231951e-5
allele num: 66652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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FS
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SIO_000300: 3.281e0

VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 2.369674e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.404e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.916e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.91e-1

QD
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BaseQRankSum
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SIO_000300: -3.619e0

VQSLOD
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SIO_000300: -3.492e0

MQRankSum
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SIO_000300: 4.67e-1

FS
type: SiteQuality
SIO_000300: 2.1457e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.369219e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500870504892838e-5
allele num: 66628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.86e-2

QD
type: SiteQuality
SIO_000300: 9.199999999999999e0

DP
type: SiteQuality
SIO_000300: 2.368865e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: -8.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.648e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

QD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 1.06e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

African
type: Population
allele count: 46
allele frequency: 4.429892141756549e-3
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.23e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.13e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16108
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.89e1

DP
type: SiteQuality
SIO_000300: 2.361182e6

QD
type: SiteQuality
SIO_000300: 1.095e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006072265977274e-5
allele num: 66532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
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MQ
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SIO_000300: 5.89e1

MQRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -4.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
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num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.105975897627034e-4
allele num: 16098
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503126503126503e-5
allele num: 66528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.879e0

QD
type: SiteQuality
SIO_000300: 1.241e1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

DP
type: SiteQuality
SIO_000300: 2.360561e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2916
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4446
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2365
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505343971097396e-5
allele num: 66430
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.772e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

DP
type: SiteQuality
SIO_000300: 2.352629e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 3.228e0

QD
type: SiteQuality
SIO_000300: 1.326e1

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22698
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5287
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.67e-1

FS
type: SiteQuality
SIO_000300: 1.553e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.458e0

DP
type: SiteQuality
SIO_000300: 2.342147e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

QD
type: SiteQuality
SIO_000300: 7.98e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5075
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22699
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4392
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.588483331137172e-5
allele num: 15178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.650646593321752e-5
allele num: 10362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66158
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

FS
type: SiteQuality
SIO_000300: 5.32e0

MQRankSum
type: SiteQuality
SIO_000300: -3.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.096e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.11e-1

DP
type: SiteQuality
SIO_000300: 2.321727e6

QD
type: SiteQuality
SIO_000300: 1.343e1

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
all individuals: 5030
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
all individuals: 2303
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
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variant carriers: 0

GenotypeQuality
all individuals: 90
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GenotypeQuality
all individuals: 3705
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variant carriers: 0

GenotypeQuality
all individuals: 2861
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GenotypeQuality
all individuals: 4378
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variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 2356
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66088
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.645401382243488e-5
allele num: 15048
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 3.925e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

VQSLOD
type: SiteQuality
SIO_000300: 8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.316154e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e-1

QD
type: SiteQuality
SIO_000300: 1.459e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.79e-1

GenotypeQuality
all individuals: 22692
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 113
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variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
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GenotypeQuality
all individuals: 2400
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variant carriers: 0

GenotypeQuality
all individuals: 155
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variant carriers: 0

GenotypeQuality
all individuals: 2853
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variant carriers: 0

GenotypeQuality
all individuals: 4335
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variant carriers: 0

GenotypeQuality
all individuals: 3706
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variant carriers: 0

GenotypeQuality
all individuals: 168
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variant carriers: 0

GenotypeQuality
all individuals: 9932
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variant carriers: 0

GenotypeQuality
all individuals: 4368
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14838
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515151515151515e-5
allele num: 66000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.047e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 2.310637e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

QD
type: SiteQuality
SIO_000300: 1.633e1

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

GenotypeQuality
all individuals: 2442
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4336
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
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GenotypeQuality
all individuals: 9852
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
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GenotypeQuality
all individuals: 4316
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.028375882014476e-5
allele num: 66042
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.313851e6

FS
type: SiteQuality
SIO_000300: 1.287e0

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

MQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.77e-1

QD
type: SiteQuality
SIO_000300: 1.22e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.54e-2

GenotypeQuality
all individuals: 2341
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4959
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
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GenotypeQuality
all individuals: 9852
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4336
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514187941007238e-5
allele num: 66042
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.77e-1

