15-41961282-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961282
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961282
    reference: chr 15
allele count: 1
allele frequency: 8.285553309249991e-6
allele num: 120692
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26991A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.190A>G
  hgvsp: ENSP00000457151.1:p.Ile64Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.190A>G
  hgvsp: ENSP00000455155.1:p.Ile64Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.190A>G
  hgvsp: ENSP00000374586.4:p.Ile64Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.190A>G
  hgvsp: ENSP00000457035.1:p.Ile64Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.190A>G
  hgvsp: ENSP00000219905.7:p.Ile64Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.190A>G
  hgvsp: ENSP00000442467.1:p.Ile64Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.190A>G
  hgvsp: ENSP00000456141.1:p.Ile64Val
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile64Val
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD

15-41961285-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961285
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961285
    reference: chr 15
allele count: 1
allele frequency: 8.285004142502071e-6
allele num: 120700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.193T>A
  hgvsp: ENSP00000442467.1:p.Cys65Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.193T>A
  hgvsp: ENSP00000455155.1:p.Cys65Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.193T>A
  hgvsp: ENSP00000457151.1:p.Cys65Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.193T>A
  hgvsp: ENSP00000219905.7:p.Cys65Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.193T>A
  hgvsp: ENSP00000374586.4:p.Cys65Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.193T>A
  hgvsp: ENSP00000456141.1:p.Cys65Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.193T>A
  hgvsp: ENSP00000457035.1:p.Cys65Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26988T>A
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys65Ser
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-41961299-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961299
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961299
    reference: chr 15
allele count: 16
allele frequency: 1.325271266462354e-4
allele num: 120730
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.207T>G
  hgvsp: ENSP00000456141.1:p.Asp69Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.207T>G
  hgvsp: ENSP00000457035.1:p.Asp69Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.207T>G
  hgvsp: ENSP00000455155.1:p.Asp69Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.207T>G
  hgvsp: ENSP00000442467.1:p.Asp69Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26974T>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.207T>G
  hgvsp: ENSP00000457151.1:p.Asp69Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.207T>G
  hgvsp: ENSP00000219905.7:p.Asp69Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.207T>G
  hgvsp: ENSP00000374586.4:p.Asp69Glu
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp69Glu
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

15-41961303-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961303
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961303
    reference: chr 15
allele count: 2
allele frequency: 1.656561640658649e-5
allele num: 120732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.211A>G
  hgvsp: ENSP00000457035.1:p.Thr71Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.211A>G
  hgvsp: ENSP00000442467.1:p.Thr71Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.211A>G
  hgvsp: ENSP00000457151.1:p.Thr71Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.211A>G
  hgvsp: ENSP00000374586.4:p.Thr71Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26970A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.211A>G
  hgvsp: ENSP00000456141.1:p.Thr71Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.211A>G
  hgvsp: ENSP00000455155.1:p.Thr71Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.211A>G
  hgvsp: ENSP00000219905.7:p.Thr71Ala
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43564
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr71Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

15-41961311-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961311
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961311
    reference: chr 15
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.219T>G
  hgvsp: ENST00000545763.1:c.219T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26962T>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.219T>G
  hgvsp: ENST00000566586.1:c.219T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.219T>G
  hgvsp: ENST00000563576.1:c.219T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.219T>G
  hgvsp: ENST00000570161.1:c.219T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.219T>G
  hgvsp: ENST00000219905.7:c.219T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.219T>G
  hgvsp: ENST00000566718.1:c.219T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.219T>G
  hgvsp: ENST00000389936.4:c.219T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly73Gly
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP

15-41961329-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961329
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961329
    reference: chr 15
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.237C>T
  hgvsp: ENST00000563576.1:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.237C>T
  hgvsp: ENST00000570161.1:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.237C>T
  hgvsp: ENST00000219905.7:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.237C>T
  hgvsp: ENST00000389936.4:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.237C>T
  hgvsp: ENST00000566586.1:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.237C>T
  hgvsp: ENST00000566718.1:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.237C>T
  hgvsp: ENST00000545763.1:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26944C>T
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu79Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

15-41961341-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961341
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961341
    reference: chr 15
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.249T>G
  hgvsp: ENSP00000374586.4:p.Ser83Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.249T>G
  hgvsp: ENSP00000219905.7:p.Ser83Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.249T>G
  hgvsp: ENSP00000457151.1:p.Ser83Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26932T>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.249T>G
  hgvsp: ENSP00000456141.1:p.Ser83Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.249T>G
  hgvsp: ENSP00000455155.1:p.Ser83Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.249T>G
  hgvsp: ENSP00000457035.1:p.Ser83Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.249T>G
  hgvsp: ENSP00000442467.1:p.Ser83Arg
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser83Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

15-41961342-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961342
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961342
    reference: chr 15
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.250A>G
  hgvsp: ENSP00000456141.1:p.Met84Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.250A>G
  hgvsp: ENSP00000457035.1:p.Met84Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26931A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.250A>G
  hgvsp: ENSP00000219905.7:p.Met84Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.250A>G
  hgvsp: ENSP00000457151.1:p.Met84Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.250A>G
  hgvsp: ENSP00000455155.1:p.Met84Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.250A>G
  hgvsp: ENSP00000442467.1:p.Met84Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.250A>G
  hgvsp: ENSP00000374586.4:p.Met84Val
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8852
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met84Val
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

15-41961358-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961358
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961358
    reference: chr 15
allele count: 4
allele frequency: 3.312245371137094e-5
allele num: 120764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.266A>G
  hgvsp: ENSP00000457035.1:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26915A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.266A>G
  hgvsp: ENSP00000374586.4:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.266A>G
  hgvsp: ENSP00000442467.1:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.266A>G
  hgvsp: ENSP00000456141.1:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.266A>G
  hgvsp: ENSP00000219905.7:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.266A>G
  hgvsp: ENSP00000457151.1:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.266A>G
  hgvsp: ENSP00000455155.1:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr89Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP

15-41961360-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961360
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961360
    reference: chr 15
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.268C>T
  hgvsp: ENSP00000219905.7:p.His90Tyr
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.268C>T
  hgvsp: ENSP00000442467.1:p.His90Tyr
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.268C>T
  hgvsp: ENSP00000374586.4:p.His90Tyr
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.268C>T
  hgvsp: ENSP00000455155.1:p.His90Tyr
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.268C>T
  hgvsp: ENSP00000457151.1:p.His90Tyr
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.268C>T
  hgvsp: ENSP00000456141.1:p.His90Tyr
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.268C>T
  hgvsp: ENSP00000457035.1:p.His90Tyr
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26913C>T
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His90Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-41961399-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961399
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961399
    reference: chr 15
allele count: 1
allele frequency: 8.280064915708939e-6
allele num: 120772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.307C>T
  hgvsp: ENSP00000457151.1:p.Arg103Cys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.307C>T
  hgvsp: ENSP00000219905.7:p.Arg103Cys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.307C>T
  hgvsp: ENSP00000457035.1:p.Arg103Cys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.307C>T
  hgvsp: ENSP00000456141.1:p.Arg103Cys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.307C>T
  hgvsp: ENSP00000455155.1:p.Arg103Cys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26874C>T
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.307C>T
  hgvsp: ENSP00000442467.1:p.Arg103Cys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.307C>T
  hgvsp: ENSP00000374586.4:p.Arg103Cys
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg103Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

15-41961401-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961401
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961401
    reference: chr 15
allele count: 1
allele frequency: 8.280064915708939e-6
allele num: 120772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.309C>T
  hgvsp: ENST00000545763.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.309C>T
  hgvsp: ENST00000566718.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.309C>T
  hgvsp: ENST00000570161.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.309C>T
  hgvsp: ENST00000563576.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26872C>T
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.309C>T
  hgvsp: ENST00000389936.4:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.309C>T
  hgvsp: ENST00000219905.7:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.309C>T
  hgvsp: ENST00000566586.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8850
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg103Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

