11-85418485-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418485
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418485
    reference: chr 11
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.416A>G
  hgvsp: ENSP00000432137.1:p.Asn139Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1994A>G
  hgvsp: ENSP00000434010.1:p.Asn665Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.2018A>G
  hgvsp: ENSP00000374610.4:p.Asn673Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.2018A>G
  hgvsp: ENSP00000435238.1:p.Asn673Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.296A>G
  hgvsp: ENSP00000437005.1:p.Asn99Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.416A>G
  hgvsp: ENSP00000435855.1:p.Asn139Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2090A>G
  hgvsp: ENSP00000431701.1:p.Asn697Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3104A>G
  hgvsp: ENSP00000346576.3:p.Asn1035Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.296A>G
  hgvsp: ENSP00000432144.1:p.Asn99Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4628A>G
  hgvsp: ENSP00000352065.5:p.Asn1543Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.3056A>G
  hgvsp: ENSP00000432694.1:p.Asn1019Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.188A>G
  hgvsp: ENSP00000436164.1:p.Asn63Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*106A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.416A>G
  hgvsp: ENSP00000432996.1:p.Asn139Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.383A>G
  hgvsp: ENSP00000374608.3:p.Asn128Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1241A>G
  hgvsp: ENSP00000435009.1:p.Asn414Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2093A>G
  hgvsp: ENSP00000318803.4:p.Asn698Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*711A>G
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn1035Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

11-85418493-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418493
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418493
    reference: chr 11
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.3048T>C
  hgvsp: ENST00000525423.1:c.3048T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3096T>C
  hgvsp: ENST00000354566.3:c.3096T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2082T>C
  hgvsp: ENST00000528231.1:c.2082T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.408T>C
  hgvsp: ENST00000525702.1:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.2010T>C
  hgvsp: ENST00000389960.4:c.2010T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.180T>C
  hgvsp: ENST00000533057.1:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.288T>C
  hgvsp: ENST00000527794.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1233T>C
  hgvsp: ENST00000530351.1:c.1233T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.408T>C
  hgvsp: ENST00000529581.1:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*98T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.2010T>C
  hgvsp: ENST00000524452.1:c.2010T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2085T>C
  hgvsp: ENST00000316356.4:c.2085T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.375T>C
  hgvsp: ENST00000389958.3:c.375T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.408T>C
  hgvsp: ENST00000529534.1:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4620T>C
  hgvsp: ENST00000359152.5:c.4620T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1986T>C
  hgvsp: ENST00000527523.1:c.1986T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.288T>C
  hgvsp: ENST00000533892.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*703T>C
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1032Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

11-85418499-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418499
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418499
    reference: chr 11
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.2004G>C
  hgvsp: ENSP00000435238.1:p.Leu668Phe
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.174G>C
  hgvsp: ENSP00000436164.1:p.Leu58Phe
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*697G>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.402G>C
  hgvsp: ENSP00000435855.1:p.Leu134Phe
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.369G>C
  hgvsp: ENSP00000374608.3:p.Leu123Phe
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.402G>C
  hgvsp: ENSP00000432996.1:p.Leu134Phe
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.2004G>C
  hgvsp: ENSP00000374610.4:p.Leu668Phe
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1227G>C
  hgvsp: ENSP00000435009.1:p.Leu409Phe
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4614G>C
  hgvsp: ENSP00000352065.5:p.Leu1538Phe
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*92G>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.282G>C
  hgvsp: ENSP00000437005.1:p.Leu94Phe
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.282G>C
  hgvsp: ENSP00000432144.1:p.Leu94Phe
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2076G>C
  hgvsp: ENSP00000431701.1:p.Leu692Phe
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1980G>C
  hgvsp: ENSP00000434010.1:p.Leu660Phe
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.402G>C
  hgvsp: ENSP00000432137.1:p.Leu134Phe
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2079G>C
  hgvsp: ENSP00000318803.4:p.Leu693Phe
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.3042G>C
  hgvsp: ENSP00000432694.1:p.Leu1014Phe
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3090G>C
  hgvsp: ENSP00000346576.3:p.Leu1030Phe
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1030Phe
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

11-85418511-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418511
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418511
    reference: chr 11
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.162G>A
  hgvsp: ENST00000533057.1:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1215G>A
  hgvsp: ENST00000530351.1:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2064G>A
  hgvsp: ENST00000528231.1:c.2064G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4602G>A
  hgvsp: ENST00000359152.5:c.4602G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.390G>A
  hgvsp: ENST00000525702.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.390G>A
  hgvsp: ENST00000529534.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1992G>A
  hgvsp: ENST00000389960.4:c.1992G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.357G>A
  hgvsp: ENST00000389958.3:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.3030G>A
  hgvsp: ENST00000525423.1:c.3030G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1992G>A
  hgvsp: ENST00000524452.1:c.1992G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1968G>A
  hgvsp: ENST00000527523.1:c.1968G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.270G>A
  hgvsp: ENST00000527794.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*685G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2067G>A
  hgvsp: ENST00000316356.4:c.2067G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*80G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.390G>A
  hgvsp: ENST00000529581.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.270G>A
  hgvsp: ENST00000533892.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3078G>A
  hgvsp: ENST00000354566.3:c.3078G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val1026Val
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

11-85418516-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418516
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418516
    reference: chr 11
allele count: 11
allele frequency: 9.061254077564335e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2059G>A
  hgvsp: ENSP00000431701.1:p.Val687Ile
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.385G>A
  hgvsp: ENSP00000432996.1:p.Val129Ile
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*680G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1210G>A
  hgvsp: ENSP00000435009.1:p.Val404Ile
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.385G>A
  hgvsp: ENSP00000432137.1:p.Val129Ile
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1987G>A
  hgvsp: ENSP00000374610.4:p.Val663Ile
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.385G>A
  hgvsp: ENSP00000435855.1:p.Val129Ile
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1987G>A
  hgvsp: ENSP00000435238.1:p.Val663Ile
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.352G>A
  hgvsp: ENSP00000374608.3:p.Val118Ile
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.265G>A
  hgvsp: ENSP00000437005.1:p.Val89Ile
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.157G>A
  hgvsp: ENSP00000436164.1:p.Val53Ile
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2062G>A
  hgvsp: ENSP00000318803.4:p.Val688Ile
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*75G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.265G>A
  hgvsp: ENSP00000432144.1:p.Val89Ile
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1963G>A
  hgvsp: ENSP00000434010.1:p.Val655Ile
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4597G>A
  hgvsp: ENSP00000352065.5:p.Val1533Ile
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3073G>A
  hgvsp: ENSP00000346576.3:p.Val1025Ile
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.3025G>A
  hgvsp: ENSP00000432694.1:p.Val1009Ile
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val1025Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

