9-138650402-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138650402
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138650402
    reference: chr 9
allele count: 6
allele frequency: 4.993840929520258e-5
allele num: 120148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*464+48C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.854+48C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.797+48C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.695+48C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.797+48C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.737+48C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.755+48C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.673+48C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.797+48C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.854+48C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.710+48C>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12087
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7611
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

9-138650402-CGA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138650402
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138650400
    reference: chr 9
allele count: 2
allele frequency: 1.66461364317342e-5
allele num: 120148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.673+52_673+53delAG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.854+52_854+53delAG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.755+52_755+53delAG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.737+52_737+53delAG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*464+52_*464+53delAG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.797+52_797+53delAG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.797+52_797+53delAG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.710+52_710+53delAG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.695+52_695+53delAG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.797+52_797+53delAG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.854+52_854+53delAG
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9363
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11666
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: CGA
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

9-138650403-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138650403
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138650403
    reference: chr 9
allele count: 2
allele frequency: 1.664225802156837e-5
allele num: 120176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.755+49G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.710+49G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.673+49G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*464+49G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.797+49G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.854+49G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.797+49G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.797+49G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.695+49G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.854+49G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.737+49G>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14104
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

9-138651472-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651472
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651472
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 95012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.855-53A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.855-53A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.674-53A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.711-44A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.798-53A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.798-53A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.756-53A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.738-53A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.798-53A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*465-53A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.696-53A>G
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12810
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2878
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-138651473-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651473
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651473
    reference: chr 9
allele count: 11
allele frequency: 1.163651750766952e-4
allele num: 94530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.696-52C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.798-52C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.798-52C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.756-52C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*465-52C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.738-52C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.855-52C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.798-52C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.711-43C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.674-52C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.855-52C>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4351
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7931
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12499
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7840
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12966
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11333
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13943
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

9-138651473-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651473
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651473
    reference: chr 9
allele count: 67
allele frequency: 7.087697027398709e-4
allele num: 94530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.798-52C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.711-43C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*465-52C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.798-52C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.855-52C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.798-52C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.756-52C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.855-52C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.738-52C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.674-52C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.696-52C>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4351
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12966
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11333
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7840
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7931
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 12499
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5377
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

9-138651474-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651474
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651474
    reference: chr 9
allele count: 16
allele frequency: 1.686020780206116e-4
allele num: 94898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.798-51G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.711-42G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.756-51G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.674-51G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.855-51G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.798-51G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.855-51G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*465-51G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.798-51G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.738-51G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.696-51G>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13658
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11589
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11287
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8233
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7896
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

9-138651481-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651481
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651481
    reference: chr 9
allele count: 1
allele frequency: 1.039414601696325e-5
allele num: 96208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.855-44C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.674-44C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.798-44C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.696-44C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.798-44C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.798-44C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.756-44C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.738-44C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*465-44C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.711-35C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.855-44C>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7002
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

9-138651482-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651482
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651482
    reference: chr 9
allele count: 10521
allele frequency: 1.080317903643159e-1
allele num: 97388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.674-43A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.855-43A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.696-43A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.798-43A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.855-43A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*465-43A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.738-43A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.711-34A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.798-43A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.798-43A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.756-43A>G
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 3.75e1
  variant carriers: 611
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 7800
  bin: 7.5e0
  variant carriers: 685
genotype depth: GenotypeDepth
  all individuals: 7366
  bin: 1.75e1
  variant carriers: 2073
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 2.5e0
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 9339
  bin: 1.25e1
  variant carriers: 1208
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 18001
  bin: 2.25e1
  variant carriers: 2282
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 3.25e1
  variant carriers: 1117
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 307
genotype depth: GenotypeDepth
  all individuals: 9835
  bin: 2.75e1
  variant carriers: 1936
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 46
num of homozygotes: 683
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

9-138651500-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651500
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651500
    reference: chr 9
allele count: 34
allele frequency: 3.28813756020193e-4
allele num: 103402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.798-25C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.738-25C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.711-16C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*465-25C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.674-25C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.798-25C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.798-25C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.855-25C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.696-25C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.855-25C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.756-25C>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6934
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14154
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27630
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

9-138651501-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651501
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651501
    reference: chr 9
allele count: 2
allele frequency: 1.921709552818187e-5
allele num: 104074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.855-24G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.696-24G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.798-24G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*465-24G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.855-24G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.798-24G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.738-24G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.711-15G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.674-24G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.756-24G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.798-24G>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28120
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

9-138651501-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651501
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651501
    reference: chr 9
allele count: 1
allele frequency: 9.608547764090935e-6
allele num: 104074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.696-24G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.798-24G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.738-24G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.711-15G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.855-24G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*465-24G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.798-24G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.674-24G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.756-24G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.855-24G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.798-24G>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28120
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

http://identifiers.org/exac.variant/9-138651503-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651503
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651503
    reference: chr 9
allele count: 1
allele frequency: 9.480649993363545e-6
allele num: 105478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*465-22C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.674-22C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.756-22C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.798-22C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.738-22C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.798-22C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.711-13C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.855-22C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.798-22C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.696-22C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.855-22C>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

9-138651516-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651516
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651516
    reference: chr 9
allele count: 2
allele frequency: 1.827285019917407e-5
allele num: 109452
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.696-9G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.711G>A
  hgvsp: ENST00000487664.1:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*465-9G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.798-9G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.855-9G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.855-9G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.756-9G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.738-9G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.798-9G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.674-9G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.798-9G>A
  variant of: http://identifiers.org/hgnc/18865
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32046
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 7.75e1
  variant carriers: 0
hgvs: c.711G>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

9-138651518-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651518
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651518
    reference: chr 9
allele count: 1
allele frequency: 9.103985724950384e-6
allele num: 109842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*465-7G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.855-7G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.756-7G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.713G>A
  hgvsp: ENSP00000417851.1:p.Gly238Asp
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.855-7G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.798-7G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.738-7G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.696-7G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.798-7G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.798-7G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.674-7G>A
  variant of: http://identifiers.org/hgnc/18865
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly238Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

9-138651531-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651531
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651531
    reference: chr 9
allele count: 2
allele frequency: 1.781768940203834e-5
allele num: 112248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.861C>T
  hgvsp: ENST00000298480.5:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.804C>T
  hgvsp: ENST00000263604.3:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.804C>T
  hgvsp: ENST00000488444.2:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*471C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.744C>T
  hgvsp: ENST00000486577.2:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.861C>T
  hgvsp: ENST00000371757.2:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.762C>T
  hgvsp: ENST00000491806.2:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.726C>T
  hgvsp: ENST00000487664.1:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.680C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.702C>T
  hgvsp: ENST00000473941.1:c.702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.804C>T
  hgvsp: ENST00000490355.2:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17090
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys287Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/9-138651537-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651537
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651537
    reference: chr 9
allele count: 4
allele frequency: 3.508895048949086e-5
allele num: 113996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.750C>A
  hgvsp: ENST00000486577.2:c.750C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.810C>A
  hgvsp: ENST00000488444.2:c.810C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.867C>A
  hgvsp: ENST00000371757.2:c.867C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.768C>A
  hgvsp: ENST00000491806.2:c.768C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.732C>A
  hgvsp: ENST00000487664.1:c.732C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.867C>A
  hgvsp: ENST00000298480.5:c.867C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*477C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.810C>A
  hgvsp: ENST00000490355.2:c.810C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.708C>A
  hgvsp: ENST00000473941.1:c.708C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.810C>A
  hgvsp: ENST00000263604.3:c.810C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.686C>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17333
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile289Ile
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

9-138651549-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651549
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651549
    reference: chr 9
allele count: 3
allele frequency: 2.579491324310846e-5
allele num: 116302
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.879G>A
  hgvsp: ENST00000371757.2:c.879G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.744G>A
  hgvsp: ENST00000487664.1:c.744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.780G>A
  hgvsp: ENST00000491806.2:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.762G>A
  hgvsp: ENST00000486577.2:c.762G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.879G>A
  hgvsp: ENST00000298480.5:c.879G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*489G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.822G>A
  hgvsp: ENST00000263604.3:c.822G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.822G>A
  hgvsp: ENST00000488444.2:c.822G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.822G>A
  hgvsp: ENST00000490355.2:c.822G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.698G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.720G>A
  hgvsp: ENST00000473941.1:c.720G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17738
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu293Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS

9-138651550-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651550
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651550
    reference: chr 9
allele count: 1
allele frequency: 8.590917681826773e-6
allele num: 116402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.763C>T
  hgvsp: ENSP00000417578.2:p.Arg255Trp
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.721C>T
  hgvsp: ENSP00000420764.1:p.Arg241Trp
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.781C>T
  hgvsp: ENSP00000419086.2:p.Arg261Trp
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.823C>T
  hgvsp: ENSP00000418003.2:p.Arg275Trp
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.823C>T
  hgvsp: ENSP00000263604.3:p.Arg275Trp
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*490C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.880C>T
  hgvsp: ENSP00000360822.2:p.Arg294Trp
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.745C>T
  hgvsp: ENSP00000417851.1:p.Arg249Trp
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.823C>T
  hgvsp: ENSP00000419007.2:p.Arg275Trp
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.699C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.880C>T
  hgvsp: ENSP00000298480.5:p.Arg294Trp
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg294Trp
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

9-138651552-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651552
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651552
    reference: chr 9
allele count: 9
allele frequency: 7.683507777417317e-5
allele num: 117134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.825G>A
  hgvsp: ENST00000488444.2:c.825G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*492G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.825G>A
  hgvsp: ENST00000490355.2:c.825G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.765G>A
  hgvsp: ENST00000486577.2:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.723G>A
  hgvsp: ENST00000473941.1:c.723G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.783G>A
  hgvsp: ENST00000491806.2:c.783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.882G>A
  hgvsp: ENST00000371757.2:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.882G>A
  hgvsp: ENST00000298480.5:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.701G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.747G>A
  hgvsp: ENST00000487664.1:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.825G>A
  hgvsp: ENST00000263604.3:c.825G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg294Arg
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-138651555-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651555
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651555
    reference: chr 9
allele count: 76
allele frequency: 6.453037172890451e-4
allele num: 117774
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.885G>A
  hgvsp: ENST00000371757.2:c.885G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.786G>A
  hgvsp: ENST00000491806.2:c.786G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.704G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.726G>A
  hgvsp: ENST00000473941.1:c.726G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.768G>A
  hgvsp: ENST00000486577.2:c.768G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.828G>A
  hgvsp: ENST00000263604.3:c.828G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.750G>A
  hgvsp: ENST00000487664.1:c.750G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.828G>A
  hgvsp: ENST00000488444.2:c.828G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.828G>A
  hgvsp: ENST00000490355.2:c.828G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.885G>A
  hgvsp: ENST00000298480.5:c.885G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*495G>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 18064
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
hgvs: p.Ala295Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-138651558-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651558
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651558
    reference: chr 9
allele count: 1
allele frequency: 8.459807454782329e-6
allele num: 118206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.707C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.771C>T
  hgvsp: ENST00000486577.2:c.771C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.753C>T
  hgvsp: ENST00000487664.1:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*498C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.789C>T
  hgvsp: ENST00000491806.2:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.888C>T
  hgvsp: ENST00000298480.5:c.888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.729C>T
  hgvsp: ENST00000473941.1:c.729C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.831C>T
  hgvsp: ENST00000263604.3:c.831C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.888C>T
  hgvsp: ENST00000371757.2:c.888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.831C>T
  hgvsp: ENST00000490355.2:c.831C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.831C>T
  hgvsp: ENST00000488444.2:c.831C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly296Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

9-138651559-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651559
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651559
    reference: chr 9
allele count: 2
allele frequency: 1.688447641238645e-5
allele num: 118452
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.832G>A
  hgvsp: ENSP00000419007.2:p.Glu278Lys
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.772G>A
  hgvsp: ENSP00000417578.2:p.Glu258Lys
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.889G>A
  hgvsp: ENSP00000298480.5:p.Glu297Lys
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.832G>A
  hgvsp: ENSP00000263604.3:p.Glu278Lys
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.754G>A
  hgvsp: ENSP00000417851.1:p.Glu252Lys
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.832G>A
  hgvsp: ENSP00000418003.2:p.Glu278Lys
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.889G>A
  hgvsp: ENSP00000360822.2:p.Glu297Lys
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.730G>A
  hgvsp: ENSP00000420764.1:p.Glu244Lys
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*499G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.790G>A
  hgvsp: ENSP00000419086.2:p.Glu264Lys
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.708G>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu297Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/9-138651570-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651570
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651570
    reference: chr 9
allele count: 1
allele frequency: 8.381246123673667e-6
allele num: 119314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.843C>A
  hgvsp: ENST00000488444.2:c.843C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.843C>A
  hgvsp: ENST00000490355.2:c.843C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.801C>A
  hgvsp: ENST00000491806.2:c.801C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.783C>A
  hgvsp: ENST00000486577.2:c.783C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.843C>A
  hgvsp: ENST00000263604.3:c.843C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.900C>A
  hgvsp: ENST00000371757.2:c.900C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.900C>A
  hgvsp: ENST00000298480.5:c.900C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.765C>A
  hgvsp: ENST00000487664.1:c.765C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.741C>A
  hgvsp: ENST00000473941.1:c.741C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.719C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*510C>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser300Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

9-138651582-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651582
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651582
    reference: chr 9
allele count: 1
allele frequency: 8.349336227769892e-6
allele num: 119770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.855C>T
  hgvsp: ENST00000490355.2:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.912C>T
  hgvsp: ENST00000371757.2:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.813C>T
  hgvsp: ENST00000491806.2:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.855C>T
  hgvsp: ENST00000263604.3:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.855C>T
  hgvsp: ENST00000488444.2:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.795C>T
  hgvsp: ENST00000486577.2:c.795C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.753C>T
  hgvsp: ENST00000473941.1:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.777C>T
  hgvsp: ENST00000487664.1:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*522C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.731C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.912C>T
  hgvsp: ENST00000298480.5:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser304Ser
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum

9-138651594-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651594
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651594
    reference: chr 9
allele count: 1
allele frequency: 8.339448929214757e-6
allele num: 119912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*534C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.867C>T
  hgvsp: ENST00000263604.3:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.867C>T
  hgvsp: ENST00000488444.2:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.789C>T
  hgvsp: ENST00000487664.1:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.825C>T
  hgvsp: ENST00000491806.2:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.765C>T
  hgvsp: ENST00000473941.1:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.924C>T
  hgvsp: ENST00000371757.2:c.924C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.807C>T
  hgvsp: ENST00000486577.2:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.743C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.867C>T
  hgvsp: ENST00000490355.2:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.924C>T
  hgvsp: ENST00000298480.5:c.924C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys308Cys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

9-138651595-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651595
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651595
    reference: chr 9
allele count: 1
allele frequency: 8.339170752860335e-6
allele num: 119916
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.925A>G
  hgvsp: ENSP00000360822.2:p.Ile309Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.766A>G
  hgvsp: ENSP00000420764.1:p.Ile256Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.826A>G
  hgvsp: ENSP00000419086.2:p.Ile276Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.925A>G
  hgvsp: ENSP00000298480.5:p.Ile309Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.868A>G
  hgvsp: ENSP00000263604.3:p.Ile290Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.790A>G
  hgvsp: ENSP00000417851.1:p.Ile264Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.808A>G
  hgvsp: ENSP00000417578.2:p.Ile270Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*535A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.868A>G
  hgvsp: ENSP00000419007.2:p.Ile290Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.744A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.868A>G
  hgvsp: ENSP00000418003.2:p.Ile290Val
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile309Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

9-138651609-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651609
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651609
    reference: chr 9
allele count: 2
allele frequency: 1.667333600106709e-5
allele num: 119952
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.939C>T
  hgvsp: ENST00000371757.2:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.939C>T
  hgvsp: ENST00000298480.5:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.840C>T
  hgvsp: ENST00000491806.2:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.882C>T
  hgvsp: ENST00000490355.2:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.822C>T
  hgvsp: ENST00000486577.2:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.882C>T
  hgvsp: ENST00000263604.3:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.804C>T
  hgvsp: ENST00000487664.1:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.882C>T
  hgvsp: ENST00000488444.2:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*549C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.758C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.780C>T
  hgvsp: ENST00000473941.1:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser313Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

9-138651612-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651612
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651612
    reference: chr 9
allele count: 38
allele frequency: 3.168779186124083e-4
allele num: 119920
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.942C>T
  hgvsp: ENST00000371757.2:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.885C>T
  hgvsp: ENST00000490355.2:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*552C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.885C>T
  hgvsp: ENST00000263604.3:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.843C>T
  hgvsp: ENST00000491806.2:c.843C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.783C>T
  hgvsp: ENST00000473941.1:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.885C>T
  hgvsp: ENST00000488444.2:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.825C>T
  hgvsp: ENST00000486577.2:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.942C>T
  hgvsp: ENST00000298480.5:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.807C>T
  hgvsp: ENST00000487664.1:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.761C>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18952
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Thr314Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