15-41961473-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961473
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961473
    reference: chr 15
allele count: 2
allele frequency: 1.656067832538421e-5
allele num: 120768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.381A>G
  hgvsp: ENSP00000457151.1:p.Ile127Met
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.381A>G
  hgvsp: ENSP00000456141.1:p.Ile127Met
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26800A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.381A>G
  hgvsp: ENSP00000442467.1:p.Ile127Met
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.381A>G
  hgvsp: ENSP00000457035.1:p.Ile127Met
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.381A>G
  hgvsp: ENSP00000219905.7:p.Ile127Met
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.381A>G
  hgvsp: ENSP00000455155.1:p.Ile127Met
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.381A>G
  hgvsp: ENSP00000374586.4:p.Ile127Met
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile127Met
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

15-41961488-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961488
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961488
    reference: chr 15
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26785C>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.396C>G
  hgvsp: ENSP00000374586.4:p.Asn132Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.396C>G
  hgvsp: ENSP00000219905.7:p.Asn132Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.396C>G
  hgvsp: ENSP00000456141.1:p.Asn132Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.396C>G
  hgvsp: ENSP00000457151.1:p.Asn132Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.396C>G
  hgvsp: ENSP00000455155.1:p.Asn132Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.396C>G
  hgvsp: ENSP00000442467.1:p.Asn132Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.396C>G
  hgvsp: ENSP00000457035.1:p.Asn132Lys
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8848
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn132Lys
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

15-41961493-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961493
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961493
    reference: chr 15
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.401G>A
  hgvsp: ENSP00000456141.1:p.Arg134His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.401G>A
  hgvsp: ENSP00000455155.1:p.Arg134His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.401G>A
  hgvsp: ENSP00000442467.1:p.Arg134His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.401G>A
  hgvsp: ENSP00000457035.1:p.Arg134His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.401G>A
  hgvsp: ENSP00000374586.4:p.Arg134His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.401G>A
  hgvsp: ENSP00000457151.1:p.Arg134His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.401G>A
  hgvsp: ENSP00000219905.7:p.Arg134His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26780G>A
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg134His
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP

15-41961494-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961494
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961494
    reference: chr 15
allele count: 3
allele frequency: 2.484101748807631e-5
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.402T>A
  hgvsp: ENST00000566718.1:c.402T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.402T>A
  hgvsp: ENST00000219905.7:c.402T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.402T>A
  hgvsp: ENST00000566586.1:c.402T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.402T>A
  hgvsp: ENST00000570161.1:c.402T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26779T>A
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.402T>A
  hgvsp: ENST00000389936.4:c.402T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.402T>A
  hgvsp: ENST00000545763.1:c.402T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.402T>A
  hgvsp: ENST00000563576.1:c.402T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg134Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

15-41961497-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961497
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961497
    reference: chr 15
allele count: 3
allele frequency: 2.484101748807631e-5
allele num: 120768
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.405T>C
  hgvsp: ENST00000219905.7:c.405T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26776T>C
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.405T>C
  hgvsp: ENST00000570161.1:c.405T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.405T>C
  hgvsp: ENST00000563576.1:c.405T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.405T>C
  hgvsp: ENST00000566586.1:c.405T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.405T>C
  hgvsp: ENST00000545763.1:c.405T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.405T>C
  hgvsp: ENST00000389936.4:c.405T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.405T>C
  hgvsp: ENST00000566718.1:c.405T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr135Tyr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

15-41961500-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961500
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961500
    reference: chr 15
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26773G>C
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.408G>C
  hgvsp: ENSP00000219905.7:p.Lys136Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.408G>C
  hgvsp: ENSP00000374586.4:p.Lys136Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.408G>C
  hgvsp: ENSP00000457151.1:p.Lys136Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.408G>C
  hgvsp: ENSP00000442467.1:p.Lys136Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.408G>C
  hgvsp: ENSP00000456141.1:p.Lys136Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.408G>C
  hgvsp: ENSP00000457035.1:p.Lys136Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.408G>C
  hgvsp: ENSP00000455155.1:p.Lys136Asn
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys136Asn
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

15-41961511-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961511
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961511
    reference: chr 15
allele count: 13
allele frequency: 1.076444091149973e-4
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.419G>A
  hgvsp: ENSP00000457151.1:p.Arg140His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.419G>A
  hgvsp: ENSP00000442467.1:p.Arg140His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.419G>A
  hgvsp: ENSP00000219905.7:p.Arg140His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.419G>A
  hgvsp: ENSP00000456141.1:p.Arg140His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.419G>A
  hgvsp: ENSP00000374586.4:p.Arg140His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26762G>A
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.419G>A
  hgvsp: ENSP00000457035.1:p.Arg140His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.419G>A
  hgvsp: ENSP00000455155.1:p.Arg140His
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg140His
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

15-41961519-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961519
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961519
    reference: chr 15
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.427G>A
  hgvsp: ENSP00000219905.7:p.Glu143Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.427G>A
  hgvsp: ENSP00000456141.1:p.Glu143Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.427G>A
  hgvsp: ENSP00000457151.1:p.Glu143Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26754G>A
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.427G>A
  hgvsp: ENSP00000374586.4:p.Glu143Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.427G>A
  hgvsp: ENSP00000442467.1:p.Glu143Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.427G>A
  hgvsp: ENSP00000457035.1:p.Glu143Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.427G>A
  hgvsp: ENSP00000455155.1:p.Glu143Lys
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu143Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-41961527-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961527
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961527
    reference: chr 15
allele count: 20
allele frequency: 1.65604040738594e-4
allele num: 120770
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26746T>C
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.435T>C
  hgvsp: ENST00000563576.1:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.435T>C
  hgvsp: ENST00000570161.1:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.435T>C
  hgvsp: ENST00000566586.1:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.435T>C
  hgvsp: ENST00000566718.1:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.435T>C
  hgvsp: ENST00000219905.7:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.435T>C
  hgvsp: ENST00000545763.1:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.435T>C
  hgvsp: ENST00000389936.4:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8852
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser145Ser
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

15-41961539-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961539
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961539
    reference: chr 15
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26734A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.447A>G
  hgvsp: ENST00000566718.1:c.447A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.447A>G
  hgvsp: ENST00000570161.1:c.447A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.447A>G
  hgvsp: ENST00000566586.1:c.447A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.447A>G
  hgvsp: ENST00000219905.7:c.447A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.447A>G
  hgvsp: ENST00000545763.1:c.447A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.447A>G
  hgvsp: ENST00000389936.4:c.447A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.447A>G
  hgvsp: ENST00000563576.1:c.447A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43852
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu149Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

15-41961572-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961572
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961572
    reference: chr 15
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.480A>G
  hgvsp: ENST00000389936.4:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.480A>G
  hgvsp: ENST00000570161.1:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.480A>G
  hgvsp: ENST00000219905.7:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.480A>G
  hgvsp: ENST00000566718.1:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.480A>G
  hgvsp: ENST00000566586.1:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26701A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.480A>G
  hgvsp: ENST00000545763.1:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.480A>G
  hgvsp: ENST00000563576.1:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro160Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

15-41961585-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961585
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961585
    reference: chr 15
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.493A>G
  hgvsp: ENSP00000457151.1:p.Thr165Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.493A>G
  hgvsp: ENSP00000374586.4:p.Thr165Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.493A>G
  hgvsp: ENSP00000457035.1:p.Thr165Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26688A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.493A>G
  hgvsp: ENSP00000219905.7:p.Thr165Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.493A>G
  hgvsp: ENSP00000456141.1:p.Thr165Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.493A>G
  hgvsp: ENSP00000455155.1:p.Thr165Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.493A>G
  hgvsp: ENSP00000442467.1:p.Thr165Ala
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43853
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr165Ala
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