11-85418517-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418517
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418517
    reference: chr 11
allele count: 3
allele frequency: 2.471251112063001e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2061C>T
  hgvsp: ENST00000316356.4:c.2061C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1962C>T
  hgvsp: ENST00000527523.1:c.1962C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.156C>T
  hgvsp: ENST00000533057.1:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*679C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.384C>T
  hgvsp: ENST00000525702.1:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.384C>T
  hgvsp: ENST00000529581.1:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1986C>T
  hgvsp: ENST00000524452.1:c.1986C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.351C>T
  hgvsp: ENST00000389958.3:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1986C>T
  hgvsp: ENST00000389960.4:c.1986C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4596C>T
  hgvsp: ENST00000359152.5:c.4596C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.264C>T
  hgvsp: ENST00000527794.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1209C>T
  hgvsp: ENST00000530351.1:c.1209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2058C>T
  hgvsp: ENST00000528231.1:c.2058C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3072C>T
  hgvsp: ENST00000354566.3:c.3072C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.384C>T
  hgvsp: ENST00000529534.1:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.264C>T
  hgvsp: ENST00000533892.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*74C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.3024C>T
  hgvsp: ENST00000525423.1:c.3024C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1024Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

11-85418528-TCTTGCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418528
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418522
    reference: chr 11
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.367_372delGGCAAG
  hgvsp: ENSP00000432996.1:p.Gly123_Lys124del
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2041_2046delGGCAAG
  hgvsp: ENSP00000431701.1:p.Gly681_Lys682del
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1969_1974delGGCAAG
  hgvsp: ENSP00000435238.1:p.Gly657_Lys658del
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.139_144delGGCAAG
  hgvsp: ENSP00000436164.1:p.Gly47_Lys48del
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4579_4584delGGCAAG
  hgvsp: ENSP00000352065.5:p.Gly1527_Lys1528del
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*662_*667delGGCAAG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.247_252delGGCAAG
  hgvsp: ENSP00000432144.1:p.Gly83_Lys84del
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.3007_3012delGGCAAG
  hgvsp: ENSP00000432694.1:p.Gly1003_Lys1004del
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1969_1974delGGCAAG
  hgvsp: ENSP00000374610.4:p.Gly657_Lys658del
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.247_252delGGCAAG
  hgvsp: ENSP00000437005.1:p.Gly83_Lys84del
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1945_1950delGGCAAG
  hgvsp: ENSP00000434010.1:p.Gly649_Lys650del
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.367_372delGGCAAG
  hgvsp: ENSP00000432137.1:p.Gly123_Lys124del
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.334_339delGGCAAG
  hgvsp: ENSP00000374608.3:p.Gly112_Lys113del
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*57_*62delGGCAAG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2044_2049delGGCAAG
  hgvsp: ENSP00000318803.4:p.Gly682_Lys683del
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.367_372delGGCAAG
  hgvsp: ENSP00000435855.1:p.Gly123_Lys124del
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1192_1197delGGCAAG
  hgvsp: ENSP00000435009.1:p.Gly398_Lys399del
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3055_3060delGGCAAG
  hgvsp: ENSP00000346576.3:p.Gly1019_Lys1020del
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 7310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1019_Lys1020del
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: TCTTGCC
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

11-85418531-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418531
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418531
    reference: chr 11
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1972A>G
  hgvsp: ENSP00000435238.1:p.Lys658Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1972A>G
  hgvsp: ENSP00000374610.4:p.Lys658Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3058A>G
  hgvsp: ENSP00000346576.3:p.Lys1020Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.370A>G
  hgvsp: ENSP00000435855.1:p.Lys124Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1195A>G
  hgvsp: ENSP00000435009.1:p.Lys399Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4582A>G
  hgvsp: ENSP00000352065.5:p.Lys1528Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2044A>G
  hgvsp: ENSP00000431701.1:p.Lys682Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1948A>G
  hgvsp: ENSP00000434010.1:p.Lys650Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.142A>G
  hgvsp: ENSP00000436164.1:p.Lys48Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.3010A>G
  hgvsp: ENSP00000432694.1:p.Lys1004Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.370A>G
  hgvsp: ENSP00000432996.1:p.Lys124Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*60A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.337A>G
  hgvsp: ENSP00000374608.3:p.Lys113Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2047A>G
  hgvsp: ENSP00000318803.4:p.Lys683Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.250A>G
  hgvsp: ENSP00000437005.1:p.Lys84Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*665A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.370A>G
  hgvsp: ENSP00000432137.1:p.Lys124Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.250A>G
  hgvsp: ENSP00000432144.1:p.Lys84Glu
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys1020Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

11-85418532-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418532
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418532
    reference: chr 11
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2043C>T
  hgvsp: ENST00000528231.1:c.2043C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.369C>T
  hgvsp: ENST00000529534.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2046C>T
  hgvsp: ENST00000316356.4:c.2046C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.369C>T
  hgvsp: ENST00000525702.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.3009C>T
  hgvsp: ENST00000525423.1:c.3009C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1971C>T
  hgvsp: ENST00000389960.4:c.1971C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1971C>T
  hgvsp: ENST00000524452.1:c.1971C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.141C>T
  hgvsp: ENST00000533057.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.249C>T
  hgvsp: ENST00000527794.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3057C>T
  hgvsp: ENST00000354566.3:c.3057C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.369C>T
  hgvsp: ENST00000529581.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.336C>T
  hgvsp: ENST00000389958.3:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.249C>T
  hgvsp: ENST00000533892.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1194C>T
  hgvsp: ENST00000530351.1:c.1194C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*664C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*59C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1947C>T
  hgvsp: ENST00000527523.1:c.1947C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4581C>T
  hgvsp: ENST00000359152.5:c.4581C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Gly1019Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

11-85418546-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418546
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418546
    reference: chr 11
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*45A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3043A>G
  hgvsp: ENSP00000346576.3:p.Lys1015Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.235A>G
  hgvsp: ENSP00000437005.1:p.Lys79Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.355A>G
  hgvsp: ENSP00000432137.1:p.Lys119Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.355A>G
  hgvsp: ENSP00000432996.1:p.Lys119Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2029A>G
  hgvsp: ENSP00000431701.1:p.Lys677Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4567A>G
  hgvsp: ENSP00000352065.5:p.Lys1523Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.322A>G
  hgvsp: ENSP00000374608.3:p.Lys108Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1180A>G
  hgvsp: ENSP00000435009.1:p.Lys394Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2995A>G
  hgvsp: ENSP00000432694.1:p.Lys999Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1957A>G
  hgvsp: ENSP00000374610.4:p.Lys653Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1957A>G
  hgvsp: ENSP00000435238.1:p.Lys653Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.127A>G
  hgvsp: ENSP00000436164.1:p.Lys43Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1933A>G
  hgvsp: ENSP00000434010.1:p.Lys645Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*650A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2032A>G
  hgvsp: ENSP00000318803.4:p.Lys678Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.235A>G
  hgvsp: ENSP00000432144.1:p.Lys79Glu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.355A>G
  hgvsp: ENSP00000435855.1:p.Lys119Glu
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys1015Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