9-138651613-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651613
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651613
    reference: chr 9
allele count: 1
allele frequency: 8.338892595063375e-6
allele num: 119920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.943G>A
  hgvsp: ENSP00000298480.5:p.Val315Met
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.943G>A
  hgvsp: ENSP00000360822.2:p.Val315Met
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.826G>A
  hgvsp: ENSP00000417578.2:p.Val276Met
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.886G>A
  hgvsp: ENSP00000418003.2:p.Val296Met
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.844G>A
  hgvsp: ENSP00000419086.2:p.Val282Met
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.784G>A
  hgvsp: ENSP00000420764.1:p.Val262Met
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.886G>A
  hgvsp: ENSP00000419007.2:p.Val296Met
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.762G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.808G>A
  hgvsp: ENSP00000417851.1:p.Val270Met
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.886G>A
  hgvsp: ENSP00000263604.3:p.Val296Met
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*553G>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val315Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

9-138651621-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651621
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651621
    reference: chr 9
allele count: 3
allele frequency: 2.501542617947735e-5
allele num: 119926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.816C>T
  hgvsp: ENST00000487664.1:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.951C>T
  hgvsp: ENST00000371757.2:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.894C>T
  hgvsp: ENST00000488444.2:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.894C>T
  hgvsp: ENST00000490355.2:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.792C>T
  hgvsp: ENST00000473941.1:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.834C>T
  hgvsp: ENST00000486577.2:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.770C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.951C>T
  hgvsp: ENST00000298480.5:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.852C>T
  hgvsp: ENST00000491806.2:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*561C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.894C>T
  hgvsp: ENST00000263604.3:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr317Tyr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

9-138651627-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651627
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651627
    reference: chr 9
allele count: 13
allele frequency: 1.084490122797651e-4
allele num: 119872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.900C>T
  hgvsp: ENST00000488444.2:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.900C>T
  hgvsp: ENST00000490355.2:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*567C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.957C>T
  hgvsp: ENST00000371757.2:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.858C>T
  hgvsp: ENST00000491806.2:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.957C>T
  hgvsp: ENST00000298480.5:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.798C>T
  hgvsp: ENST00000473941.1:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.822C>T
  hgvsp: ENST00000487664.1:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.840C>T
  hgvsp: ENST00000486577.2:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.776C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.900C>T
  hgvsp: ENST00000263604.3:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp319Asp
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

9-138651628-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651628
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651628
    reference: chr 9
allele count: 3
allele frequency: 2.503296006408438e-5
allele num: 119842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.958G>A
  hgvsp: ENSP00000298480.5:p.Val320Ile
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.799G>A
  hgvsp: ENSP00000420764.1:p.Val267Ile
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.901G>A
  hgvsp: ENSP00000263604.3:p.Val301Ile
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.841G>A
  hgvsp: ENSP00000417578.2:p.Val281Ile
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.823G>A
  hgvsp: ENSP00000417851.1:p.Val275Ile
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*568G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.901G>A
  hgvsp: ENSP00000418003.2:p.Val301Ile
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.859G>A
  hgvsp: ENSP00000419086.2:p.Val287Ile
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.901G>A
  hgvsp: ENSP00000419007.2:p.Val301Ile
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.777G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.958G>A
  hgvsp: ENSP00000360822.2:p.Val320Ile
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val320Ile
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

9-138651633-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651633
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651633
    reference: chr 9
allele count: 6
allele frequency: 5.007929221267006e-5
allele num: 119810
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.963G>A
  hgvsp: ENST00000371757.2:c.963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.906G>A
  hgvsp: ENST00000490355.2:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.906G>A
  hgvsp: ENST00000488444.2:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*573G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.846G>A
  hgvsp: ENST00000486577.2:c.846G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.828G>A
  hgvsp: ENST00000487664.1:c.828G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.864G>A
  hgvsp: ENST00000491806.2:c.864G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.906G>A
  hgvsp: ENST00000263604.3:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.963G>A
  hgvsp: ENST00000298480.5:c.963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.782G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.804G>A
  hgvsp: ENST00000473941.1:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr321Thr
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

9-138651644-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651644
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651644
    reference: chr 9
allele count: 1
allele frequency: 8.368761088608442e-6
allele num: 119492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.839G>A
  hgvsp: ENSP00000417851.1:p.Trp280Ter
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.917G>A
  hgvsp: ENSP00000263604.3:p.Trp306Ter
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.974G>A
  hgvsp: ENSP00000360822.2:p.Trp325Ter
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.974G>A
  hgvsp: ENSP00000298480.5:p.Trp325Ter
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.815G>A
  hgvsp: ENSP00000420764.1:p.Trp272Ter
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.917G>A
  hgvsp: ENSP00000418003.2:p.Trp306Ter
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.917G>A
  hgvsp: ENSP00000419007.2:p.Trp306Ter
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.875G>A
  hgvsp: ENSP00000419086.2:p.Trp292Ter
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.857G>A
  hgvsp: ENSP00000417578.2:p.Trp286Ter
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*584G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.793G>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp325Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

9-138651647-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651647
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651647
    reference: chr 9
allele count: 1
allele frequency: 8.376612497905846e-6
allele num: 119380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.920C>T
  hgvsp: ENSP00000419007.2:p.Pro307Leu
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.860C>T
  hgvsp: ENSP00000417578.2:p.Pro287Leu
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*587C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.818C>T
  hgvsp: ENSP00000420764.1:p.Pro273Leu
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.977C>T
  hgvsp: ENSP00000298480.5:p.Pro326Leu
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.842C>T
  hgvsp: ENSP00000417851.1:p.Pro281Leu
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.977C>T
  hgvsp: ENSP00000360822.2:p.Pro326Leu
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.920C>T
  hgvsp: ENSP00000418003.2:p.Pro307Leu
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.920C>T
  hgvsp: ENSP00000263604.3:p.Pro307Leu
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.878C>T
  hgvsp: ENSP00000419086.2:p.Pro293Leu
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.796C>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro326Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

9-138651648-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651648
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651648
    reference: chr 9
allele count: 943
allele frequency: 7.902058054568614e-3
allele num: 119336
alternate allele: G
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.861A>G
  hgvsp: ENST00000486577.2:c.861A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.921A>G
  hgvsp: ENST00000490355.2:c.921A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.921A>G
  hgvsp: ENST00000263604.3:c.921A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*588A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.819A>G
  hgvsp: ENST00000473941.1:c.819A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.978A>G
  hgvsp: ENST00000298480.5:c.978A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.978A>G
  hgvsp: ENST00000371757.2:c.978A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.797A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.843A>G
  hgvsp: ENST00000487664.1:c.843A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.921A>G
  hgvsp: ENST00000488444.2:c.921A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.879A>G
  hgvsp: ENST00000491806.2:c.879A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 18769
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 34887
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Pro326Pro
num of homozygotes: 33
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

9-138651651-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651651
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651651
    reference: chr 9
allele count: 12
allele frequency: 1.00733676947098e-4
allele num: 119126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.924G>A
  hgvsp: ENST00000488444.2:c.924G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.800G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.864G>A
  hgvsp: ENST00000486577.2:c.864G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.882G>A
  hgvsp: ENST00000491806.2:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*591G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.981G>A
  hgvsp: ENST00000298480.5:c.981G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.822G>A
  hgvsp: ENST00000473941.1:c.822G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.981G>A
  hgvsp: ENST00000371757.2:c.981G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.924G>A
  hgvsp: ENST00000490355.2:c.924G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.924G>A
  hgvsp: ENST00000263604.3:c.924G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.846G>A
  hgvsp: ENST00000487664.1:c.846G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser327Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

9-138651655-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651655
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651655
    reference: chr 9
allele count: 40
allele frequency: 3.362700921380052e-4
allele num: 118952
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.985C>T
  hgvsp: ENST00000371757.2:c.985C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.850C>T
  hgvsp: ENST00000487664.1:c.850C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.928C>T
  hgvsp: ENST00000488444.2:c.928C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.804C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.928C>T
  hgvsp: ENST00000263604.3:c.928C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.826C>T
  hgvsp: ENST00000473941.1:c.826C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.928C>T
  hgvsp: ENST00000490355.2:c.928C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*595C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.868C>T
  hgvsp: ENST00000486577.2:c.868C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.985C>T
  hgvsp: ENST00000298480.5:c.985C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.886C>T
  hgvsp: ENST00000491806.2:c.886C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 34584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19155
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu329Leu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