15-41961591-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961591
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961591
    reference: chr 15
allele count: 2
allele frequency: 1.65604040738594e-5
allele num: 120770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.499C>T
  hgvsp: ENSP00000457035.1:p.His167Tyr
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.499C>T
  hgvsp: ENSP00000456141.1:p.His167Tyr
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.499C>T
  hgvsp: ENSP00000219905.7:p.His167Tyr
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26682C>T
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.499C>T
  hgvsp: ENSP00000374586.4:p.His167Tyr
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.499C>T
  hgvsp: ENSP00000457151.1:p.His167Tyr
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.499C>T
  hgvsp: ENSP00000442467.1:p.His167Tyr
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.499C>T
  hgvsp: ENSP00000455155.1:p.His167Tyr
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32283
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8848
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His167Tyr
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

15-41961592-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961592
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961592
    reference: chr 15
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26681A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.500A>G
  hgvsp: ENSP00000456141.1:p.His167Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.500A>G
  hgvsp: ENSP00000442467.1:p.His167Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.500A>G
  hgvsp: ENSP00000374586.4:p.His167Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.500A>G
  hgvsp: ENSP00000457035.1:p.His167Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.500A>G
  hgvsp: ENSP00000455155.1:p.His167Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.500A>G
  hgvsp: ENSP00000457151.1:p.His167Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.500A>G
  hgvsp: ENSP00000219905.7:p.His167Arg
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His167Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-41961604-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961604
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961604
    reference: chr 15
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.512A>G
  hgvsp: ENSP00000219905.7:p.His171Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.512A>G
  hgvsp: ENSP00000455155.1:p.His171Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.512A>G
  hgvsp: ENSP00000374586.4:p.His171Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.512A>G
  hgvsp: ENSP00000456141.1:p.His171Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.512A>G
  hgvsp: ENSP00000457035.1:p.His171Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.512A>G
  hgvsp: ENSP00000442467.1:p.His171Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.512A>G
  hgvsp: ENSP00000457151.1:p.His171Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26669A>G
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His171Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

15-41961614-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961614
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961614
    reference: chr 15
allele count: 5
allele frequency: 4.140169581346052e-5
allele num: 120768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.522A>G
  hgvsp: ENST00000545763.1:c.522A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.522A>G
  hgvsp: ENST00000389936.4:c.522A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26659A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.522A>G
  hgvsp: ENST00000566718.1:c.522A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.522A>G
  hgvsp: ENST00000219905.7:c.522A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.522A>G
  hgvsp: ENST00000570161.1:c.522A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.522A>G
  hgvsp: ENST00000563576.1:c.522A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.522A>G
  hgvsp: ENST00000566586.1:c.522A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43848
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 8842
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val174Val
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS

15-41961617-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961617
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961617
    reference: chr 15
allele count: 2
allele frequency: 1.656067832538421e-5
allele num: 120768
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.525T>C
  hgvsp: ENST00000566718.1:c.525T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.525T>C
  hgvsp: ENST00000563576.1:c.525T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.525T>C
  hgvsp: ENST00000545763.1:c.525T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.525T>C
  hgvsp: ENST00000219905.7:c.525T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26656T>C
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.525T>C
  hgvsp: ENST00000570161.1:c.525T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.525T>C
  hgvsp: ENST00000566586.1:c.525T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.525T>C
  hgvsp: ENST00000389936.4:c.525T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43850
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser175Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

15-41961621-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961621
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961621
    reference: chr 15
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.529T>A
  hgvsp: ENSP00000457035.1:p.Tyr177Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.529T>A
  hgvsp: ENSP00000442467.1:p.Tyr177Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.529T>A
  hgvsp: ENSP00000457151.1:p.Tyr177Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.529T>A
  hgvsp: ENSP00000219905.7:p.Tyr177Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.529T>A
  hgvsp: ENSP00000374586.4:p.Tyr177Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.529T>A
  hgvsp: ENSP00000455155.1:p.Tyr177Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26652T>A
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.529T>A
  hgvsp: ENSP00000456141.1:p.Tyr177Asn
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr177Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

15-41961692-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961692
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961692
    reference: chr 15
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.600C>T
  hgvsp: ENST00000566586.1:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.600C>T
  hgvsp: ENST00000389936.4:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26581C>T
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.600C>T
  hgvsp: ENST00000219905.7:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.600C>T
  hgvsp: ENST00000545763.1:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.600C>T
  hgvsp: ENST00000570161.1:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.600C>T
  hgvsp: ENST00000563576.1:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.600C>T
  hgvsp: ENST00000566718.1:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr200Tyr
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

15-41961693-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961693
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961693
    reference: chr 15
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26580C>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.601C>G
  hgvsp: ENSP00000442467.1:p.Leu201Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.601C>G
  hgvsp: ENSP00000374586.4:p.Leu201Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.601C>G
  hgvsp: ENSP00000219905.7:p.Leu201Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.601C>G
  hgvsp: ENSP00000457151.1:p.Leu201Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.601C>G
  hgvsp: ENSP00000457035.1:p.Leu201Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.601C>G
  hgvsp: ENSP00000456141.1:p.Leu201Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.601C>G
  hgvsp: ENSP00000455155.1:p.Leu201Val
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43795
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu201Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD

15-41961695-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961695
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961695
    reference: chr 15
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.603G>A
  hgvsp: ENST00000545763.1:c.603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.603G>A
  hgvsp: ENST00000566586.1:c.603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.603G>A
  hgvsp: ENST00000563576.1:c.603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.603G>A
  hgvsp: ENST00000389936.4:c.603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26578G>A
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.603G>A
  hgvsp: ENST00000570161.1:c.603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.603G>A
  hgvsp: ENST00000566718.1:c.603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.603G>A
  hgvsp: ENST00000219905.7:c.603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15591
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8819
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu201Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

15-41961721-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961721
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961721
    reference: chr 15
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.629A>G
  hgvsp: ENSP00000374586.4:p.Glu210Gly
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.629A>G
  hgvsp: ENSP00000455155.1:p.Glu210Gly
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.629A>G
  hgvsp: ENSP00000456141.1:p.Glu210Gly
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.629A>G
  hgvsp: ENSP00000219905.7:p.Glu210Gly
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.629A>G
  hgvsp: ENSP00000442467.1:p.Glu210Gly
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.629A>G
  hgvsp: ENSP00000457035.1:p.Glu210Gly
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26552A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.629A>G
  hgvsp: ENSP00000457151.1:p.Glu210Gly
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43856
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8810
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu210Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/15-41961722-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961722
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961722
    reference: chr 15
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.630A>C
  hgvsp: ENSP00000219905.7:p.Glu210Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.630A>C
  hgvsp: ENSP00000456141.1:p.Glu210Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.630A>C
  hgvsp: ENSP00000374586.4:p.Glu210Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26551A>C
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.630A>C
  hgvsp: ENSP00000457151.1:p.Glu210Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.630A>C
  hgvsp: ENSP00000455155.1:p.Glu210Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.630A>C
  hgvsp: ENSP00000457035.1:p.Glu210Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.630A>C
  hgvsp: ENSP00000442467.1:p.Glu210Asp
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu210Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

15-41961723-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961723
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961723
    reference: chr 15
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.631A>G
  hgvsp: ENSP00000456141.1:p.Lys211Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.631A>G
  hgvsp: ENSP00000455155.1:p.Lys211Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.631A>G
  hgvsp: ENSP00000374586.4:p.Lys211Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.631A>G
  hgvsp: ENSP00000219905.7:p.Lys211Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26550A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.631A>G
  hgvsp: ENSP00000442467.1:p.Lys211Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.631A>G
  hgvsp: ENSP00000457035.1:p.Lys211Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.631A>G
  hgvsp: ENSP00000457151.1:p.Lys211Glu
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys211Glu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

15-41961729-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961729
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961729
    reference: chr 15
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.637G>A
  hgvsp: ENSP00000455155.1:p.Val213Met
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.637G>A
  hgvsp: ENSP00000457035.1:p.Val213Met
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.637G>A
  hgvsp: ENSP00000457151.1:p.Val213Met
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26544G>A
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.637G>A
  hgvsp: ENSP00000456141.1:p.Val213Met
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.637G>A
  hgvsp: ENSP00000219905.7:p.Val213Met
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.637G>A
  hgvsp: ENSP00000374586.4:p.Val213Met
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.637G>A
  hgvsp: ENSP00000442467.1:p.Val213Met
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15638
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val213Met
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