11-85418552-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418552
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418552
    reference: chr 11
allele count: 5
allele frequency: 4.11868399808893e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2023C>T
  hgvsp: ENSP00000431701.1:p.Pro675Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.316C>T
  hgvsp: ENSP00000374608.3:p.Pro106Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.349C>T
  hgvsp: ENSP00000435855.1:p.Pro117Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4561C>T
  hgvsp: ENSP00000352065.5:p.Pro1521Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3037C>T
  hgvsp: ENSP00000346576.3:p.Pro1013Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.349C>T
  hgvsp: ENSP00000432137.1:p.Pro117Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.349C>T
  hgvsp: ENSP00000432996.1:p.Pro117Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.121C>T
  hgvsp: ENSP00000436164.1:p.Pro41Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1951C>T
  hgvsp: ENSP00000435238.1:p.Pro651Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1927C>T
  hgvsp: ENSP00000434010.1:p.Pro643Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.229C>T
  hgvsp: ENSP00000437005.1:p.Pro77Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1174C>T
  hgvsp: ENSP00000435009.1:p.Pro392Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2989C>T
  hgvsp: ENSP00000432694.1:p.Pro997Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1951C>T
  hgvsp: ENSP00000374610.4:p.Pro651Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*644C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2026C>T
  hgvsp: ENSP00000318803.4:p.Pro676Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.229C>T
  hgvsp: ENSP00000432144.1:p.Pro77Ser
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8238
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1013Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

11-85418559-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418559
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418559
    reference: chr 11
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.309T>C
  hgvsp: ENST00000389958.3:c.309T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.222T>C
  hgvsp: ENST00000527794.1:c.222T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.342T>C
  hgvsp: ENST00000529581.1:c.342T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1167T>C
  hgvsp: ENST00000530351.1:c.1167T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*637T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.342T>C
  hgvsp: ENST00000525702.1:c.342T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3030T>C
  hgvsp: ENST00000354566.3:c.3030T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4554T>C
  hgvsp: ENST00000359152.5:c.4554T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1944T>C
  hgvsp: ENST00000524452.1:c.1944T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2016T>C
  hgvsp: ENST00000528231.1:c.2016T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1920T>C
  hgvsp: ENST00000527523.1:c.1920T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.222T>C
  hgvsp: ENST00000533892.1:c.222T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2019T>C
  hgvsp: ENST00000316356.4:c.2019T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.114T>C
  hgvsp: ENST00000533057.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.342T>C
  hgvsp: ENST00000529534.1:c.342T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1944T>C
  hgvsp: ENST00000389960.4:c.1944T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2982T>C
  hgvsp: ENST00000525423.1:c.2982T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*32T>C
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7269
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr1010Tyr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

11-85418560-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418560
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418560
    reference: chr 11
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1919A>G
  hgvsp: ENSP00000434010.1:p.Tyr640Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*636A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*31A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.113A>G
  hgvsp: ENSP00000436164.1:p.Tyr38Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3029A>G
  hgvsp: ENSP00000346576.3:p.Tyr1010Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2015A>G
  hgvsp: ENSP00000431701.1:p.Tyr672Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1943A>G
  hgvsp: ENSP00000435238.1:p.Tyr648Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.221A>G
  hgvsp: ENSP00000432144.1:p.Tyr74Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.308A>G
  hgvsp: ENSP00000374608.3:p.Tyr103Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.221A>G
  hgvsp: ENSP00000437005.1:p.Tyr74Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2018A>G
  hgvsp: ENSP00000318803.4:p.Tyr673Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.341A>G
  hgvsp: ENSP00000432996.1:p.Tyr114Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4553A>G
  hgvsp: ENSP00000352065.5:p.Tyr1518Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.341A>G
  hgvsp: ENSP00000432137.1:p.Tyr114Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1166A>G
  hgvsp: ENSP00000435009.1:p.Tyr389Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2981A>G
  hgvsp: ENSP00000432694.1:p.Tyr994Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1943A>G
  hgvsp: ENSP00000374610.4:p.Tyr648Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.341A>G
  hgvsp: ENSP00000435855.1:p.Tyr114Cys
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr1010Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/11-85418580-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418580
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418580
    reference: chr 11
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*17-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-6T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-6T>G
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7078
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.3015-6T>G
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum

11-85418583-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418583
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418583
    reference: chr 11
allele count: 5
allele frequency: 4.1556541830815e-5
allele num: 120318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*17-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-9C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-9C>T
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5996
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

11-85418585-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418585
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418585
    reference: chr 11
allele count: 12
allele frequency: 1.545515429395703e-4
allele num: 77644
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*17-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-11C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-11C>G
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

11-85418585-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418585
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418585
    reference: chr 11
allele count: 5
allele frequency: 6.439647622482098e-5
allele num: 77644
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*17-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-11C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-11C>A
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/11-85418587-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418587
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418587
    reference: chr 11
allele count: 1
allele frequency: 1.287034415300265e-5
allele num: 77698
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*17-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-13T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-13T>G
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-85418587-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418587
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418587
    reference: chr 11
allele count: 1
allele frequency: 1.287034415300265e-5
allele num: 77698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*17-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-13T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-13T>C
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

11-85418588-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418588
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418588
    reference: chr 11
allele count: 1
allele frequency: 1.287398939183274e-5
allele num: 77676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*17-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-14A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-14A>T
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

11-85418588-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418588
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418588
    reference: chr 11
allele count: 17
allele frequency: 2.188578196611566e-4
allele num: 77676
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*17-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-14A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-14A>G
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

11-85418589-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418589
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418589
    reference: chr 11
allele count: 1
allele frequency: 1.288759440162899e-5
allele num: 77594
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*17-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-15A>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-15A>C
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

11-85418591-AACAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418591
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418587
    reference: chr 11
allele count: 71811
allele frequency: 5.925684485006519e-1
allele num: 121186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-21_1152-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-21_1929-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-21_*622-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-21_207-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-21_1929-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-21_4539-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-21_2967-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-21_2001-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-21_327-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-21_99-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-21_3015-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*17-21_*17-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-21_207-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-21_294-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-21_327-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-21_1905-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-21_327-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-21_2004-18delCTGT
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 4.75e1
  variant carriers: 4187
genotype depth: GenotypeDepth
  all individuals: 4873
  bin: 5.25e1
  variant carriers: 4708
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 2.75e1
  variant carriers: 969
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 4.25e1
  variant carriers: 3508
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 7.75e1
  variant carriers: 2870
genotype quality: GenotypeQuality
num of homozygotes: 21748
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: AACAG
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-85418593-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418593
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418593
    reference: chr 11
allele count: 1
allele frequency: 2.743484224965706e-5
allele num: 36450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*17-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-19G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-19G>T
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

11-85418617-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418617
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418617
    reference: chr 11
allele count: 6
allele frequency: 4.984962031205863e-5
allele num: 120362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*17-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-43C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-43C>T
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

11-85418618-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418618
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418618
    reference: chr 11
allele count: 3
allele frequency: 2.493185293531015e-5
allele num: 120328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*17-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-44A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-44A>G
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10975
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

11-85418620-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418620
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418620
    reference: chr 11
allele count: 1
allele frequency: 8.320159747067144e-6
allele num: 120190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*17-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-46T>C
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-46T>C
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

11-85418620-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418620
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418620
    reference: chr 11
allele count: 3
allele frequency: 2.496047924120143e-5
allele num: 120190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*17-46T>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-46T>A
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6318
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10241
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