9-138651666-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651666
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651666
    reference: chr 9
allele count: 1
allele frequency: 8.480469478790345e-6
allele num: 117918
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.996C>T
  hgvsp: ENST00000371757.2:c.996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*606C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.897C>T
  hgvsp: ENST00000491806.2:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.939C>T
  hgvsp: ENST00000488444.2:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.815C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.939C>T
  hgvsp: ENST00000263604.3:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.939C>T
  hgvsp: ENST00000490355.2:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.837C>T
  hgvsp: ENST00000473941.1:c.837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.996C>T
  hgvsp: ENST00000298480.5:c.996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.879C>T
  hgvsp: ENST00000486577.2:c.879C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.861C>T
  hgvsp: ENST00000487664.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val332Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-138651669-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651669
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651669
    reference: chr 9
allele count: 2
allele frequency: 1.70590242238144e-5
allele num: 117240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*609C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.942C>T
  hgvsp: ENST00000490355.2:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.840C>T
  hgvsp: ENST00000473941.1:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.900C>T
  hgvsp: ENST00000491806.2:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.942C>T
  hgvsp: ENST00000263604.3:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.999C>T
  hgvsp: ENST00000298480.5:c.999C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.882C>T
  hgvsp: ENST00000486577.2:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.864C>T
  hgvsp: ENST00000487664.1:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.999C>T
  hgvsp: ENST00000371757.2:c.999C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.942C>T
  hgvsp: ENST00000488444.2:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.818C>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile333Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

9-138651678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651678
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651678
    reference: chr 9
allele count: 71
allele frequency: 6.176920935412027e-4
allele num: 114944
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.827C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1008C>T
  hgvsp: ENST00000298480.5:c.1008C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.849C>T
  hgvsp: ENST00000473941.1:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*618C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.951C>T
  hgvsp: ENST00000488444.2:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.891C>T
  hgvsp: ENST00000486577.2:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.951C>T
  hgvsp: ENST00000490355.2:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.951C>T
  hgvsp: ENST00000263604.3:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.873C>T
  hgvsp: ENST00000487664.1:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1008C>T
  hgvsp: ENST00000371757.2:c.1008C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.909C>T
  hgvsp: ENST00000491806.2:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31002
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18180
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
hgvs: p.Cys336Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

9-138651683-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651683
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651683
    reference: chr 9
allele count: 1
allele frequency: 8.727221950708651e-6
allele num: 114584
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1013C>T
  hgvsp: ENSP00000298480.5:p.Ala338Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.956C>T
  hgvsp: ENSP00000419007.2:p.Ala319Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.956C>T
  hgvsp: ENSP00000418003.2:p.Ala319Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1013C>T
  hgvsp: ENSP00000360822.2:p.Ala338Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.896C>T
  hgvsp: ENSP00000417578.2:p.Ala299Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.914C>T
  hgvsp: ENSP00000419086.2:p.Ala305Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*623C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000420764
  ensembl transcript: ENST00000473941
  gene symbol: KCNT1
  hgvsc: ENST00000473941.1:c.854C>T
  hgvsp: ENSP00000420764.1:p.Ala285Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.878C>T
  hgvsp: ENSP00000417851.1:p.Ala293Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.956C>T
  hgvsp: ENSP00000263604.3:p.Ala319Val
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.832C>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala338Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

9-138651688-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651688
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651688
    reference: chr 9
allele count: 1
allele frequency: 8.777627582816916e-6
allele num: 113926
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.961G>C
  hgvsp: ENSP00000419007.2:p.Val321Leu
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.961G>C
  hgvsp: ENSP00000263604.3:p.Val321Leu
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.919G>C
  hgvsp: ENSP00000419086.2:p.Val307Leu
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.901G>C
  hgvsp: ENSP00000417578.2:p.Val301Leu
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1018G>C
  hgvsp: ENSP00000360822.2:p.Val340Leu
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1018G>C
  hgvsp: ENSP00000298480.5:p.Val340Leu
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.961G>C
  hgvsp: ENSP00000418003.2:p.Val321Leu
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.837G>C
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*628G>C
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.883G>C
  hgvsp: ENSP00000417851.1:p.Val295Leu
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val340Leu
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

9-138651690-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651690
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651690
    reference: chr 9
allele count: 1
allele frequency: 8.802042073761113e-6
allele num: 113610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.903G>A
  hgvsp: ENST00000486577.2:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.963G>A
  hgvsp: ENST00000490355.2:c.963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.839G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.963G>A
  hgvsp: ENST00000263604.3:c.963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*630G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1020G>A
  hgvsp: ENST00000298480.5:c.1020G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.963G>A
  hgvsp: ENST00000488444.2:c.963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.885G>A
  hgvsp: ENST00000487664.1:c.885G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.921G>A
  hgvsp: ENST00000491806.2:c.921G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1020G>A
  hgvsp: ENST00000371757.2:c.1020G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5418
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val340Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

9-138651699-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651699
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651699
    reference: chr 9
allele count: 3
allele frequency: 2.685092367177431e-5
allele num: 111728
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.972A>G
  hgvsp: ENST00000488444.2:c.972A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.894A>G
  hgvsp: ENST00000487664.1:c.894A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.972A>G
  hgvsp: ENST00000263604.3:c.972A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.912A>G
  hgvsp: ENST00000486577.2:c.912A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*639A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1029A>G
  hgvsp: ENST00000371757.2:c.1029A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.930A>G
  hgvsp: ENST00000491806.2:c.930A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.972A>G
  hgvsp: ENST00000490355.2:c.972A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1029A>G
  hgvsp: ENST00000298480.5:c.1029A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.848A>G
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17382
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6744
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro343Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

9-138651706-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651706
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651706
    reference: chr 9
allele count: 2
allele frequency: 1.816959499972745e-5
allele num: 110074
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+1G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+1G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+1G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+1G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+1G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+1G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+1G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+1G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+1G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+1G>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27064
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1035+1G>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

9-138651710-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651710
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651710
    reference: chr 9
allele count: 1
allele frequency: 9.178522257916476e-6
allele num: 108950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+5G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+5G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+5G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+5G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+5G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+5G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+5G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+5G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+5G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+5G>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16349
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8944
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1035+5G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum

9-138651718-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651718
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651718
    reference: chr 9
allele count: 1
allele frequency: 9.364698831285586e-6
allele num: 106784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+13G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+13G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+13G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+13G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+13G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+13G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+13G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+13G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+13G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+13G>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22352
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2573
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

9-138651722-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651722
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651722
    reference: chr 9
allele count: 1
allele frequency: 9.486945962355799e-6
allele num: 105408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+17C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+17C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+17C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+17C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+17C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+17C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+17C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+17C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+17C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+17C>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13631
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/9-138651726-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651726
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651726
    reference: chr 9
allele count: 2
allele frequency: 1.923187876223628e-5
allele num: 103994
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+21C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+21C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+21C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+21C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+21C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+21C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+21C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+21C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+21C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+21C>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12061
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3644
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25151
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

9-138651732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651732
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651732
    reference: chr 9
allele count: 4
allele frequency: 3.887949301141113e-5
allele num: 102882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+27G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+27G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+27G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+27G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+27G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+27G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+27G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+27G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+27G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+27G>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4363
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

9-138651734-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651734
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651734
    reference: chr 9
allele count: 1
allele frequency: 9.762764814995607e-6
allele num: 102430
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+29G>C
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+29G>C
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+29G>C
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+29G>C
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+29G>C
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+29G>C
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+29G>C
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+29G>C
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+29G>C
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+29G>C
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6279
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-138651735-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651735
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651735
    reference: chr 9
allele count: 1
allele frequency: 9.792017547295445e-6
allele num: 102124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+30G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+30G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+30G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+30G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+30G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+30G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+30G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+30G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+30G>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+30G>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8018
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18354
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3876
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15203
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-138651737-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651737
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651737
    reference: chr 9
allele count: 42
allele frequency: 4.12573673870334e-4
allele num: 101800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+32A>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+32A>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+32A>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+32A>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+32A>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+32A>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+32A>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+32A>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+32A>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+32A>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8854
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18920
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12116
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7028
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8583
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ

9-138651738-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651738
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651738
    reference: chr 9
allele count: 1
allele frequency: 9.852216748768473e-6
allele num: 101500
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+33C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+33C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+33C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+33C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+33C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+33C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+33C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+33C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+33C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+33C>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9458
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7071
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15331
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4491
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

9-138651739-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651739
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651739
    reference: chr 9
allele count: 2
allele frequency: 1.978161101440101e-5
allele num: 101104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+34C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+34C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+34C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+34C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+34C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+34C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+34C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+34C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+34C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+34C>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10121
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10845
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

9-138651745-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651745
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651744
    reference: chr 9
allele count: 8
allele frequency: 8.086198880061455e-5
allele num: 98934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+43delG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+43delG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+43delG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+43delG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+43delG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+43delG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+43delG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+43delG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+43delG
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+43delG
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19432
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15690
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7886
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8684
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: AG
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

9-138651749-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651749
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651749
    reference: chr 9
allele count: 2
allele frequency: 2.071937676114703e-5
allele num: 96528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+44A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+44A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+44A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+44A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+44A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+44A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+44A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+44A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+44A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+44A>G
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18695
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8928
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5677
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13092
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