15-41961731-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961731
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961731
    reference: chr 15
allele count: 1
allele frequency: 8.281436332317477e-6
allele num: 120752
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.639G>C
  hgvsp: ENST00000219905.7:c.639G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.639G>C
  hgvsp: ENST00000570161.1:c.639G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.639G>C
  hgvsp: ENST00000545763.1:c.639G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.639G>C
  hgvsp: ENST00000389936.4:c.639G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.639G>C
  hgvsp: ENST00000566586.1:c.639G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26542G>C
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.639G>C
  hgvsp: ENST00000563576.1:c.639G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.639G>C
  hgvsp: ENST00000566718.1:c.639G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val213Val
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-41961736-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961736
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961736
    reference: chr 15
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.644T>G
  hgvsp: ENSP00000456141.1:p.Val215Gly
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.644T>G
  hgvsp: ENSP00000457151.1:p.Val215Gly
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.644T>G
  hgvsp: ENSP00000219905.7:p.Val215Gly
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.644T>G
  hgvsp: ENSP00000442467.1:p.Val215Gly
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26537T>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.644T>G
  hgvsp: ENSP00000455155.1:p.Val215Gly
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.644T>G
  hgvsp: ENSP00000457035.1:p.Val215Gly
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.644T>G
  hgvsp: ENSP00000374586.4:p.Val215Gly
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2326
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val215Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

15-41961742-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961742
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961742
    reference: chr 15
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.650A>G
  hgvsp: ENSP00000455155.1:p.Gln217Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.650A>G
  hgvsp: ENSP00000442467.1:p.Gln217Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.650A>G
  hgvsp: ENSP00000374586.4:p.Gln217Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.650A>G
  hgvsp: ENSP00000457151.1:p.Gln217Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.650A>G
  hgvsp: ENSP00000457035.1:p.Gln217Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.650A>G
  hgvsp: ENSP00000219905.7:p.Gln217Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.650A>G
  hgvsp: ENSP00000456141.1:p.Gln217Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26531A>G
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9211
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln217Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

15-41961754-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961754
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961754
    reference: chr 15
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.662C>G
  hgvsp: ENSP00000455155.1:p.Pro221Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.662C>G
  hgvsp: ENSP00000219905.7:p.Pro221Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.662C>G
  hgvsp: ENSP00000457151.1:p.Pro221Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.662C>G
  hgvsp: ENSP00000374586.4:p.Pro221Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.662C>G
  hgvsp: ENSP00000456141.1:p.Pro221Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.662C>G
  hgvsp: ENSP00000442467.1:p.Pro221Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.662C>G
  hgvsp: ENSP00000457035.1:p.Pro221Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26519C>G
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro221Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

15-41961757-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961757
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961757
    reference: chr 15
allele count: 1
allele frequency: 8.287338604080686e-6
allele num: 120666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.665G>A
  hgvsp: ENSP00000457151.1:p.Gly222Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.665G>A
  hgvsp: ENSP00000457035.1:p.Gly222Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.665G>A
  hgvsp: ENSP00000219905.7:p.Gly222Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.665G>A
  hgvsp: ENSP00000456141.1:p.Gly222Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26516G>A
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.665G>A
  hgvsp: ENSP00000374586.4:p.Gly222Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.665G>A
  hgvsp: ENSP00000455155.1:p.Gly222Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.665G>A
  hgvsp: ENSP00000442467.1:p.Gly222Asp
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly222Asp
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

15-41961763-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961763
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961763
    reference: chr 15
allele count: 1
allele frequency: 8.290774026663129e-6
allele num: 120616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.671A>G
  hgvsp: ENSP00000455155.1:p.His224Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.671A>G
  hgvsp: ENSP00000456141.1:p.His224Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.671A>G
  hgvsp: ENSP00000457035.1:p.His224Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.671A>G
  hgvsp: ENSP00000374586.4:p.His224Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.671A>G
  hgvsp: ENSP00000457151.1:p.His224Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.671A>G
  hgvsp: ENSP00000442467.1:p.His224Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.671A>G
  hgvsp: ENSP00000219905.7:p.His224Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26510A>G
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His224Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

15-41961771-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961771
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961771
    reference: chr 15
allele count: 1
allele frequency: 8.296689620841284e-6
allele num: 120530
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.679A>G
  hgvsp: ENSP00000457035.1:p.Thr227Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.679A>G
  hgvsp: ENSP00000442467.1:p.Thr227Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.679A>G
  hgvsp: ENSP00000219905.7:p.Thr227Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.679A>G
  hgvsp: ENSP00000374586.4:p.Thr227Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26502A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.679A>G
  hgvsp: ENSP00000457151.1:p.Thr227Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.679A>G
  hgvsp: ENSP00000456141.1:p.Thr227Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.679A>G
  hgvsp: ENSP00000455155.1:p.Thr227Ala
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr227Ala
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

15-41961773-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961773
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961773
    reference: chr 15
allele count: 1
allele frequency: 8.297928836962294e-6
allele num: 120512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.681C>T
  hgvsp: ENST00000566718.1:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.681C>T
  hgvsp: ENST00000566586.1:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.681C>T
  hgvsp: ENST00000545763.1:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.681C>T
  hgvsp: ENST00000219905.7:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.681C>T
  hgvsp: ENST00000570161.1:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.681C>T
  hgvsp: ENST00000389936.4:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26500C>T
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.681C>T
  hgvsp: ENST00000563576.1:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr227Thr
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

15-41961779-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961779
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961779
    reference: chr 15
allele count: 1
allele frequency: 8.301510874979247e-6
allele num: 120460
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.687A>G
  hgvsp: ENST00000219905.7:c.687A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.687A>G
  hgvsp: ENST00000570161.1:c.687A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.687A>G
  hgvsp: ENST00000545763.1:c.687A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.687A>G
  hgvsp: ENST00000566586.1:c.687A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26494A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.687A>G
  hgvsp: ENST00000566718.1:c.687A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.687A>G
  hgvsp: ENST00000389936.4:c.687A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.687A>G
  hgvsp: ENST00000563576.1:c.687A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43538
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8646
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro229Pro
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

15-41961791-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961791
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961791
    reference: chr 15
allele count: 1
allele frequency: 8.318221896887321e-6
allele num: 120218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.699C>T
  hgvsp: ENST00000570161.1:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26482C>T
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.699C>T
  hgvsp: ENST00000563576.1:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.699C>T
  hgvsp: ENST00000566586.1:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.699C>T
  hgvsp: ENST00000545763.1:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.699C>T
  hgvsp: ENST00000219905.7:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.699C>T
  hgvsp: ENST00000566718.1:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.699C>T
  hgvsp: ENST00000389936.4:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8498
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43111
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Phe233Phe
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP

15-41961800-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961800
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961800
    reference: chr 15
allele count: 1
allele frequency: 8.332083520805212e-6
allele num: 120018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.708A>G
  hgvsp: ENST00000566718.1:c.708A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.708A>G
  hgvsp: ENST00000570161.1:c.708A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.708A>G
  hgvsp: ENST00000545763.1:c.708A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.708A>G
  hgvsp: ENST00000219905.7:c.708A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.708A>G
  hgvsp: ENST00000389936.4:c.708A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.708A>G
  hgvsp: ENST00000563576.1:c.708A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.708A>G
  hgvsp: ENST00000566586.1:c.708A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26473A>G
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31124
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val236Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD

15-41961822-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961822
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961822
    reference: chr 15
allele count: 1
allele frequency: 8.372404554588077e-6
allele num: 119440
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.730A>G
  hgvsp: ENSP00000442467.1:p.Ile244Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.730A>G
  hgvsp: ENSP00000374586.4:p.Ile244Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.730A>G
  hgvsp: ENSP00000457035.1:p.Ile244Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.730A>G
  hgvsp: ENSP00000457151.1:p.Ile244Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26451A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.730A>G
  hgvsp: ENSP00000219905.7:p.Ile244Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.730A>G
  hgvsp: ENSP00000456141.1:p.Ile244Val
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.730A>G
  hgvsp: ENSP00000455155.1:p.Ile244Val
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28621
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7297
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile244Val
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-41961826-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961826
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961826
    reference: chr 15
allele count: 1
allele frequency: 8.381808123648433e-6
allele num: 119306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26447C>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.734C>G
  hgvsp: ENSP00000219905.7:p.Thr245Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.734C>G
  hgvsp: ENSP00000457151.1:p.Thr245Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.734C>G
  hgvsp: ENSP00000456141.1:p.Thr245Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.734C>G
  hgvsp: ENSP00000457035.1:p.Thr245Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.734C>G
  hgvsp: ENSP00000442467.1:p.Thr245Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.734C>G
  hgvsp: ENSP00000374586.4:p.Thr245Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.734C>G
  hgvsp: ENSP00000455155.1:p.Thr245Ser
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr245Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

15-41961845-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961845
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961845
    reference: chr 15
allele count: 1
allele frequency: 8.416233230655287e-6
allele num: 118818
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.753C>T
  hgvsp: ENST00000389936.4:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.753C>T
  hgvsp: ENST00000545763.1:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.753C>T
  hgvsp: ENST00000563576.1:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.753C>T
  hgvsp: ENST00000566718.1:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.753C>T
  hgvsp: ENST00000219905.7:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26428C>T
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.753C>T
  hgvsp: ENST00000566586.1:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.753C>T
  hgvsp: ENST00000570161.1:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18607
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38344
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Tyr251Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

15-41961859-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961859
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961859
    reference: chr 15
allele count: 1
allele frequency: 8.443806467955754e-6
allele num: 118430
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.767A>G
  hgvsp: ENSP00000219905.7:p.Lys256Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.767A>G
  hgvsp: ENSP00000457151.1:p.Lys256Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.767A>G
  hgvsp: ENSP00000456141.1:p.Lys256Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.767A>G
  hgvsp: ENSP00000457035.1:p.Lys256Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.767A>G
  hgvsp: ENSP00000455155.1:p.Lys256Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26414A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.767A>G
  hgvsp: ENSP00000374586.4:p.Lys256Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.767A>G
  hgvsp: ENSP00000442467.1:p.Lys256Arg
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18851
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3045
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys256Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

15-41961862-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961862
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961862
    reference: chr 15
allele count: 1
allele frequency: 8.449085808915476e-6
allele num: 118356
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.770G>A
  hgvsp: ENSP00000219905.7:p.Gly257Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.770G>A
  hgvsp: ENSP00000442467.1:p.Gly257Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.770G>A
  hgvsp: ENSP00000457035.1:p.Gly257Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.770G>A
  hgvsp: ENSP00000457151.1:p.Gly257Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.770G>A
  hgvsp: ENSP00000456141.1:p.Gly257Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.770G>A
  hgvsp: ENSP00000374586.4:p.Gly257Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.770G>A
  hgvsp: ENSP00000455155.1:p.Gly257Asp
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26411G>A
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22870
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly257Asp
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

15-41961869-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961869
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961869
    reference: chr 15
allele count: 3
allele frequency: 2.539102173471461e-5
allele num: 118152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.777G>A
  hgvsp: ENST00000566718.1:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.777G>A
  hgvsp: ENST00000563576.1:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.777G>A
  hgvsp: ENST00000389936.4:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26404G>A
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.777G>A
  hgvsp: ENST00000545763.1:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.777G>A
  hgvsp: ENST00000566586.1:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.777G>A
  hgvsp: ENST00000570161.1:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.777G>A
  hgvsp: ENST00000219905.7:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19269
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21767
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg259Arg
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS

15-41961877-G-GGCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961877
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961880
    reference: chr 15
allele count: 1
allele frequency: 8.475294516484449e-6
allele num: 117990
alternate allele: GGCT
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.787_789dupCTG
  hgvsp: ENSP00000456141.1:p.Leu263dup
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.787_789dupCTG
  hgvsp: ENSP00000219905.7:p.Leu263dup
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.787_789dupCTG
  hgvsp: ENSP00000457035.1:p.Leu263dup
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.787_789dupCTG
  hgvsp: ENSP00000457151.1:p.Leu263dup
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.787_789dupCTG
  hgvsp: ENSP00000455155.1:p.Leu263dup
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.787_789dupCTG
  hgvsp: ENSP00000442467.1:p.Leu263dup
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26394_76-26392dupCTG
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.787_789dupCTG
  hgvsp: ENSP00000374586.4:p.Leu263dup
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 19641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35483
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu263dup
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/15-41961885-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961885
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961885
    reference: chr 15
allele count: 1
allele frequency: 8.480757161999423e-6
allele num: 117914
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.793A>C
  hgvsp: ENSP00000219905.7:p.Asn265His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.793A>C
  hgvsp: ENSP00000456141.1:p.Asn265His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.793A>C
  hgvsp: ENSP00000455155.1:p.Asn265His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.793A>C
  hgvsp: ENSP00000374586.4:p.Asn265His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.793A>C
  hgvsp: ENSP00000457151.1:p.Asn265His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26388A>C
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.793A>C
  hgvsp: ENSP00000442467.1:p.Asn265His
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.793A>C
  hgvsp: ENSP00000457035.1:p.Asn265His
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19633
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn265His
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

15-41961892-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961892
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961892
    reference: chr 15
allele count: 1
allele frequency: 8.490117503226245e-6
allele num: 117784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.800C>T
  hgvsp: ENSP00000457151.1:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.800C>T
  hgvsp: ENSP00000442467.1:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.800C>T
  hgvsp: ENSP00000457035.1:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.800C>T
  hgvsp: ENSP00000219905.7:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.800C>T
  hgvsp: ENSP00000374586.4:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.800C>T
  hgvsp: ENSP00000456141.1:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26381C>T
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.800C>T
  hgvsp: ENSP00000455155.1:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6964
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19755
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro267Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-41961895-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961895
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961895
    reference: chr 15
allele count: 2
allele frequency: 1.696870969931446e-5
allele num: 117864
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.803A>G
  hgvsp: ENSP00000219905.7:p.Gln268Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.803A>G
  hgvsp: ENSP00000457035.1:p.Gln268Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.803A>G
  hgvsp: ENSP00000457151.1:p.Gln268Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.803A>G
  hgvsp: ENSP00000456141.1:p.Gln268Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26378A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.803A>G
  hgvsp: ENSP00000455155.1:p.Gln268Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.803A>G
  hgvsp: ENSP00000442467.1:p.Gln268Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.803A>G
  hgvsp: ENSP00000374586.4:p.Gln268Arg
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19800
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 34294
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln268Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

15-41961902-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961902
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961902
    reference: chr 15
allele count: 2
allele frequency: 1.697965836927361e-5
allele num: 117788
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.810T>C
  hgvsp: ENST00000566586.1:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.810T>C
  hgvsp: ENST00000389936.4:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.810T>C
  hgvsp: ENST00000566718.1:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.810T>C
  hgvsp: ENST00000563576.1:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.810T>C
  hgvsp: ENST00000570161.1:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.810T>C
  hgvsp: ENST00000219905.7:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26371T>C
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.810T>C
  hgvsp: ENST00000545763.1:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34967
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp270Asp
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

15-41961903-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961903
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961903
    reference: chr 15
allele count: 3
allele frequency: 2.549632852869187e-5
allele num: 117664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.811G>A
  hgvsp: ENSP00000374586.4:p.Gly271Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.811G>A
  hgvsp: ENSP00000456141.1:p.Gly271Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.811G>A
  hgvsp: ENSP00000457151.1:p.Gly271Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.811G>A
  hgvsp: ENSP00000457035.1:p.Gly271Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.811G>A
  hgvsp: ENSP00000455155.1:p.Gly271Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26370G>A
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.811G>A
  hgvsp: ENSP00000219905.7:p.Gly271Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.811G>A
  hgvsp: ENSP00000442467.1:p.Gly271Arg
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7288
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20056
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18956
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4461
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3211
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly271Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