11-85418625-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85418625
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85418624
    reference: chr 11
allele count: 4
allele frequency: 3.344425678500359e-5
allele num: 119602
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*17-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-52delG
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-52delG
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9926
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: TC
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

11-85419074-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85419074
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85419074
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-500A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-500A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-500A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*16+7A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-500A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-500A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-500A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-500A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-500A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-500A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-500A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-500A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-500A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-500A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-500A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-500A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-500A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-500A>G
  variant of: http://identifiers.org/hgnc/15585
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.*16+7A>G
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

11-85419080-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85419080
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85419080
    reference: chr 11
allele count: 1
allele frequency: 1.336898395721925e-3
allele num: 748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-506G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-506G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-506G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-506G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-506G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.*16+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-506G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-506G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-506G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-506G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-506G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-506G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-506G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-506G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-506G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-506G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-506G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-506G>A
  variant of: http://identifiers.org/hgnc/15585
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.*16+1G>A
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

11-85419106-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85419106
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85419106
    reference: chr 11
allele count: 1
allele frequency: 4.642525533890436e-4
allele num: 2154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-532A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-532A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.294A>G
  hgvsp: ENST00000532995.1:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-532A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-532A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-532A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-532A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-532A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-532A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-532A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-532A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-532A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-532A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-532A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-532A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-532A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-532A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-532A>G
  variant of: http://identifiers.org/hgnc/15585
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser98Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

11-85419147-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85419147
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85419147
    reference: chr 11
allele count: 1
allele frequency: 1.548467017652524e-4
allele num: 6458
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-573A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-573A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-573A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-573A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-573A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-573A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-573A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-573A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-573A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-573A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-573A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.253A>G
  hgvsp: ENSP00000436678.1:p.Ser85Gly
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-573A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-573A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-573A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-573A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-573A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-573A>G
  variant of: http://identifiers.org/hgnc/15585
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser85Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

11-85419167-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85419167
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85419167
    reference: chr 11
allele count: 3
allele frequency: 3.664793549963352e-4
allele num: 8186
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-593C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-593C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-593C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-593C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-593C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.233C>G
  hgvsp: ENSP00000436678.1:p.Ala78Gly
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-593C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-593C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-593C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-593C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-593C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-593C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-593C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-593C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-593C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-593C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-593C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-593C>G
  variant of: http://identifiers.org/hgnc/15585
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala78Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-85419174-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85419174
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85419174
    reference: chr 11
allele count: 1
allele frequency: 1.175640724194686e-4
allele num: 8506
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-600G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-600G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-600G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-600G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-600G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-600G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.226G>T
  hgvsp: ENSP00000436678.1:p.Ala76Ser
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-600G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-600G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-600G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-600G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-600G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-600G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-600G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-600G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-600G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-600G>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-600G>T
  variant of: http://identifiers.org/hgnc/15585
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala76Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

11-85419193-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85419193
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85419193
    reference: chr 11
allele count: 6151
allele frequency: 6.432754653838109e-1
allele num: 9562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-619G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-619G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-619G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-619G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-619G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-619G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-619G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-619G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-619G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-619G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-619G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.207G>A
  hgvsp: ENST00000532995.1:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-619G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-619G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-619G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-619G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-619G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-619G>A
  variant of: http://identifiers.org/hgnc/15585
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 1.25e1
  variant carriers: 878
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 2.25e1
  variant carriers: 1003
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.75e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
hgvs: c.207G>A
num of homozygotes: 2018
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/11-85419196-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85419196
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85419197
    reference: chr 11
allele count: 881
allele frequency: 1.576592698639943e-1
allele num: 5588
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-623dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-623dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-623dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-623dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-623dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-623dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-623dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-623dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-623dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-623dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-623dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.207-4dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-623dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-623dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-623dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-623dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-623dupT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-623dupT
  variant of: http://identifiers.org/hgnc/15585
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.207-4dupT
num of homozygotes: 4
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/11-85419196-C-CAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85419196
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85419198
    reference: chr 11
allele count: 21
allele frequency: 3.758052970651396e-3
allele num: 5588
alternate allele: CAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-624_327-623dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.207-5_207-4dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-624_207-623dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-624_327-623dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-624_207-623dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-624_3015-623dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-624_1152-623dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-624_*622-623dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-624_1929-623dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-624_2001-623dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-624_294-623dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-624_1929-623dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-624_2967-623dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-624_4539-623dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-624_327-623dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-624_2004-623dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-624_1905-623dupTT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-624_99-623dupTT
  variant of: http://identifiers.org/hgnc/15585
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.207-5_207-4dupTT
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/11-85419196-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85419196
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85419195
    reference: chr 11
allele count: 1585
allele frequency: 2.836435218324982e-1
allele num: 5588
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-623delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-623delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-623delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-623delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-623delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-623delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-623delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-623delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-623delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-623delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-623delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-623delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-623delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.207-4delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-623delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-623delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-623delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-623delT
  variant of: http://identifiers.org/hgnc/15585
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.25e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.25e1
  variant carriers: 490
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
hgvs: c.207-4delT
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: CA
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/11-85419196-CAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85419196
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85419194
    reference: chr 11
allele count: 59
allele frequency: 1.055833929849678e-2
allele num: 5588
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.25e1
  variant carriers: 3
num of homozygotes: 0
population: African
  type: Population
  allele count: 2
  allele frequency: 1.785714285714286e-2
  allele num: 112
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 3
  allele frequency: 7.5e-2
  allele num: 40
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 9.803921568627451e-3
  allele num: 102
  num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: CAA
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-85419196-CAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85419196
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85419193
    reference: chr 11
allele count: 3
allele frequency: 5.368647100930566e-4
allele num: 5588
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 40
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 8.928571428571428e-3
  allele num: 112
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 62
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1380
  num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: CAAA
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum

11-85419209-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85419209
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85419209
    reference: chr 11
allele count: 2
allele frequency: 2.508151492350138e-4
allele num: 7974
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-635C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-635C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-635C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-635C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-635C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-635C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-635C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-635C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-635C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-635C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-635C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-635C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-635C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-635C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-635C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-635C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.207-16C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-635C>T
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

11-85419209-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85419209
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85419208
    reference: chr 11
allele count: 1
allele frequency: 1.254075746175069e-4
allele num: 7974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-636delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-636delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-636delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-636delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-636delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-636delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-636delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-636delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-636delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-636delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.207-17delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-636delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-636delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-636delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-636delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-636delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-636delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-636delT
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: GA
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD

11-85419217-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85419217
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85419217
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 9226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-643C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.207-24C>T
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

11-85419235-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85419235
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85419234
    reference: chr 11
allele count: 1
allele frequency: 1.084363478638039e-4
allele num: 9222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.99-662delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.327-662delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1152-662delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.327-662delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2004-662delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4539-662delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1905-662delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*622-662delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1929-662delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3015-662delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2001-662delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1929-662delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.207-662delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.294-662delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.207-662delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.327-662delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.207-43delT
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2967-662delT
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: TA
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