9-138651753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651753
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651753
    reference: chr 9
allele count: 1
allele frequency: 1.064645260199302e-5
allele num: 93928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+48G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+48G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+48G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+48G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+48G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+48G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+48G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+48G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+48G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+48G>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18060
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15873
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4311
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

9-138651754-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651754
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651754
    reference: chr 9
allele count: 2
allele frequency: 2.147674068983291e-5
allele num: 93124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+49C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+49C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+49C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+49C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+49C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+49C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+49C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+49C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+49C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+49C>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18074
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15828
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-138651754-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651754
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651754
    reference: chr 9
allele count: 1
allele frequency: 1.073837034491646e-5
allele num: 93124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+49C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+49C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+49C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+49C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+49C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+49C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+49C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+49C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+49C>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+49C>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9897
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18074
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15828
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3418
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

9-138651755-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651755
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651755
    reference: chr 9
allele count: 10
allele frequency: 1.078981441519206e-4
allele num: 92680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+50G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+50G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+50G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+50G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+50G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+50G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+50G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+50G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+50G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+50G>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8543
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18001
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15730
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4132
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

9-138651757-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138651757
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138651757
    reference: chr 9
allele count: 1
allele frequency: 1.083752384255245e-5
allele num: 92272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.978+52G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.936+52G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1035+52G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*645+52G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.978+52G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.918+52G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.854+52G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.900+52G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.978+52G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1035+52G>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17950
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5571
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4520
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

9-138656830-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138656830
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138656830
    reference: chr 9
allele count: 3
allele frequency: 3.666585186995845e-5
allele num: 81820
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.901-47C>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.979-47C>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1036-47C>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.855-47C>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1036-47C>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.979-47C>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.937-47C>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.919-47C>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.979-47C>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*646-47C>G
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10437
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13696
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

9-138656831-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138656831
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138656831
    reference: chr 9
allele count: 9
allele frequency: 1.093825960136121e-4
allele num: 82280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.919-46G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.855-46G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.937-46G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.979-46G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.901-46G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.979-46G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1036-46G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.979-46G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1036-46G>A
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*646-46G>A
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20953
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9943
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

9-138656837-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138656837
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138656837
    reference: chr 9
allele count: 2
allele frequency: 2.392115587025165e-5
allele num: 83608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.979-40C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1036-40C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.979-40C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.937-40C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.979-40C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1036-40C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*646-40C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.855-40C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.901-40C>T
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.919-40C>T
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20560
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7348
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15932
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

9-138656838-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138656838
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 138656838
    reference: chr 9
allele count: 20638
allele frequency: 2.324203792963647e-1
allele num: 88796
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419086
  ensembl transcript: ENST00000491806
  gene symbol: KCNT1
  hgvsc: ENST00000491806.2:c.937-39A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000298480
  ensembl transcript: ENST00000298480
  gene symbol: KCNT1
  hgvsc: ENST00000298480.5:c.1036-39A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000263604
  ensembl transcript: ENST00000263604
  gene symbol: KCNT1
  hgvsc: ENST00000263604.3:c.979-39A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418003
  ensembl transcript: ENST00000490355
  gene symbol: KCNT1
  hgvsc: ENST00000490355.2:c.979-39A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417851
  ensembl transcript: ENST00000487664
  gene symbol: KCNT1
  hgvsc: ENST00000487664.1:c.901-39A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl transcript: ENST00000490363
  gene symbol: KCNT1
  hgvsc: ENST00000490363.1:n.855-39A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000417578
  ensembl transcript: ENST00000486577
  gene symbol: KCNT1
  hgvsc: ENST00000486577.2:c.919-39A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000419007
  ensembl transcript: ENST00000488444
  gene symbol: KCNT1
  hgvsc: ENST00000488444.2:c.979-39A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000418777
  ensembl transcript: ENST00000460750
  gene symbol: KCNT1
  hgvsc: ENST00000460750.1:c.*646-39A>G
  variant of: http://identifiers.org/hgnc/18865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107147
  ensembl protein: ENSP00000360822
  ensembl transcript: ENST00000371757
  gene symbol: KCNT1
  hgvsc: ENST00000371757.2:c.1036-39A>G
  variant of: http://identifiers.org/hgnc/18865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 12835
  bin: 7.5e0
  variant carriers: 2794
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 8698
  bin: 2.25e1
  variant carriers: 2948
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.75e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.25e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 2.75e1
  variant carriers: 1142
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.25e1
  variant carriers: 468
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 2.5e0
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 10584
  bin: 1.75e1
  variant carriers: 5694
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 19713
  bin: 1.25e1
  variant carriers: 6867
genotype quality: GenotypeQuality
  all individuals: 3702
  bin: 2.75e1
  variant carriers: 230
genotype quality: GenotypeQuality
  all individuals: 5761
  bin: 6.25e1
  variant carriers: 380
genotype quality: GenotypeQuality
  all individuals: 5717
  bin: 3.25e1
  variant carriers: 408
num of homozygotes: 2245
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

GenotypeQuality
all individuals: 120
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 431
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13794
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3816
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5085
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11666
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 818
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7736
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.828599292941607e-4
allele num: 16406
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.716284492809949e-5
allele num: 10292
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.695652173913044e-5
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65848
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.479e1

FS
type: SiteQuality
SIO_000300: 2.787e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 2.004749e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.14e0

GenotypeQuality
all individuals: 120
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7736
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5085
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3816
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13794
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518649009840846e-5
allele num: 65848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.716284492809949e-5
allele num: 10292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

DP
type: SiteQuality
SIO_000300: 2.004749e6

MQ
type: SiteQuality
SIO_000300: 5.939e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

QD
type: SiteQuality
SIO_000300: 1.479e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

FS
type: SiteQuality
SIO_000300: 2.787e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

GenotypeQuality
all individuals: 7679
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4116
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13226
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3799
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5078
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11665
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.692628650904033e-5
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.305e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

DP
type: SiteQuality
SIO_000300: 2.001861e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e0

QD
type: SiteQuality
SIO_000300: 1.456e1

VQSLOD
type: SiteQuality
SIO_000300: 5.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 902
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13339
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4735
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7358
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5439
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1696
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3366
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5449
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2704
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3544
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.636e0

QD
type: SiteQuality
SIO_000300: 3.325e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.026559e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 1685
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7496
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5414
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3584
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2840
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4585
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2613
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2677
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5377
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 742
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 496
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3341
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.283547257876313e-3
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5170
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.769e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

DP
type: SiteQuality
SIO_000300: 1.031556e6

VQSLOD
type: SiteQuality
SIO_000300: 4.79e0

QD
type: SiteQuality
SIO_000300: 1.232e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-2

GenotypeQuality
all individuals: 2840
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4585
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2613
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 882
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1685
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13943
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3584
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3341
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2677
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 815
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1865
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7496
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5414
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 9.75e1
variant carriers: 65

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.846722068328717e-5
allele num: 54150
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.597444089456869e-3
allele num: 626
num of homozygotes: 0

East Asian
type: Population
allele count: 56
allele frequency: 7.688083470620538e-3
allele num: 7284
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 9.321836401771149e-4
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.769e0

DP
type: SiteQuality
SIO_000300: 1.031556e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.232e1

GenotypeQuality
all individuals: 1924
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 595
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7966
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1560
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3296
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 15758
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5320
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1561
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2718
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 3602
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2741
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 895
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 881
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4028
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5332
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 5.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.352941176470588e-5
allele num: 54400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 2.123552123552124e-3
allele num: 5180
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.5625e-3
allele num: 640
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.854e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

FS
type: SiteQuality
SIO_000300: 1.5058e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

DP
type: SiteQuality
SIO_000300: 1.040388e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

QD
type: SiteQuality
SIO_000300: 1.367e1

GenotypeQuality
all individuals: 752
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2928
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9154
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22624
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
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variant carriers: 0

GenotypeQuality
all individuals: 4753
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3226
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1714
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3055
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55172
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.141291942478886e-4
allele num: 8762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

QD
type: SiteQuality
SIO_000300: 1.828e1

DP
type: SiteQuality
SIO_000300: 1.091614e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.242e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 754
bin: 5.25e1
variant carriers: 129