15-41961914-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961914
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961914
    reference: chr 15
allele count: 1
allele frequency: 8.501088139281828e-6
allele num: 117632
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.822G>T
  hgvsp: ENSP00000219905.7:p.Lys274Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.822G>T
  hgvsp: ENSP00000374586.4:p.Lys274Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.822G>T
  hgvsp: ENSP00000455155.1:p.Lys274Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.822G>T
  hgvsp: ENSP00000457035.1:p.Lys274Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.822G>T
  hgvsp: ENSP00000442467.1:p.Lys274Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.822G>T
  hgvsp: ENSP00000456141.1:p.Lys274Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.822G>T
  hgvsp: ENSP00000457151.1:p.Lys274Asn
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26359G>T
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7881
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3089
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32304
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys274Asn
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

15-41961917-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961917
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961917
    reference: chr 15
allele count: 1
allele frequency: 8.50311213904289e-6
allele num: 117604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.825C>G
  hgvsp: ENSP00000442467.1:p.Asn275Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.825C>G
  hgvsp: ENSP00000455155.1:p.Asn275Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.825C>G
  hgvsp: ENSP00000457035.1:p.Asn275Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26356C>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.825C>G
  hgvsp: ENSP00000374586.4:p.Asn275Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.825C>G
  hgvsp: ENSP00000456141.1:p.Asn275Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.825C>G
  hgvsp: ENSP00000457151.1:p.Asn275Lys
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.825C>G
  hgvsp: ENSP00000219905.7:p.Asn275Lys
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn275Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/15-41961926-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961926
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961926
    reference: chr 15
allele count: 1
allele frequency: 8.494877588813945e-6
allele num: 117718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.834C>A
  hgvsp: ENSP00000457151.1:p.Asp278Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26347C>A
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.834C>A
  hgvsp: ENSP00000455155.1:p.Asp278Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.834C>A
  hgvsp: ENSP00000219905.7:p.Asp278Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.834C>A
  hgvsp: ENSP00000442467.1:p.Asp278Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457250
  ensembl transcript: ENST00000561532
  gene symbol: MGA
  hgvsc: ENST00000561532.1:c.5C>A
  hgvsp: ENSP00000457250.1:p.Asp2Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.834C>A
  hgvsp: ENSP00000456141.1:p.Asp278Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.834C>A
  hgvsp: ENSP00000457035.1:p.Asp278Glu
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.834C>A
  hgvsp: ENSP00000374586.4:p.Asp278Glu
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18466
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34773
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp278Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

15-41961928-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961928
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961928
    reference: chr 15
allele count: 1
allele frequency: 8.483779014524229e-6
allele num: 117872
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.836A>G
  hgvsp: ENSP00000456141.1:p.Gln279Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.836A>G
  hgvsp: ENSP00000457035.1:p.Gln279Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.836A>G
  hgvsp: ENSP00000374586.4:p.Gln279Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.836A>G
  hgvsp: ENSP00000442467.1:p.Gln279Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.836A>G
  hgvsp: ENSP00000219905.7:p.Gln279Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.836A>G
  hgvsp: ENSP00000455155.1:p.Gln279Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457250
  ensembl transcript: ENST00000561532
  gene symbol: MGA
  hgvsc: ENST00000561532.1:c.7A>G
  hgvsp: ENSP00000457250.1:p.Gln3Arg
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26345A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.836A>G
  hgvsp: ENSP00000457151.1:p.Gln279Arg
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6801
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21797
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4049
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln279Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/15-41961931-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961931
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961931
    reference: chr 15
allele count: 5
allele frequency: 4.239803273128127e-5
allele num: 117930
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26342A>C
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457250
  ensembl transcript: ENST00000561532
  gene symbol: MGA
  hgvsc: ENST00000561532.1:c.10A>C
  hgvsp: ENSP00000457250.1:p.Glu4Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.839A>C
  hgvsp: ENSP00000219905.7:p.Glu280Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.839A>C
  hgvsp: ENSP00000455155.1:p.Glu280Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.839A>C
  hgvsp: ENSP00000457035.1:p.Glu280Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.839A>C
  hgvsp: ENSP00000442467.1:p.Glu280Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.839A>C
  hgvsp: ENSP00000374586.4:p.Glu280Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.839A>C
  hgvsp: ENSP00000456141.1:p.Glu280Ala
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.839A>C
  hgvsp: ENSP00000457151.1:p.Glu280Ala
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6309
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22465
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18663
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37242
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu280Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

15-41961935-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961935
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961935
    reference: chr 15
allele count: 1
allele frequency: 8.48219587086705e-6
allele num: 117894
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.843G>C
  hgvsp: ENST00000219905.7:c.843G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.843G>C
  hgvsp: ENST00000545763.1:c.843G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26338G>C
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.843G>C
  hgvsp: ENST00000389936.4:c.843G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457250
  ensembl transcript: ENST00000561532
  gene symbol: MGA
  hgvsc: ENST00000561532.1:c.14G>C
  hgvsp: ENST00000561532.1:c.14G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.843G>C
  hgvsp: ENST00000566586.1:c.843G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.843G>C
  hgvsp: ENST00000563576.1:c.843G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.843G>C
  hgvsp: ENST00000566718.1:c.843G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.843G>C
  hgvsp: ENST00000570161.1:c.843G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4055
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly281Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ

15-41961935-GAAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961935
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961932
    reference: chr 15
allele count: 1
allele frequency: 8.48219587086705e-6
allele num: 117894
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.848_850delATA
  hgvsp: ENSP00000442467.1:p.Asn283del
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.848_850delATA
  hgvsp: ENSP00000457035.1:p.Asn283del
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.848_850delATA
  hgvsp: ENSP00000374586.4:p.Asn283del
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.848_850delATA
  hgvsp: ENSP00000456141.1:p.Asn283del
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.848_850delATA
  hgvsp: ENSP00000457151.1:p.Asn283del
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.848_850delATA
  hgvsp: ENSP00000219905.7:p.Asn283del
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457250
  ensembl transcript: ENST00000561532
  gene symbol: MGA
  hgvsc: ENST00000561532.1:c.19_21delATA
  hgvsp: ENSP00000457250.1:p.Asn7del
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.848_850delATA
  hgvsp: ENSP00000455155.1:p.Asn283del
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26333_76-26331delATA
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23212
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2678
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn283del
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: GAAT
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

15-41961940-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961940
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961940
    reference: chr 15
allele count: 2
allele frequency: 1.693336720006773e-5
allele num: 118110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.848A>G
  hgvsp: ENSP00000442467.1:p.Asn283Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457250
  ensembl transcript: ENST00000561532
  gene symbol: MGA
  hgvsc: ENST00000561532.1:c.19A>G
  hgvsp: ENSP00000457250.1:p.Asn7Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.848A>G
  hgvsp: ENSP00000456141.1:p.Asn283Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.848A>G
  hgvsp: ENSP00000457151.1:p.Asn283Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.848A>G
  hgvsp: ENSP00000455155.1:p.Asn283Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.848A>G
  hgvsp: ENSP00000219905.7:p.Asn283Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26333A>G
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.848A>G
  hgvsp: ENSP00000374586.4:p.Asn283Ser
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.848A>G
  hgvsp: ENSP00000457035.1:p.Asn283Ser
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24025
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn283Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

15-41961944-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961944
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961944
    reference: chr 15
allele count: 16
allele frequency: 1.353340212812748e-4
allele num: 118226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.852T>C
  hgvsp: ENST00000566586.1:c.852T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.852T>C
  hgvsp: ENST00000389936.4:c.852T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26329T>C
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.852T>C
  hgvsp: ENST00000219905.7:c.852T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457250
  ensembl transcript: ENST00000561532
  gene symbol: MGA
  hgvsc: ENST00000561532.1:c.23T>C
  hgvsp: ENST00000561532.1:c.23T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.852T>C
  hgvsp: ENST00000570161.1:c.852T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.852T>C
  hgvsp: ENST00000566718.1:c.852T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.852T>C
  hgvsp: ENST00000545763.1:c.852T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.852T>C
  hgvsp: ENST00000563576.1:c.852T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24444
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18994
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile284Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