11-85420324-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420324
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420324
    reference: chr 11
allele count: 2
allele frequency: 1.665001665001665e-5
allele num: 120120
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4538+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1904+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3014+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.206+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*621+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2003+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.206+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.326+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.326+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1151+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.293+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.98+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.206+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1928+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2000+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.326+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2966+50A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1928+50A>G
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

11-85420326-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420326
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420326
    reference: chr 11
allele count: 1
allele frequency: 8.325285557294615e-6
allele num: 120116
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3014+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1904+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1151+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.206+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4538+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.326+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.326+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2003+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.206+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.98+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2000+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.326+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1928+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.206+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.293+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*621+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2966+48C>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1928+48C>A
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4137
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

11-85420334-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420334
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420334
    reference: chr 11
allele count: 1
allele frequency: 8.317114959162966e-6
allele num: 120234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4538+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.293+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.326+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1151+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2000+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.206+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*621+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.206+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.206+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1928+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2003+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1928+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3014+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.326+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.98+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2966+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1904+40C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.326+40C>T
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

11-85420336-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420336
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420336
    reference: chr 11
allele count: 4
allele frequency: 3.325905477766322e-5
allele num: 120268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.293+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.206+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2966+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*621+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2003+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.206+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.326+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.98+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2000+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.326+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1928+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.206+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1151+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1904+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3014+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4538+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.326+38C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1928+38C>G
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

11-85420343-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420343
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420343
    reference: chr 11
allele count: 2
allele frequency: 1.661764461505226e-5
allele num: 120354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2966+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.206+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2000+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1928+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1151+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3014+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1904+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*621+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4538+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.206+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.206+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.293+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.98+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.326+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.326+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1928+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2003+31C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.326+31C>T
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/11-85420351-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420351
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420351
    reference: chr 11
allele count: 1
allele frequency: 8.29228651508367e-6
allele num: 120594
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.206+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*621+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.206+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2000+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.293+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2003+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.326+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2966+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.206+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1928+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.326+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3014+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.98+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1928+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4538+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1904+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1151+23T>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.326+23T>G
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

11-85420353-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420353
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420353
    reference: chr 11
allele count: 4
allele frequency: 3.315320094155091e-5
allele num: 120652
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2003+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.326+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1928+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.98+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.293+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4538+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.326+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3014+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.326+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2000+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.206+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.206+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1928+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.206+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1151+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2966+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*621+21C>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1904+21C>G
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6302
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

11-85420373-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420373
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420373
    reference: chr 11
allele count: 1
allele frequency: 8.258320257659592e-6
allele num: 121090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1928+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*621+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2966+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4538+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2000+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.206+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3014+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.98+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1928+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.293+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.206+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.326+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.326+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.206+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137501
  ensembl transcript: ENST00000530894
  gene symbol: SYTL2
  hgvsc: ENST00000530894.1:n.438G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.326+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2003+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1904+1G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1151+1G>A
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.3014+1G>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

11-85420374-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420374
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420374
    reference: chr 11
allele count: 7
allele frequency: 5.778438170711573e-5
allele num: 121140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1151C>T
  hgvsp: ENSP00000435009.1:p.Pro384Leu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.326C>T
  hgvsp: ENSP00000435855.1:p.Pro109Leu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4538C>T
  hgvsp: ENSP00000352065.5:p.Pro1513Leu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1928C>T
  hgvsp: ENSP00000435238.1:p.Pro643Leu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.2000C>T
  hgvsp: ENSP00000431701.1:p.Pro667Leu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.98C>T
  hgvsp: ENSP00000436164.1:p.Pro33Leu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3014C>T
  hgvsp: ENSP00000346576.3:p.Pro1005Leu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.293C>T
  hgvsp: ENSP00000374608.3:p.Pro98Leu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.326C>T
  hgvsp: ENSP00000432996.1:p.Pro109Leu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.206C>T
  hgvsp: ENSP00000437005.1:p.Pro69Leu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.206C>T
  hgvsp: ENSP00000432144.1:p.Pro69Leu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.206C>T
  hgvsp: ENSP00000436678.1:p.Pro69Leu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.2003C>T
  hgvsp: ENSP00000318803.4:p.Pro668Leu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.326C>T
  hgvsp: ENSP00000432137.1:p.Pro109Leu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1904C>T
  hgvsp: ENSP00000434010.1:p.Pro635Leu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2966C>T
  hgvsp: ENSP00000432694.1:p.Pro989Leu
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1928C>T
  hgvsp: ENSP00000374610.4:p.Pro643Leu
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro1005Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

11-85420383-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420383
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420383
    reference: chr 11
allele count: 5
allele frequency: 4.123235255310727e-5
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.284G>A
  hgvsp: ENSP00000374608.3:p.Arg95His
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1919G>A
  hgvsp: ENSP00000374610.4:p.Arg640His
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.197G>A
  hgvsp: ENSP00000436678.1:p.Arg66His
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.1991G>A
  hgvsp: ENSP00000431701.1:p.Arg664His
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137501
  ensembl transcript: ENST00000530894
  gene symbol: SYTL2
  hgvsc: ENST00000530894.1:n.428G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4529G>A
  hgvsp: ENSP00000352065.5:p.Arg1510His
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.317G>A
  hgvsp: ENSP00000432137.1:p.Arg106His
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.317G>A
  hgvsp: ENSP00000432996.1:p.Arg106His
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.1994G>A
  hgvsp: ENSP00000318803.4:p.Arg665His
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2957G>A
  hgvsp: ENSP00000432694.1:p.Arg986His
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*612G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1895G>A
  hgvsp: ENSP00000434010.1:p.Arg632His
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1919G>A
  hgvsp: ENSP00000435238.1:p.Arg640His
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.197G>A
  hgvsp: ENSP00000432144.1:p.Arg66His
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.197G>A
  hgvsp: ENSP00000437005.1:p.Arg66His
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1142G>A
  hgvsp: ENSP00000435009.1:p.Arg381His
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.89G>A
  hgvsp: ENSP00000436164.1:p.Arg30His
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3005G>A
  hgvsp: ENSP00000346576.3:p.Arg1002His
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.317G>A
  hgvsp: ENSP00000435855.1:p.Arg106His
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg1002His
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

11-85420384-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420384
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420384
    reference: chr 11
allele count: 2
allele frequency: 1.649158104787506e-5
allele num: 121274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.88C>T
  hgvsp: ENSP00000436164.1:p.Arg30Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.316C>T
  hgvsp: ENSP00000435855.1:p.Arg106Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1918C>T
  hgvsp: ENSP00000374610.4:p.Arg640Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.316C>T
  hgvsp: ENSP00000432137.1:p.Arg106Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1141C>T
  hgvsp: ENSP00000435009.1:p.Arg381Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.1993C>T
  hgvsp: ENSP00000318803.4:p.Arg665Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.283C>T
  hgvsp: ENSP00000374608.3:p.Arg95Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137501
  ensembl transcript: ENST00000530894
  gene symbol: SYTL2
  hgvsc: ENST00000530894.1:n.427C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1918C>T
  hgvsp: ENSP00000435238.1:p.Arg640Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.196C>T
  hgvsp: ENSP00000437005.1:p.Arg66Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.196C>T
  hgvsp: ENSP00000436678.1:p.Arg66Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4528C>T
  hgvsp: ENSP00000352065.5:p.Arg1510Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3004C>T
  hgvsp: ENSP00000346576.3:p.Arg1002Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1894C>T
  hgvsp: ENSP00000434010.1:p.Arg632Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.1990C>T
  hgvsp: ENSP00000431701.1:p.Arg664Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.316C>T
  hgvsp: ENSP00000432996.1:p.Arg106Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*611C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.196C>T
  hgvsp: ENSP00000432144.1:p.Arg66Cys
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2956C>T
  hgvsp: ENSP00000432694.1:p.Arg986Cys
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg1002Cys
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