GenotypeQuality
all individuals: 852
bin: 1.25e1
variant carriers: 42

GenotypeQuality
all individuals: 7777
bin: 2.25e1
variant carriers: 85

GenotypeQuality
all individuals: 661
bin: 7.75e1
variant carriers: 166

GenotypeQuality
all individuals: 3247
bin: 3.75e1
variant carriers: 73

GenotypeQuality
all individuals: 835
bin: 2.5e0
variant carriers: 16

GenotypeQuality
all individuals: 2281
bin: 6.75e1
variant carriers: 116

GenotypeQuality
all individuals: 706
bin: 1.75e1
variant carriers: 68

GenotypeQuality
all individuals: 2686
bin: 7.5e0
variant carriers: 32

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 116

GenotypeQuality
all individuals: 2457
bin: 2.75e1
variant carriers: 53

GenotypeQuality
all individuals: 1490
bin: 4.75e1
variant carriers: 110

GenotypeQuality
all individuals: 3734
bin: 3.25e1
variant carriers: 57

GenotypeQuality
all individuals: 9272
bin: 9.75e1
variant carriers: 8942

GenotypeQuality
all individuals: 20011
bin: 6.25e1
variant carriers: 120

GenotypeQuality
all individuals: 530
bin: 5.75e1
variant carriers: 94

GenotypeQuality
all individuals: 426
bin: 8.25e1
variant carriers: 151

GenotypeQuality
all individuals: 734
bin: 7.25e1
variant carriers: 125

GenotypeQuality
all individuals: 220
bin: 9.25e1
variant carriers: 106

Other
type: Population
allele count: 49
allele frequency: 7.469512195121951e-2
allele num: 656
num of homozygotes: 1

East Asian
type: Population
allele count: 1960
allele frequency: 2.56611678449856e-1
allele num: 7638
num of homozygotes: 237

African
type: Population
allele count: 1355
allele frequency: 1.53349932095971e-1
allele num: 8836
num of homozygotes: 104

Latino
type: Population
allele count: 1510
allele frequency: 1.462894787831815e-1
allele num: 10322
num of homozygotes: 106

South Asian
type: Population
allele count: 1013
allele frequency: 1.129319955406912e-1
allele num: 8970
num of homozygotes: 56

European (Non-Finnish)
type: Population
allele count: 4370
allele frequency: 7.850957565304875e-2
allele num: 55662
num of homozygotes: 173

European (Finnish)
type: Population
allele count: 264
allele frequency: 4.977375565610859e-2
allele num: 5304
num of homozygotes: 6

QD
type: SiteQuality
SIO_000300: 1.442e1

VQSLOD
type: SiteQuality
SIO_000300: 5.74e0

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.898e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.23e-2

DP
type: SiteQuality
SIO_000300: 1.137814e6

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 550
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37532
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 952
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7461
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1646
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 296
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3736
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

Latino
type: Population
allele count: 33
allele frequency: 3.033088235294118e-3
allele num: 10880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.691589417416605e-5
allele num: 59116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5604
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.482e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.85e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.131e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e-1

DP
type: SiteQuality
SIO_000300: 1.258834e6

GenotypeQuality
all individuals: 970
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38102
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3799
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 819
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9340
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.416626389560174e-4
allele num: 8276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59490
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.416e0

MQRankSum
type: SiteQuality
SIO_000300: 5.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

QD
type: SiteQuality
SIO_000300: 1.27e1

VQSLOD
type: SiteQuality
SIO_000300: 6.66e-1

DP
type: SiteQuality
SIO_000300: 1.272761e6

GenotypeQuality
all individuals: 192
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3799
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38102
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.680954782316356e-5
allele num: 59490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5656
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

DP
type: SiteQuality
SIO_000300: 1.272761e6

VQSLOD
type: SiteQuality
SIO_000300: 6.66e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

FS
type: SiteQuality
SIO_000300: 3.416e0

MQRankSum
type: SiteQuality
SIO_000300: 5.82e-1

GenotypeQuality
all individuals: 1328
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6774
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variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.5e0
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GenotypeQuality
all individuals: 226
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 129
bin: 5.75e1
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GenotypeQuality
all individuals: 996
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4010
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40681
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.657660047077545e-5
allele num: 60326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: -2.2e-3

BaseQRankSum
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ReadPosRankSum
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SIO_000300: 6.900000000000001e-2

QD
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VQSLOD
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SIO_000300: 5.54e-1

MQRankSum
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SIO_000300: 1.67e0

DP
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SIO_000300: 1.294748e6

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.205230936889003e-5
allele num: 62398
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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QD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 8.869966294128082e-5
allele num: 11274
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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SIO_000300: 2.19e0

MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: -9.98e-1

ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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FS
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BaseQRankSum
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SIO_000300: -8.81e-1

QD
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SIO_000300: 1.317e1

DP
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SIO_000300: 1.356567e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.571981010469394e-5
allele num: 63614
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.785802143735723e-5
allele num: 11382
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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QD
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ClippingRankSum
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FS
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: -3.22e-1

BaseQRankSum
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SIO_000300: -2.151e0

DP
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SIO_000300: 1.385204e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

African
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allele frequency: 2.983293556085919e-4
allele num: 10056
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 1.207729468599034e-3
allele num: 828
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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QD
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FS
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 64866
num of homozygotes: 0

East Asian
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allele frequency: 3.489183531053733e-4
allele num: 8598
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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QD
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DP
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.541164503899146e-5
allele num: 64886
num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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MQ
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FS
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BaseQRankSum
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MQRankSum
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DP
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VQSLOD
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 7.836990595611285e-4
allele num: 11484
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East Asian
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European (Finnish)
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QD
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MQ
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MQRankSum
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FS
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DP
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: -2.007e0

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.61e-1

GenotypeDepth
all individuals: 23
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 173
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49434
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1664
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
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GenotypeQuality
all individuals: 217
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
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variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4794
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variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 9.75e1
variant carriers: 76

GenotypeQuality
all individuals: 224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 43
allele frequency: 6.590038314176245e-4
allele num: 65250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.576789656259855e-4
allele num: 6342
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.149425287356322e-3
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.963093835885355e-4
allele num: 10188
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.996539331824837e-4
allele num: 15026
num of homozygotes: 0

Latino
type: Population
allele count: 26
allele frequency: 2.261656228253305e-3
allele num: 11496
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 1.44323e6

FS
type: SiteQuality
SIO_000300: 5.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 145
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variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
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GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 189
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variant carriers: 0

GenotypeQuality
all individuals: 478
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GenotypeQuality
all individuals: 1428
bin: 2.25e1
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GenotypeQuality
all individuals: 961
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variant carriers: 0

GenotypeQuality
all individuals: 107
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variant carriers: 0

GenotypeQuality
all individuals: 4819
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variant carriers: 0

GenotypeQuality
all individuals: 49750
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15316
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

DP
type: SiteQuality
SIO_000300: 1.445913e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.185e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 8.210000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -6.348e-1

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
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variant carriers: 0

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 483
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50045
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
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GenotypeQuality
all individuals: 1203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
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variant carriers: 2

GenotypeQuality
all individuals: 177
bin: 3.25e1
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GenotypeQuality
all individuals: 195
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
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GenotypeQuality
all individuals: 966
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variant carriers: 0

GenotypeQuality
all individuals: 148
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variant carriers: 0

GenotypeQuality
all individuals: 4864
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.692628650904033e-5
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528257480820369e-5
allele num: 65434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.44819e6

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.098e0

FS
type: SiteQuality
SIO_000300: 2.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

QD
type: SiteQuality
SIO_000300: 9.76e0

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50546
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
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variant carriers: 1

GenotypeQuality
all individuals: 1211
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
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variant carriers: 0

GenotypeQuality
all individuals: 966
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variant carriers: 0

GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 144
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variant carriers: 0

GenotypeQuality
all individuals: 4888
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 166
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variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522579859313621e-5
allele num: 65678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15994
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.13e-1

DP
type: SiteQuality
SIO_000300: 1.458615e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

FS
type: SiteQuality
SIO_000300: 4.821e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 9.9e0

MQRankSum
type: SiteQuality
SIO_000300: -7.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.565e0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 137
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GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 65
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GenotypeQuality
all individuals: 171
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variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
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GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 51073
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GenotypeQuality
all individuals: 4938
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GenotypeQuality
all individuals: 968
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variant carriers: 0

GenotypeQuality
all individuals: 476
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 481
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.464463e6

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.028e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.165e1

FS
type: SiteQuality
SIO_000300: 4.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.23e0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 143
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variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
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GenotypeQuality
all individuals: 51163
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
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GenotypeQuality
all individuals: 971
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variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1225
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variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 7.5e0
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GenotypeQuality
all individuals: 30
bin: 4.75e1
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GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
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GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 4934
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.725734292939116e-5
allele num: 10282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

FS
type: SiteQuality
SIO_000300: 7.19e-1

QD
type: SiteQuality
SIO_000300: 1.12e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

DP
type: SiteQuality
SIO_000300: 1.465908e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.78e-1

GenotypeDepth
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 173
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
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GenotypeQuality
all individuals: 652
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 143
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variant carriers: 0

GenotypeQuality
all individuals: 471
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variant carriers: 0

GenotypeQuality
all individuals: 51169
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 4934
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GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518187890933382e-5
allele num: 65868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.449e0

DP
type: SiteQuality
SIO_000300: 1.465938e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.361e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.38e-1