QD
type: SiteQuality
SIO_000300: 1.22e1

DP
type: SiteQuality
SIO_000300: 2.313851e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

FS
type: SiteQuality
SIO_000300: 1.287e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.54e-2

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 885
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 4316
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2442
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9852
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2830
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4336
bin: 7.75e1
variant carriers: 2

East Asian
type: Population
allele count: 218
allele frequency: 2.520814061054579e-2
allele num: 8648
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 302
allele frequency: 2.030661646046262e-2
allele num: 14872
num of homozygotes: 7

Latino
type: Population
allele count: 4
allele frequency: 3.463203463203463e-4
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.725538293813028e-4
allele num: 66042
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.895752895752896e-4
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.580357142857143e-3
allele num: 896
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

DP
type: SiteQuality
SIO_000300: 2.313851e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.54e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

QD
type: SiteQuality
SIO_000300: 1.22e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.77e-1

FS
type: SiteQuality
SIO_000300: 1.287e0

GenotypeQuality
all individuals: 236
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4347
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
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variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2826
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9134
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2352
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65946
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

FS
type: SiteQuality
SIO_000300: 5.881e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.506e0

QD
type: SiteQuality
SIO_000300: 1.447e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

DP
type: SiteQuality
SIO_000300: 2.296342e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 863
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22598
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14514
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 2.296342e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.506e0

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

FS
type: SiteQuality
SIO_000300: 5.881e0

QD
type: SiteQuality
SIO_000300: 1.447e1

GenotypeQuality
all individuals: 9094
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 14

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4884
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2816
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731301939058172e-4
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14478
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.656237929702588e-5
allele num: 10356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.668638694214375e-4
allele num: 65922
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

FS
type: SiteQuality
SIO_000300: 3.151e0

DP
type: SiteQuality
SIO_000300: 2.295474e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e-1

QD
type: SiteQuality
SIO_000300: 1.15e1

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22593
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8635
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GenotypeQuality
all individuals: 846
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517450682852807e-5
allele num: 65900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.038e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

QD
type: SiteQuality
SIO_000300: 1.177e1

FS
type: SiteQuality
SIO_000300: 4.898e0

MQRankSum
type: SiteQuality
SIO_000300: -1.668e0

VQSLOD
type: SiteQuality
SIO_000300: -6.814e-1

DP
type: SiteQuality
SIO_000300: 2.291204e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.719e0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2759
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2318
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variant carriers: 0

GenotypeQuality
all individuals: 466
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variant carriers: 0

GenotypeQuality
all individuals: 312
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4301
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variant carriers: 0

GenotypeQuality
all individuals: 8062
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22595
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.080690766471071e-5
allele num: 65782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.199e1

VQSLOD
type: SiteQuality
SIO_000300: 5.639999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.83e-1

FS
type: SiteQuality
SIO_000300: 5.395e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.891e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

DP
type: SiteQuality
SIO_000300: 2.282168e6

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 899
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variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
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variant carriers: 0

GenotypeQuality
all individuals: 1351
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variant carriers: 0

GenotypeQuality
all individuals: 2723
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variant carriers: 0

GenotypeQuality
all individuals: 280
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variant carriers: 0

GenotypeQuality
all individuals: 3693
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variant carriers: 0

GenotypeQuality
all individuals: 4253
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variant carriers: 0

GenotypeQuality
all individuals: 4277
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65632
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.63e-1

DP
type: SiteQuality
SIO_000300: 2.273145e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.191e0

MQ
type: SiteQuality
SIO_000300: 6.041e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.95e-1

QD
type: SiteQuality
SIO_000300: 1.495e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 5.138e0

GenotypeQuality
all individuals: 1774
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4724
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5190
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variant carriers: 0

GenotypeQuality
all individuals: 3164
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2547
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 316
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variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.646436132674665e-4
allele num: 11336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5462
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

QD
type: SiteQuality
SIO_000300: 7.26e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.99e-1

DP
type: SiteQuality
SIO_000300: 9.61956e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

GenotypeQuality
all individuals: 3070
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3161
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1586
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GenotypeQuality
all individuals: 221
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GenotypeQuality
all individuals: 4929
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variant carriers: 0