11-85420386-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420386
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420386
    reference: chr 11
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.314A>G
  hgvsp: ENSP00000432996.1:p.Gln105Arg
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.194A>G
  hgvsp: ENSP00000432144.1:p.Gln65Arg
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.314A>G
  hgvsp: ENSP00000432137.1:p.Gln105Arg
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1892A>G
  hgvsp: ENSP00000434010.1:p.Gln631Arg
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.314A>G
  hgvsp: ENSP00000435855.1:p.Gln105Arg
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1139A>G
  hgvsp: ENSP00000435009.1:p.Gln380Arg
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.1991A>G
  hgvsp: ENSP00000318803.4:p.Gln664Arg
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.1988A>G
  hgvsp: ENSP00000431701.1:p.Gln663Arg
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*609A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.281A>G
  hgvsp: ENSP00000374608.3:p.Gln94Arg
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3002A>G
  hgvsp: ENSP00000346576.3:p.Gln1001Arg
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2954A>G
  hgvsp: ENSP00000432694.1:p.Gln985Arg
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1916A>G
  hgvsp: ENSP00000374610.4:p.Gln639Arg
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.194A>G
  hgvsp: ENSP00000437005.1:p.Gln65Arg
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.86A>G
  hgvsp: ENSP00000436164.1:p.Gln29Arg
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1916A>G
  hgvsp: ENSP00000435238.1:p.Gln639Arg
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4526A>G
  hgvsp: ENSP00000352065.5:p.Gln1509Arg
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137501
  ensembl transcript: ENST00000530894
  gene symbol: SYTL2
  hgvsc: ENST00000530894.1:n.425A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.194A>G
  hgvsp: ENSP00000436678.1:p.Gln65Arg
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gln1001Arg
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

11-85420387-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420387
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420387
    reference: chr 11
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3001C>T
  hgvsp: ENSP00000346576.3:p.Gln1001Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.280C>T
  hgvsp: ENSP00000374608.3:p.Gln94Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.313C>T
  hgvsp: ENSP00000432996.1:p.Gln105Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1915C>T
  hgvsp: ENSP00000374610.4:p.Gln639Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.1987C>T
  hgvsp: ENSP00000431701.1:p.Gln663Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.85C>T
  hgvsp: ENSP00000436164.1:p.Gln29Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.1990C>T
  hgvsp: ENSP00000318803.4:p.Gln664Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.193C>T
  hgvsp: ENSP00000436678.1:p.Gln65Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.313C>T
  hgvsp: ENSP00000432137.1:p.Gln105Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4525C>T
  hgvsp: ENSP00000352065.5:p.Gln1509Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*608C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1915C>T
  hgvsp: ENSP00000435238.1:p.Gln639Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.193C>T
  hgvsp: ENSP00000432144.1:p.Gln65Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1891C>T
  hgvsp: ENSP00000434010.1:p.Gln631Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.193C>T
  hgvsp: ENSP00000437005.1:p.Gln65Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2953C>T
  hgvsp: ENSP00000432694.1:p.Gln985Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1138C>T
  hgvsp: ENSP00000435009.1:p.Gln380Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.313C>T
  hgvsp: ENSP00000435855.1:p.Gln105Ter
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137501
  ensembl transcript: ENST00000530894
  gene symbol: SYTL2
  hgvsc: ENST00000530894.1:n.424C>T
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gln1001Ter
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

11-85420388-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420388
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420388
    reference: chr 11
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.1989A>T
  hgvsp: ENSP00000318803.4:p.Lys663Asn
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137501
  ensembl transcript: ENST00000530894
  gene symbol: SYTL2
  hgvsc: ENST00000530894.1:n.423A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.312A>T
  hgvsp: ENSP00000435855.1:p.Lys104Asn
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1914A>T
  hgvsp: ENSP00000374610.4:p.Lys638Asn
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1914A>T
  hgvsp: ENSP00000435238.1:p.Lys638Asn
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.312A>T
  hgvsp: ENSP00000432996.1:p.Lys104Asn
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*607A>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.3000A>T
  hgvsp: ENSP00000346576.3:p.Lys1000Asn
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.192A>T
  hgvsp: ENSP00000436678.1:p.Lys64Asn
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1137A>T
  hgvsp: ENSP00000435009.1:p.Lys379Asn
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.1986A>T
  hgvsp: ENSP00000431701.1:p.Lys662Asn
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1890A>T
  hgvsp: ENSP00000434010.1:p.Lys630Asn
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.192A>T
  hgvsp: ENSP00000437005.1:p.Lys64Asn
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.279A>T
  hgvsp: ENSP00000374608.3:p.Lys93Asn
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.312A>T
  hgvsp: ENSP00000432137.1:p.Lys104Asn
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.192A>T
  hgvsp: ENSP00000432144.1:p.Lys64Asn
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2952A>T
  hgvsp: ENSP00000432694.1:p.Lys984Asn
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.84A>T
  hgvsp: ENSP00000436164.1:p.Lys28Asn
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4524A>T
  hgvsp: ENSP00000352065.5:p.Lys1508Asn
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Lys1000Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum

11-85420394-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420394
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420394
    reference: chr 11
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.2994A>G
  hgvsp: ENST00000354566.3:c.2994A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.1983A>G
  hgvsp: ENST00000316356.4:c.1983A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.306A>G
  hgvsp: ENST00000525702.1:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1884A>G
  hgvsp: ENST00000527523.1:c.1884A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.78A>G
  hgvsp: ENST00000533057.1:c.78A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.186A>G
  hgvsp: ENST00000532995.1:c.186A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.273A>G
  hgvsp: ENST00000389958.3:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434111
  ensembl transcript: ENST00000526999
  gene symbol: SYTL2
  hgvsc: ENST00000526999.1:c.306A>G
  hgvsp: ENST00000526999.1:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2946A>G
  hgvsp: ENST00000525423.1:c.2946A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.1980A>G
  hgvsp: ENST00000528231.1:c.1980A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1131A>G
  hgvsp: ENST00000530351.1:c.1131A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.186A>G
  hgvsp: ENST00000527794.1:c.186A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4518A>G
  hgvsp: ENST00000359152.5:c.4518A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137501
  ensembl transcript: ENST00000530894
  gene symbol: SYTL2
  hgvsc: ENST00000530894.1:n.417A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.306A>G
  hgvsp: ENST00000529581.1:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1908A>G
  hgvsp: ENST00000524452.1:c.1908A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.306A>G
  hgvsp: ENST00000529534.1:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*601A>G
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.186A>G
  hgvsp: ENST00000533892.1:c.186A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val998Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