15-41961947-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961947
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961947
    reference: chr 15
allele count: 1
allele frequency: 8.451513666097598e-6
allele num: 118322
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.855C>T
  hgvsp: ENST00000219905.7:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.855C>T
  hgvsp: ENST00000566718.1:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26326C>T
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.855C>T
  hgvsp: ENST00000545763.1:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.855C>T
  hgvsp: ENST00000570161.1:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457250
  ensembl transcript: ENST00000561532
  gene symbol: MGA
  hgvsc: ENST00000561532.1:c.26C>T
  hgvsp: ENST00000561532.1:c.26C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.855C>T
  hgvsp: ENST00000563576.1:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.855C>T
  hgvsp: ENST00000566586.1:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.855C>T
  hgvsp: ENST00000389936.4:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4063
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser285Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

15-41961952-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41961952
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 41961952
    reference: chr 15
allele count: 1
allele frequency: 8.43469019382918e-6
allele num: 118558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457250
  ensembl transcript: ENST00000561532
  gene symbol: MGA
  hgvsc: ENST00000561532.1:c.31C>T
  hgvsp: ENSP00000457250.1:p.Ser11Phe
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000455155
  ensembl transcript: ENST00000566718
  gene symbol: MGA
  hgvsc: ENST00000566718.1:c.860C>T
  hgvsp: ENSP00000455155.1:p.Ser287Phe
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457035
  ensembl transcript: ENST00000570161
  gene symbol: MGA
  hgvsc: ENST00000570161.1:c.860C>T
  hgvsp: ENSP00000457035.1:p.Ser287Phe
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174197
  ensembl transcript: ENST00000568630
  gene symbol: MGA
  hgvsc: ENST00000568630.1:n.76-26321C>T
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000442467
  ensembl transcript: ENST00000545763
  gene symbol: MGA
  hgvsc: ENST00000545763.1:c.860C>T
  hgvsp: ENSP00000442467.1:p.Ser287Phe
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000219905
  ensembl transcript: ENST00000219905
  gene symbol: MGA
  hgvsc: ENST00000219905.7:c.860C>T
  hgvsp: ENSP00000219905.7:p.Ser287Phe
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000457151
  ensembl transcript: ENST00000563576
  gene symbol: MGA
  hgvsc: ENST00000563576.1:c.860C>T
  hgvsp: ENSP00000457151.1:p.Ser287Phe
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000456141
  ensembl transcript: ENST00000566586
  gene symbol: MGA
  hgvsc: ENST00000566586.1:c.860C>T
  hgvsp: ENSP00000456141.1:p.Ser287Phe
  variant of: http://identifiers.org/hgnc/14010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174197
  ensembl protein: ENSP00000374586
  ensembl transcript: ENST00000389936
  gene symbol: MGA
  hgvsc: ENST00000389936.4:c.860C>T
  hgvsp: ENSP00000374586.4:p.Ser287Phe
  variant of: http://identifiers.org/hgnc/14010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser287Phe
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2353
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8856
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43308
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

MQ
type: SiteQuality
SIO_000300: 5.843e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.69e0

VQSLOD
type: SiteQuality
SIO_000300: -1.566e0

DP
type: SiteQuality
SIO_000300: 1.715746e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.01e-1

FS
type: SiteQuality
SIO_000300: 5.44e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2352
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 1.715856e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

FS
type: SiteQuality
SIO_000300: 1.687e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.445e1

MQRankSum
type: SiteQuality
SIO_000300: -4.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.28e-1

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2158
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8844
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2353
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43536
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.248066662670104e-4
allele num: 66724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 1.527e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

DP
type: SiteQuality
SIO_000300: 1.717929e6

GenotypeQuality
all individuals: 2355
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8844
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997422216893472e-5
allele num: 66724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 1.71637e6

FS
type: SiteQuality
SIO_000300: 5.36e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e0

MQRankSum
type: SiteQuality
SIO_000300: -6.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

QD
type: SiteQuality
SIO_000300: 1.505e1

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8840
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43584
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2166
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

VQSLOD
type: SiteQuality
SIO_000300: -2.589e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

QD
type: SiteQuality
SIO_000300: 1.539e1

MQRankSum
type: SiteQuality
SIO_000300: -7.84e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 6.031e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.35e-1

DP
type: SiteQuality
SIO_000300: 1.71677e6

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43727
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8850
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2162
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

FS
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SIO_000300: 0.0e0

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ReadPosRankSum
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SIO_000300: 1.03e0

MQRankSum
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DP
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SIO_000300: 1.718094e6

QD
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BaseQRankSum
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SIO_000300: 2.14e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
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VQSLOD
type: SiteQuality
SIO_000300: 5.88e-1

BaseQRankSum
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MQRankSum
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SIO_000300: -6.919999999999999e-1

InbreedingCoeff
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FS
type: SiteQuality
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ClippingRankSum
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DP
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QD
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MQ
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
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SIO_000300: 5.956e1

ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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DP
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SIO_000300: 1.718408e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.53e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
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allele count: 4
allele frequency: 6.047777441790142e-4
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.664e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.718398e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.425e0

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
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allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
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MQ
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VQSLOD
type: SiteQuality
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DP
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FS
type: SiteQuality
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9804
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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Latino
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MQRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQ
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QD
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InbreedingCoeff
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FS
type: SiteQuality
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DP
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Other
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Latino
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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MQRankSum
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VQSLOD
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MQ
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FS
type: SiteQuality
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DP
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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DP
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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Other
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allele num: 900
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
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European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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MQ
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FS
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11576
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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South Asian
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Other
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ClippingRankSum
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BaseQRankSum
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FS
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MQ
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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DP
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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QD
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ClippingRankSum
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BaseQRankSum
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SIO_000300: 4.78e0

DP
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MQRankSum
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InbreedingCoeff
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MQ
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FS
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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FS
type: SiteQuality
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MQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 900
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 4.844961240310077e-4
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African
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allele frequency: 3.060599877576005e-4
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.996793431028799e-5
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East Asian
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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ClippingRankSum
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VQSLOD
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FS
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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South Asian
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Other
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ClippingRankSum
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MQRankSum
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QD
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DP
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InbreedingCoeff
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FS
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MQ
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 900
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele num: 16512
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European (Finnish)
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European (Non-Finnish)
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African
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QD
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ReadPosRankSum
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MQRankSum
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DP
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FS
type: SiteQuality
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MQ
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66740
num of homozygotes: 0

Other
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African
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Latino
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South Asian
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East Asian
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European (Finnish)
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FS
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DP
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QD
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MQ
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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South Asian
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BaseQRankSum
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QD
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FS
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InbreedingCoeff
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MQ
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MQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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ClippingRankSum
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SIO_000300: 2.02e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
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SIO_000300: 1.311e1

ClippingRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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SIO_000300: -8.98e-1

MQ
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InbreedingCoeff
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SIO_000300: 3.0e-3

DP
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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MQRankSum
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FS
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DP
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ClippingRankSum
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QD
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ReadPosRankSum
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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QD
type: SiteQuality
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MQRankSum
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MQ
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DP
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SIO_000300: 1.715884e6

BaseQRankSum
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SIO_000300: -2.666e0

VQSLOD
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 2.96e-1

ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

BaseQRankSum
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.17e-1

DP
type: SiteQuality
SIO_000300: 1.715843e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.96e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.491983577571999e-5
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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QD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 5.28e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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African
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East Asian
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allele frequency: 2.318571759795966e-4
allele num: 8626
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European (Finnish)
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num of homozygotes: 0