GenotypeQuality
all individuals: 2557
bin: 7.5e0
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GenotypeQuality
all individuals: 601
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.561036528254761e-4
allele num: 6406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5458
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.75561797752809e-4
allele num: 5696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.679999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.49e0

DP
type: SiteQuality
SIO_000300: 9.63651e5

GenotypeQuality
all individuals: 1017
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3164
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2979
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5478
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
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variant carriers: 0

GenotypeQuality
all individuals: 1937
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variant carriers: 0

GenotypeQuality
all individuals: 222
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GenotypeQuality
all individuals: 2783
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7703
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2183
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.350839249612111e-5
allele num: 42538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

VQSLOD
type: SiteQuality
SIO_000300: -6.176e-1

QD
type: SiteQuality
SIO_000300: 1.739e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

DP
type: SiteQuality
SIO_000300: 9.72006e5

GenotypeQuality
all individuals: 4966
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2083
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 1508
bin: 4.75e1
variant carriers: 9

GenotypeQuality
all individuals: 400
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17242
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1577
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 345
bin: 9.25e1
variant carriers: 14

GenotypeQuality
all individuals: 1596
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 557
bin: 8.25e1
variant carriers: 25

GenotypeQuality
all individuals: 545
bin: 5.25e1
variant carriers: 14

GenotypeQuality
all individuals: 267
bin: 8.75e1
variant carriers: 29

GenotypeQuality
all individuals: 717
bin: 7.75e1
variant carriers: 13

Latino
type: Population
allele count: 94
allele frequency: 1.592680447305998e-2
allele num: 5902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 2.8328611898017e-3
allele num: 4236
num of homozygotes: 0

South Asian
type: Population
allele count: 55
allele frequency: 4.774305555555556e-3
allele num: 11520
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5602
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.680929095354523e-3
allele num: 6544
num of homozygotes: 0

Other
type: Population
allele count: 9
allele frequency: 1.595744680851064e-2
allele num: 564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 547
allele frequency: 1.262754513135417e-2
allele num: 43318
num of homozygotes: 5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.58e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 8.48e-1

DP
type: SiteQuality
SIO_000300: 1.017008e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

QD
type: SiteQuality
SIO_000300: 1.4e1

GenotypeQuality
all individuals: 267
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4966
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7197
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3787
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17242
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.308509164781384e-5
allele num: 43318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.017008e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

FS
type: SiteQuality
SIO_000300: 8.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.58e-2

QD
type: SiteQuality
SIO_000300: 1.4e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

GenotypeQuality
all individuals: 6649
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4862
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3148
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 814
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.54297655824096e-5
allele num: 44024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5674
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.625150940141452e-5
allele num: 11594
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.887e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

QD
type: SiteQuality
SIO_000300: 3.019e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

DP
type: SiteQuality
SIO_000300: 1.046809e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6552
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4827
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3861
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5680
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.602890571231934e-5
allele num: 11624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6650
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.052e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

FS
type: SiteQuality
SIO_000300: 1.367e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.85e0

VQSLOD
type: SiteQuality
SIO_000300: 3.53e-1

DP
type: SiteQuality
SIO_000300: 1.051154e6

GenotypeQuality
all individuals: 336
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18268
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3861
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4827
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.260193472561251e-5
allele num: 44244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4360
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

DP
type: SiteQuality
SIO_000300: 1.051154e6

MQ
type: SiteQuality
SIO_000300: 5.983e1

FS
type: SiteQuality
SIO_000300: 1.367e0

QD
type: SiteQuality
SIO_000300: 1.052e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

VQSLOD
type: SiteQuality
SIO_000300: 3.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.85e0

GenotypeQuality
all individuals: 1473
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6149
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3495
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.240846143503787e-5
allele num: 44626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.579e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

VQSLOD
type: SiteQuality
SIO_000300: -6.141e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.06e-1

DP
type: SiteQuality
SIO_000300: 1.069327e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.862e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

FS
type: SiteQuality
SIO_000300: 1.615e0

MQ
type: SiteQuality
SIO_000300: 6.0e1