11-85420400-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420400
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420400
    reference: chr 11
allele count: 7
allele frequency: 5.768153202149049e-5
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1878G>A
  hgvsp: ENST00000527523.1:c.1878G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4512G>A
  hgvsp: ENST00000359152.5:c.4512G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137501
  ensembl transcript: ENST00000530894
  gene symbol: SYTL2
  hgvsc: ENST00000530894.1:n.411G>A
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.72G>A
  hgvsp: ENST00000533057.1:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.1974G>A
  hgvsp: ENST00000528231.1:c.1974G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1902G>A
  hgvsp: ENST00000524452.1:c.1902G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.2988G>A
  hgvsp: ENST00000354566.3:c.2988G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.267G>A
  hgvsp: ENST00000389958.3:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.1977G>A
  hgvsp: ENST00000316356.4:c.1977G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.300G>A
  hgvsp: ENST00000525702.1:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.180G>A
  hgvsp: ENST00000532995.1:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.300G>A
  hgvsp: ENST00000529534.1:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.300G>A
  hgvsp: ENST00000529581.1:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2940G>A
  hgvsp: ENST00000525423.1:c.2940G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1125G>A
  hgvsp: ENST00000530351.1:c.1125G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434111
  ensembl transcript: ENST00000526999
  gene symbol: SYTL2
  hgvsc: ENST00000526999.1:c.300G>A
  hgvsp: ENST00000526999.1:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1902G>A
  hgvsp: ENST00000389960.4:c.1902G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.180G>A
  hgvsp: ENST00000527794.1:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374609
  ensembl transcript: ENST00000389959
  gene symbol: SYTL2
  hgvsc: ENST00000389959.4:c.*595G>A
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala996Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

11-85420401-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85420401
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 85420401
    reference: chr 11
allele count: 3007
allele frequency: 2.477588820776482e-2
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432137
  ensembl transcript: ENST00000529534
  gene symbol: SYTL2
  hgvsc: ENST00000529534.1:c.299C>T
  hgvsp: ENSP00000432137.1:p.Ala100Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000352065
  ensembl transcript: ENST00000359152
  gene symbol: SYTL2
  hgvsc: ENST00000359152.5:c.4511C>T
  hgvsp: ENSP00000352065.5:p.Ala1504Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432694
  ensembl transcript: ENST00000525423
  gene symbol: SYTL2
  hgvsc: ENST00000525423.1:c.2939C>T
  hgvsp: ENSP00000432694.1:p.Ala980Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374608
  ensembl transcript: ENST00000389958
  gene symbol: SYTL2
  hgvsc: ENST00000389958.3:c.266C>T
  hgvsp: ENSP00000374608.3:p.Ala89Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435009
  ensembl transcript: ENST00000530351
  gene symbol: SYTL2
  hgvsc: ENST00000530351.1:c.1124C>T
  hgvsp: ENSP00000435009.1:p.Ala375Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435855
  ensembl transcript: ENST00000529581
  gene symbol: SYTL2
  hgvsc: ENST00000529581.1:c.299C>T
  hgvsp: ENSP00000435855.1:p.Ala100Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434111
  ensembl transcript: ENST00000526999
  gene symbol: SYTL2
  hgvsc: ENST00000526999.1:c.299C>T
  hgvsp: ENSP00000434111.1:p.Ala100Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000434010
  ensembl transcript: ENST00000527523
  gene symbol: SYTL2
  hgvsc: ENST00000527523.1:c.1877C>T
  hgvsp: ENSP00000434010.1:p.Ala626Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436164
  ensembl transcript: ENST00000533057
  gene symbol: SYTL2
  hgvsc: ENST00000533057.1:c.71C>T
  hgvsp: ENSP00000436164.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000435238
  ensembl transcript: ENST00000524452
  gene symbol: SYTL2
  hgvsc: ENST00000524452.1:c.1901C>T
  hgvsp: ENSP00000435238.1:p.Ala634Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432996
  ensembl transcript: ENST00000525702
  gene symbol: SYTL2
  hgvsc: ENST00000525702.1:c.299C>T
  hgvsp: ENSP00000432996.1:p.Ala100Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000346576
  ensembl transcript: ENST00000354566
  gene symbol: SYTL2
  hgvsc: ENST00000354566.3:c.2987C>T
  hgvsp: ENSP00000346576.3:p.Ala996Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000374610
  ensembl transcript: ENST00000389960
  gene symbol: SYTL2
  hgvsc: ENST00000389960.4:c.1901C>T
  hgvsp: ENSP00000374610.4:p.Ala634Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000318803
  ensembl transcript: ENST00000316356
  gene symbol: SYTL2
  hgvsc: ENST00000316356.4:c.1976C>T
  hgvsp: ENSP00000318803.4:p.Ala659Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000431701
  ensembl transcript: ENST00000528231
  gene symbol: SYTL2
  hgvsc: ENST00000528231.1:c.1973C>T
  hgvsp: ENSP00000431701.1:p.Ala658Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000437005
  ensembl transcript: ENST00000527794
  gene symbol: SYTL2
  hgvsc: ENST00000527794.1:c.179C>T
  hgvsp: ENSP00000437005.1:p.Ala60Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000436678
  ensembl transcript: ENST00000532995
  gene symbol: SYTL2
  hgvsc: ENST00000532995.1:c.179C>T
  hgvsp: ENSP00000436678.1:p.Ala60Val
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137501
  ensembl transcript: ENST00000530894
  gene symbol: SYTL2
  hgvsc: ENST00000530894.1:n.410C>T
  variant of: http://identifiers.org/hgnc/15585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137501
  ensembl protein: ENSP00000432144
  ensembl transcript: ENST00000533892
  gene symbol: SYTL2
  hgvsc: ENST00000533892.1:c.179C>T
  hgvsp: ENSP00000432144.1:p.Ala60Val
  variant of: http://identifiers.org/hgnc/15585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala996Val
num of homozygotes: 61
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

11-85420407-G-C
type: Variant
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: C
canonical: true
consequence: missense
filter: PASS
hgvs: p.Ala994Gly
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 3949
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6788
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7296
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1409
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 728
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 481
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8238
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9408
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 998
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 408
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4890
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9593
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3284
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 584
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 385
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

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GenotypeQuality
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QD
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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DP
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African
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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South Asian
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African
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Other
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East Asian
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
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MQRankSum
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VQSLOD
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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Other
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South Asian
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Latino
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QD
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MQRankSum
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DP
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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African
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East Asian
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European (Finnish)
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Other
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FS
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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DP
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MQ
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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Latino
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Other
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European (Non-Finnish)
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East Asian
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QD
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FS
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ReadPosRankSum
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VQSLOD
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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South Asian
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FS
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VQSLOD
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DP
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66732
num of homozygotes: 0