QD
type: SiteQuality
SIO_000300: 1.117e1

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
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variant carriers: 0

GenotypeQuality
all individuals: 1214
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 64
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GenotypeQuality
all individuals: 174
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GenotypeQuality
all individuals: 51090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
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GenotypeQuality
all individuals: 633
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.104260774020266e-5
allele num: 16382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65874
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.058e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
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SIO_000300: -1.788e0

QD
type: SiteQuality
SIO_000300: 2.464e1

FS
type: SiteQuality
SIO_000300: 3.431e0

ReadPosRankSum
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SIO_000300: 6.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.05e-1

DP
type: SiteQuality
SIO_000300: 1.466698e6

MQ
type: SiteQuality
SIO_000300: 5.927e1

GenotypeDepth
all individuals: 7
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 515
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variant carriers: 38

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 469
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4929
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variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 3.947528240009717e-4
allele num: 65864
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.861921431349669e-4
allele num: 10284
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.829627309740056e-4
allele num: 6386
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: 4.45e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
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SIO_000300: 1.468314e6

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

InbreedingCoeff
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SIO_000300: 3.3e-3

FS
type: SiteQuality
SIO_000300: 5.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

QD
type: SiteQuality
SIO_000300: 1.271e1

GenotypeDepth
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 136
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GenotypeQuality
all individuals: 172
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 468
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GenotypeQuality
all individuals: 4931
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GenotypeQuality
all individuals: 42
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GenotypeQuality
all individuals: 967
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variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51846452866861e-5
allele num: 65856
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.184e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

BaseQRankSum
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SIO_000300: -1.05e0

FS
type: SiteQuality
SIO_000300: 9.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

DP
type: SiteQuality
SIO_000300: 1.466694e6

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

GenotypeDepth
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 50986
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variant carriers: 0

GenotypeQuality
all individuals: 714
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variant carriers: 0

GenotypeQuality
all individuals: 63
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GenotypeQuality
all individuals: 962
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variant carriers: 0

GenotypeQuality
all individuals: 4917
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variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 172
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variant carriers: 0

GenotypeQuality
all individuals: 1207
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variant carriers: 0

GenotypeQuality
all individuals: 137
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 81
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GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 144
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GenotypeQuality
all individuals: 484
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variant carriers: 3

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.716284492809949e-5
allele num: 10292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51828009231143e-5
allele num: 65864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.142e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 4.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

DP
type: SiteQuality
SIO_000300: 1.466283e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.003e0

GenotypeDepth
all individuals: 3
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variant carriers: 1

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 4913
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 170
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GenotypeQuality
all individuals: 144
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 491
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variant carriers: 13

GenotypeQuality
all individuals: 957
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variant carriers: 0

GenotypeQuality
all individuals: 50933
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variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.146788990825688e-3
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.802721088435374e-4
allele num: 10290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.112469437652811e-5
allele num: 16360
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.556639023056594e-5
allele num: 65838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
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SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 5.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-2

MQRankSum
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SIO_000300: 4.3e-1

VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.537e1

DP
type: SiteQuality
SIO_000300: 1.466057e6

MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 490
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1201
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.567398119122257e-4
allele num: 6380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65832
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.738525730180807e-4
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.137e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.801e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

DP
type: SiteQuality
SIO_000300: 1.466088e6

QD
type: SiteQuality
SIO_000300: 1.011e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.49e-1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 959
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.914885347842985e-4
allele num: 10292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.5584391904212e-5
allele num: 65812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele num: 8616
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: 1.3e-3

MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.057e1

DP
type: SiteQuality
SIO_000300: 1.465772e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.360000000000001e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 145
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 142
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GenotypeQuality
all individuals: 461
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GenotypeQuality
all individuals: 95
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4852
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521421616358325e-5
allele num: 65728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.918e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

VQSLOD
type: SiteQuality
SIO_000300: -1.834e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.56e-1

FS
type: SiteQuality
SIO_000300: 1.256e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.91e-1

DP
type: SiteQuality
SIO_000300: 1.460107e6

QD
type: SiteQuality
SIO_000300: 1.594e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.05e-1

GenotypeDepth
all individuals: 270
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 949
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65694
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.18e-1

DP
type: SiteQuality
SIO_000300: 1.45869e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.248e0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

QD
type: SiteQuality
SIO_000300: 1.134e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeDepth
all individuals: 149
bin: 9.75e1
variant carriers: 146

GenotypeDepth
all individuals: 3284
bin: 3.25e1
variant carriers: 41

GenotypeDepth
all individuals: 73
bin: 6.75e1
variant carriers: 63

GenotypeDepth
all individuals: 582
bin: 3.75e1
variant carriers: 56

GenotypeQuality
all individuals: 1305
bin: 9.75e1
variant carriers: 905

GenotypeQuality
all individuals: 406
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49762
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
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variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4704
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GenotypeQuality
all individuals: 1249
bin: 2.25e1
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GenotypeQuality
all individuals: 171
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 2

Latino
type: Population
allele count: 47
allele frequency: 4.090513489991297e-3
allele num: 11490
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.86799501867995e-4
allele num: 16060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 868
allele frequency: 8.440295604823025e-2
allele num: 10284
num of homozygotes: 32

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.740309959504308e-4
allele num: 65686
num of homozygotes: 1

Other
type: Population
allele count: 7
allele frequency: 8.027522935779817e-3
allele num: 872
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.89e-1

DP
type: SiteQuality
SIO_000300: 1.501805e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.98e-2

FS
type: SiteQuality
SIO_000300: 1.156e0

QD
type: SiteQuality
SIO_000300: 1.414e1

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

GenotypeDepth
all individuals: 830
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1430
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 180
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variant carriers: 0

GenotypeQuality
all individuals: 197
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variant carriers: 0

GenotypeQuality
all individuals: 49946
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variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 111
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variant carriers: 0

GenotypeQuality
all individuals: 4819
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variant carriers: 0

GenotypeQuality
all individuals: 151
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variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.145226191927814e-5
allele num: 65608
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.965405154399814e-4
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.274e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.196e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.85e-1

DP
type: SiteQuality
SIO_000300: 1.4561e6

GenotypeDepth
all individuals: 16
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
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variant carriers: 0

GenotypeQuality
all individuals: 150
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variant carriers: 0

GenotypeQuality
all individuals: 898
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variant carriers: 0

GenotypeQuality
all individuals: 117
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variant carriers: 0

GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 122
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GenotypeQuality
all individuals: 1160
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variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 219
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GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 9.75e1
variant carriers: 40

GenotypeQuality
all individuals: 421
bin: 8.25e1
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GenotypeQuality
all individuals: 134
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GenotypeQuality
all individuals: 4797
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variant carriers: 0

GenotypeQuality
all individuals: 49839
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GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 39
allele frequency: 3.801169590643275e-3
allele num: 10260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65574
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.703220191470844e-5
allele num: 11490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.363e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-1

DP
type: SiteQuality
SIO_000300: 1.454541e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.392e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.78e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4709
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 346
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GenotypeQuality
all individuals: 132
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variant carriers: 0

GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
all individuals: 357
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variant carriers: 0

GenotypeQuality
all individuals: 2474
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variant carriers: 0

GenotypeQuality
all individuals: 101
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GenotypeQuality
all individuals: 116
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GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 411
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GenotypeQuality
all individuals: 878
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GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 1128
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 3.75e1
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GenotypeQuality
all individuals: 151
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GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48768
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.551362683438155e-5
allele num: 15264
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.775e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.495e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.288e-1

DP
type: SiteQuality
SIO_000300: 1.437457e6

MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

MQ
type: SiteQuality
SIO_000300: 5.895e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeDepth
all individuals: 204
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 36
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 88
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GenotypeQuality
all individuals: 405
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GenotypeQuality
all individuals: 445
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GenotypeQuality
all individuals: 281
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GenotypeQuality
all individuals: 4667
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 151
bin: 9.25e1
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GenotypeQuality
all individuals: 47857
bin: 6.25e1
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GenotypeQuality
all individuals: 142
bin: 5.75e1
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GenotypeQuality
all individuals: 415
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1115
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.743983257760725e-4
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.426808e6

QD
type: SiteQuality
SIO_000300: 1.264e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.497e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

FS
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.14e-1

GenotypeDepth
all individuals: 29
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 705
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.5e0
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GenotypeQuality
all individuals: 399
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variant carriers: 0

GenotypeQuality
all individuals: 287
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GenotypeQuality
all individuals: 654
bin: 2.75e1
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GenotypeQuality
all individuals: 584
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GenotypeQuality
all individuals: 4421
bin: 2.25e1
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GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 44755
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GenotypeQuality
all individuals: 84
bin: 1.25e1
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GenotypeQuality
all individuals: 1067
bin: 7.25e1
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GenotypeQuality
all individuals: 397
bin: 8.25e1
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GenotypeQuality
all individuals: 4357
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 477
bin: 9.75e1
variant carriers: 70