BaseQRankSum
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ClippingRankSum
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MQ
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FS
type: SiteQuality
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VQSLOD
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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South Asian
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African
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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FS
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VQSLOD
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QD
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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East Asian
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South Asian
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European (Non-Finnish)
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allele num: 66738
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Other
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European (Finnish)
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BaseQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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QD
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MQ
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MQRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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East Asian
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Other
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.51e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.452e0

VQSLOD
type: SiteQuality
SIO_000300: -9.923e-1

DP
type: SiteQuality
SIO_000300: 1.713511e6

MQ
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InbreedingCoeff
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SIO_000300: 2.5e-3

FS
type: SiteQuality
SIO_000300: 6.57e-1

QD
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SIO_000300: 1.656e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
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MQRankSum
type: SiteQuality
SIO_000300: -1.457e0

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 1.713343e6

FS
type: SiteQuality
SIO_000300: 1.118e0

ClippingRankSum
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SIO_000300: -1.949e0

BaseQRankSum
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SIO_000300: -5.299e0

ReadPosRankSum
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SIO_000300: 1.78e0

VQSLOD
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SIO_000300: -2.312e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.52e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 6.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 1.713242e6

MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.25e-1

MQ
type: SiteQuality
SIO_000300: 5.99e1

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.87e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.713086e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
SIO_000300: 1.652e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

FS
type: SiteQuality
SIO_000300: 2.298e0

DP
type: SiteQuality
SIO_000300: 1.713002e6

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele num: 11572
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele num: 11572
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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MQ
type: SiteQuality
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QD
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ClippingRankSum
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VQSLOD
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FS
type: SiteQuality
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DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele num: 66720
num of homozygotes: 0

East Asian
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Latino
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European (Finnish)
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African
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South Asian
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Other
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VQSLOD
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FS
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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num of homozygotes: 0

South Asian
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Other
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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allele num: 66710
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DP
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.296e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 1.711031e6

MQRankSum
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SIO_000300: 9.19e-1

MQ
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SIO_000300: 5.988e1

QD
type: SiteQuality
SIO_000300: 1.481e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.944e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.609e0

VQSLOD
type: SiteQuality
SIO_000300: -5.291e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.649999999999999e-1

FS
type: SiteQuality
SIO_000300: 9.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -3.0e-4

DP
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SIO_000300: 1.710681e6

BaseQRankSum
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SIO_000300: -7.634e0

MQRankSum
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.501e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.04e-1

FS
type: SiteQuality
SIO_000300: 1.158e0

DP
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VQSLOD
type: SiteQuality
SIO_000300: -1.623e-1

ReadPosRankSum
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SIO_000300: -1.361e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.799e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

FS
type: SiteQuality
SIO_000300: 3.921e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.95e-1

DP
type: SiteQuality
SIO_000300: 1.705695e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502313562886846e-5
allele num: 66564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e-1

FS
type: SiteQuality
SIO_000300: 1.597e0

DP
type: SiteQuality
SIO_000300: 1.704932e6

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

QD
type: SiteQuality
SIO_000300: 1.271e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.99e0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503126503126503e-5
allele num: 66528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 8.23e0

DP
type: SiteQuality
SIO_000300: 1.701045e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507022725902707e-5
allele num: 66356
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.689822e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171508903467666e-4
allele num: 8536
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African
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South Asian
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

MQRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQ
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DP
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FS
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65898
num of homozygotes: 0

African
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518925815663163e-5
allele num: 65836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.614296e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

QD
type: SiteQuality
SIO_000300: 1.178e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.13e-1

GenotypeQuality
all individuals: 6158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525413387027885e-5
allele num: 65556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.56581e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-1

FS
type: SiteQuality
SIO_000300: 6.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.115e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37105
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11210
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.112469437652811e-5
allele num: 16360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.533661e6

MQ
type: SiteQuality
SIO_000300: 5.895e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.66e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.694e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.926977325477593e-5
allele num: 11202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.539e0

QD
type: SiteQuality
SIO_000300: 1.288e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.705e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.168e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQ
type: SiteQuality
SIO_000300: 5.87e1

DP
type: SiteQuality
SIO_000300: 1.526709e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1084
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.600576092174748e-4
allele num: 8332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.509454e6

MQRankSum
type: SiteQuality
SIO_000300: -5.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-1

QD
type: SiteQuality
SIO_000300: 1.439e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.058e0

FS
type: SiteQuality
SIO_000300: 2.659e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.523461304082876e-4
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.495789e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.957e0

MQ
type: SiteQuality
SIO_000300: 5.671e1

QD
type: SiteQuality
SIO_000300: 1.77e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.986340762041697e-5
allele num: 11128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65086
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.443e1

DP
type: SiteQuality
SIO_000300: 1.480423e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

VQSLOD
type: SiteQuality
SIO_000300: 2.73e-1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.318e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 142
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4663
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GenotypeQuality
all individuals: 2219
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.073896471166851e-5
allele num: 65064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 1.469289e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

FS
type: SiteQuality
SIO_000300: 1.4026e1

MQRankSum
type: SiteQuality
SIO_000300: 9.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.097e0

QD
type: SiteQuality
SIO_000300: 1.391e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 778
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.991188635137565e-5
allele num: 11122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53803562090498e-5
allele num: 65018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.82e-1

DP
type: SiteQuality
SIO_000300: 1.464716e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.155e1

MQRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.122398001665279e-4
allele num: 9608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.919e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.417e0

QD
type: SiteQuality
SIO_000300: 9.48e0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.4e-2

DP
type: SiteQuality
SIO_000300: 1.46455e6

GenotypeQuality
all individuals: 3331
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11092
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540072691431036e-5
allele num: 64932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.92e0

MQRankSum
type: SiteQuality
SIO_000300: 9.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.06e0

QD
type: SiteQuality
SIO_000300: 1.065e1

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.53e-1

DP
type: SiteQuality
SIO_000300: 1.457158e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64930
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.041232819658476e-4
allele num: 9604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.292e0

MQRankSum
type: SiteQuality
SIO_000300: -7.38e-1

QD
type: SiteQuality
SIO_000300: 1.652e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.63e-1

FS
type: SiteQuality
SIO_000300: 2.255e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 1.457545e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4016
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GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11110
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53888769197624e-5
allele num: 64982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.884e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.87e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.465143e6

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e0

QD
type: SiteQuality
SIO_000300: 1.43e1

VQSLOD
type: SiteQuality
SIO_000300: -6.301e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536853752996865e-5
allele num: 65068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11142
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

FS
type: SiteQuality
SIO_000300: 7.384e0

DP
type: SiteQuality
SIO_000300: 1.469095e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9622
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.069367710251688e-4
allele num: 16290
num of homozygotes: 0

Latino
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allele num: 11154
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.15e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65088
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1551
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4055
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37917
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1594
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 7.5e0
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536381514257621e-5
allele num: 65088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 1.480927e6

FS
type: SiteQuality
SIO_000300: 8.289999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 1.669e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.032e0

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
all individuals: 793
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38766
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3074
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1594
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2146
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4098
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.5e0
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533601202343343e-5
allele num: 65206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.038637307852098e-4
allele num: 9628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

FS
type: SiteQuality
SIO_000300: 1.887e0

QD
type: SiteQuality
SIO_000300: 1.825e1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e-1

DP
type: SiteQuality
SIO_000300: 1.4874e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2902
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4075
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2350
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38132
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.297442181038444e-4
allele num: 65290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11182
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.038205980066445e-4
allele num: 9632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

DP
type: SiteQuality
SIO_000300: 1.492955e6

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

QD
type: SiteQuality
SIO_000300: 1.521e1

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 872
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1512
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1882
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40286
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.128953174797744e-5
allele num: 16316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.903e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.463e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.50174e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

FS
type: SiteQuality
SIO_000300: 9.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-2

QD
type: SiteQuality
SIO_000300: 1.537e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.48e-1