East Asian
type: Population
allele count: 63
allele frequency: 7.366697848456501e-3
allele num: 8552
num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 4.412413590233858e-4
allele num: 13598
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6082
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.770391159445712e-5
allele num: 11402
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.877518767285657e-5
allele num: 10124
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.427e1

ClippingRankSum
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SIO_000300: -4.75e-1

VQSLOD
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ReadPosRankSum
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DP
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FS
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64258
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6056
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.456009543692216e-5
allele num: 13412
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

DP
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FS
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQ
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SIO_000300: 5.844e1

VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.965e1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

BaseQRankSum
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SIO_000300: -3.47e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.926543577526305e-5
allele num: 10074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64062
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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SIO_000300: 1.378714e6

BaseQRankSum
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SIO_000300: -2.357e0

InbreedingCoeff
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SIO_000300: 4.0e-4

ClippingRankSum
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SIO_000300: 3.18e-1

FS
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -8.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

QD
type: SiteQuality
SIO_000300: 1.625e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564064064064064e-5
allele num: 63936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12972
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.661e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.262e0

MQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

DP
type: SiteQuality
SIO_000300: 1.374135e6

VQSLOD
type: SiteQuality
SIO_000300: 8.090000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.127e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63178
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.00782033286545e-4
allele num: 9974
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.943e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 1.95e0

InbreedingCoeff
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SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
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QD
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.344761e6

MQ
type: SiteQuality
SIO_000300: 5.453e1

BaseQRankSum
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SIO_000300: 1.77e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5792
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.03179190751445e-5
allele num: 11072
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11724
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African
type: Population
allele count: 1
allele frequency: 1.012965964343598e-4
allele num: 9872
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62474
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
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FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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SIO_000300: -5.224e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 61994
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East Asian
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African
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South Asian
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Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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FS
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ClippingRankSum
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DP
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InbreedingCoeff
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MQ
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 9.25240562546262e-5
allele num: 10808
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European (Finnish)
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European (Non-Finnish)
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Other
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East Asian
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African
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Latino
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.228245e6

BaseQRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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FS
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.045150501672241e-4
allele num: 9568
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.087e0

FS
type: SiteQuality
SIO_000300: 9.041e0

MQRankSum
type: SiteQuality
SIO_000300: -5.02e-1

DP
type: SiteQuality
SIO_000300: 1.181642e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.55e-1

QD
type: SiteQuality
SIO_000300: 1.334e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59634
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.502502502502502e-4
allele num: 7992
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.56e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.18e-1

QD
type: SiteQuality
SIO_000300: 1.132e1

DP
type: SiteQuality
SIO_000300: 1.130465e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

African
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allele count: 4
allele frequency: 4.248088360237893e-4
allele num: 9416
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.075066e6

VQSLOD
type: SiteQuality
SIO_000300: 9.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.279e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.887e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.33e-1

FS
type: SiteQuality
SIO_000300: 1.784e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.549e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.699062117711024e-5
allele num: 58856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

DP
type: SiteQuality
SIO_000300: 1.053504e6

VQSLOD
type: SiteQuality
SIO_000300: 8.3e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.129e1

FS
type: SiteQuality
SIO_000300: 4.754e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.394e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.702069716775599e-5
allele num: 58752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

QD
type: SiteQuality
SIO_000300: 1.033e1

FS
type: SiteQuality
SIO_000300: 1.814e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.14e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

DP
type: SiteQuality
SIO_000300: 1.045086e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.353e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 42
allele frequency: 4.49582530507386e-3
allele num: 9342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9490
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-1

BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 1.028392e6

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.425e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.274534794799898e-4
allele num: 7846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9380
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5392
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9340
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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QD
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.430649421935573e-5
allele num: 58298
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 702
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5372
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

Latino
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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QD
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SIO_000300: 1.085e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.436781609195402e-3
allele num: 696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 7.572889057175312e-4
allele num: 5282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.246222719641858e-5
allele num: 57184
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

DP
type: SiteQuality
SIO_000300: 9.46558e5

MQ
type: SiteQuality
SIO_000300: 6.057e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.09e-1

QD
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SIO_000300: 1.276e1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 2
allele frequency: 2.682403433476395e-4
allele num: 7456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9898
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55982
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5152
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.46e-1

ClippingRankSum
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BaseQRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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FS
type: SiteQuality
SIO_000300: 1.0472e1

InbreedingCoeff
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SIO_000300: -6.5e-3

DP
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ReadPosRankSum
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SIO_000300: -1.093e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.832374390735515e-5
allele num: 54574
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.431e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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ReadPosRankSum
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ClippingRankSum
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DP
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MQRankSum
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InbreedingCoeff
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SIO_000300: -7.0e-3

BaseQRankSum
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SIO_000300: -9.29e-1

MQ
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SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4950
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.491280518186348e-4
allele num: 8028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 9.9e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 1.536e0

DP
type: SiteQuality
SIO_000300: 9.10973e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54184
num of homozygotes: 0

East Asian
type: Population
allele count: 1
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allele num: 7118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4950
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.536e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.9e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

DP
type: SiteQuality
SIO_000300: 9.10973e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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South Asian
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European (Non-Finnish)
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allele count: 9
allele frequency: 1.67000668002672e-4
allele num: 53892
num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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FS
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 53674
num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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Latino
type: Population
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Other
type: Population
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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QD
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MQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 6.561392764970911e-5
allele num: 45722
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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African
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Other
type: Population
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MQRankSum
type: SiteQuality
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MQ
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FS
type: SiteQuality
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ClippingRankSum
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DP
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QD
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9089
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3328
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 344
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 14291
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5738
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2701
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2250
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 4498
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45986
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.426940639269406e-4
allele num: 7008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3728
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 6.51890482398957e-4
allele num: 12272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5564
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.74858e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

QD
type: SiteQuality
SIO_000300: 1.293e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
all individuals: 6498
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5641
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2222
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8923
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.399776035834267e-4
allele num: 7144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.381597126277977e-4
allele num: 7238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12472
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

QD
type: SiteQuality
SIO_000300: 1.086e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.05531e5

GenotypeQuality
all individuals: 576
bin: 8.75e1
variant carriers: 436

GenotypeQuality
all individuals: 16622
bin: 9.75e1
variant carriers: 15424

GenotypeQuality
all individuals: 712
bin: 8.25e1
variant carriers: 458

GenotypeQuality
all individuals: 10032
bin: 2.25e1
variant carriers: 332

GenotypeQuality
all individuals: 510
bin: 5.75e1
variant carriers: 299

GenotypeQuality
all individuals: 1477
bin: 7.5e0
variant carriers: 125

GenotypeQuality
all individuals: 812
bin: 5.25e1
variant carriers: 400

GenotypeQuality
all individuals: 741
bin: 7.75e1
variant carriers: 416

GenotypeQuality
all individuals: 4306
bin: 3.75e1
variant carriers: 438

GenotypeQuality
all individuals: 1186
bin: 6.75e1
variant carriers: 324

GenotypeQuality
all individuals: 557
bin: 9.25e1
variant carriers: 384

GenotypeQuality
all individuals: 1932
bin: 2.5e0
variant carriers: 87

GenotypeQuality
all individuals: 1648
bin: 4.75e1
variant carriers: 410

GenotypeQuality
all individuals: 621
bin: 7.25e1
variant carriers: 326

GenotypeQuality
all individuals: 888
bin: 1.25e1
variant carriers: 141

GenotypeQuality
all individuals: 1058
bin: 1.75e1
variant carriers: 263

GenotypeQuality
all individuals: 1560
bin: 4.25e1
variant carriers: 287

European (Non-Finnish)
type: Population
allele count: 12729
allele frequency: 2.571619055315366e-1
allele num: 49498
num of homozygotes: 1442

Other
type: Population
allele count: 154
allele frequency: 2.40625e-1
allele num: 640
num of homozygotes: 19

South Asian
type: Population
allele count: 2352
allele frequency: 1.795419847328244e-1
allele num: 13100
num of homozygotes: 209

European (Finnish)
type: Population
allele count: 844
allele frequency: 2.050534499514091e-1
allele num: 4116
num of homozygotes: 63

East Asian
type: Population
allele count: 268
allele frequency: 4.630269523151347e-2
allele num: 5788
num of homozygotes: 7

African
type: Population
allele count: 2042
allele frequency: 2.621982537236774e-1
allele num: 7788
num of homozygotes: 251

Latino
type: Population
allele count: 2249
allele frequency: 2.859140605136029e-1
allele num: 7866
num of homozygotes: 254

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2