East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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QD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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BaseQRankSum
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FS
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele num: 10402
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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MQRankSum
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VQSLOD
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FS
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MQ
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InbreedingCoeff
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QD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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MQRankSum
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SIO_000300: 7.76e-1

VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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FS
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ClippingRankSum
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QD
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SIO_000300: 1.442e1

DP
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SIO_000300: 2.852854e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66676
num of homozygotes: 0

FS
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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DP
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QD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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African
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European (Finnish)
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allele count: 0
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South Asian
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Latino
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allele num: 11556
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Other
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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DP
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

Other
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Latino
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East Asian
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allele frequency: 2.295332823259373e-3
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European (Finnish)
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African
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European (Non-Finnish)
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InbreedingCoeff
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MQ
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DP
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BaseQRankSum
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QD
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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FS
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MQ
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QD
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InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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African
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Other
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MQ
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FS
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DP
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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MQRankSum
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QD
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ClippingRankSum
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DP
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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African
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South Asian
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MQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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DP
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Finnish)
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MQRankSum
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FS
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QD
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VQSLOD
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ClippingRankSum
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DP
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 1
allele frequency: 1.917913310318374e-4
allele num: 5214
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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QD
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FS
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MQ
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SIO_000300: 5.307e1

DP
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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SIO_000300: -8.169999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.18e-2

MQRankSum
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SIO_000300: 2.6e0

GenotypeDepth
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variant carriers: 1633

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 2407

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 4633
allele frequency: 4.458237105465743e-1
allele num: 10392
num of homozygotes: 1012

European (Finnish)
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allele frequency: 6.697456087219866e-1
allele num: 6604
num of homozygotes: 1486

East Asian
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allele frequency: 6.324142724745134e-1
allele num: 8632
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South Asian
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allele frequency: 5.044296116504854e-1
allele num: 16480
num of homozygotes: 2157

European (Non-Finnish)
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allele count: 42875
allele frequency: 6.436141467515312e-1
allele num: 66616
num of homozygotes: 13852

Other
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allele frequency: 6.017699115044248e-1
allele num: 904
num of homozygotes: 169

Latino
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allele count: 5564
allele frequency: 4.81398165772625e-1
allele num: 11558
num of homozygotes: 1370

InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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FS
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DP
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VQSLOD
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QD
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SIO_000300: 2.297e1

ReadPosRankSum
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SIO_000300: 1.72e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 333
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 2.189141856392294e-4
allele num: 4568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 16792
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.834e0

MQRankSum
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SIO_000300: -4.9e-1

VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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SIO_000300: 7.76e-1

MQ
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SIO_000300: 5.325e1

FS
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 3
allele frequency: 1.845926655180901e-4
allele num: 16252
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.525706010137581e-5
allele num: 66288
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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MQRankSum
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ReadPosRankSum
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FS
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DP
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InbreedingCoeff
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VQSLOD
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MQ
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ClippingRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.846835754740212e-4
allele num: 16244
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66264
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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DP
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SIO_000300: 2.344227e6

BaseQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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MQRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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FS
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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DP
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QD
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MQ
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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Other
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQ
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DP
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VQSLOD
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BaseQRankSum
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MQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Other
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Latino
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European (Finnish)
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South Asian
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African
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BaseQRankSum
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InbreedingCoeff
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QD
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MQRankSum
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DP
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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DP
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MQRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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African
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Latino
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East Asian
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European (Non-Finnish)
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FS
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InbreedingCoeff
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QD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeQuality
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Other
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Latino
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African
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East Asian
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European (Finnish)
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South Asian
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ReadPosRankSum
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DP
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BaseQRankSum
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FS
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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VQSLOD
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MQ
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GenotypeDepth
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African
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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DP
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VQSLOD
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MQ
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QD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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European (Finnish)
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African
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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DP
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MQ
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VQSLOD
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QD
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BaseQRankSum
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East Asian
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European (Finnish)
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InbreedingCoeff
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MQ
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ClippingRankSum
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QD
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ReadPosRankSum
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VQSLOD
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DP
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FS
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MQRankSum
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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South Asian
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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QD
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MQ
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VQSLOD
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ClippingRankSum
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European (Finnish)
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African
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European (Non-Finnish)
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VQSLOD
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African
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GenotypeQuality
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European (Finnish)
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QD
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VQSLOD
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DP
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FS
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MQ
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GenotypeQuality
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East Asian
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African
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MQ
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DP
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FS
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Latino
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African
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European (Non-Finnish)
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ReadPosRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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MQRankSum
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VQSLOD
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MQ
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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African
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FS
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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East Asian
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South Asian
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European (Non-Finnish)
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QD
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GenotypeQuality
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African
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South Asian
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FS
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VQSLOD
type: SiteQuality
SIO_000300: 1.4e-1

QD
type: SiteQuality
SIO_000300: 1.062e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.349e0

DP
type: SiteQuality
SIO_000300: 3.203828e6

GenotypeDepth
all individuals: 702
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4685
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2039
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6442
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 969
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5415
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3992
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4946
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1401
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 384
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 842
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3184
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4134
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4067
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2343
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7301
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40042
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.780907668231612e-5
allele num: 10224
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.35e-1

DP
type: SiteQuality
SIO_000300: 3.212657e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

FS
type: SiteQuality
SIO_000300: 2.753e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

QD
type: SiteQuality
SIO_000300: 1.123e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeDepth
all individuals: 3184
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4047
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 360
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4783
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6021
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 531
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6444
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 969
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4070
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1401
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4133
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 842
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4949
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 216
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5415
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7454
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40042
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013863773357444e-5
allele num: 66360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.37e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 1.185e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

DP
type: SiteQuality
SIO_000300: 3.214623e6

GenotypeDepth
all individuals: 6306
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5072
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6044
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 142
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3185
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1401
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4193
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4407
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4968
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4129
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 702
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5417
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6449
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 842
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2039
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2292
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2353
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8101
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40047
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2684
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502133028901039e-5
allele num: 66572
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e0

MQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.109e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.292e1

DP
type: SiteQuality
SIO_000300: 3.226744e6

Annotation
canonical: false
consequence: 3_prime_UTR_variant
consequence: splice_region_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137501
ensembl protein: ENSP00000374609
ensembl transcript: ENST00000389959
gene symbol: SYTL2
hgvsc: ENST00000389959.4:c.*621C>T
variant of: http://identifiers.org/hgnc/15585

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000137501
ensembl transcript: ENST00000530894
gene symbol: SYTL2
hgvsc: ENST00000530894.1:n.437C>T
variant of: http://identifiers.org/hgnc/15585

GenotypeDepth
all individuals: 4965
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1400
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4291
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6454
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2039
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5086
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 702
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5417
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 968
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6035
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4212
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6304
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4423
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 843
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4131
bin: 9.75e1
variant carriers: 6

GenotypeDepth
all individuals: 3184
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40051
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2685
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8182
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.703085581214826e-5
allele num: 10306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.009550123130518e-5
allele num: 66596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e-1

DP
type: SiteQuality
SIO_000300: 3.227511e6

FS
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

QD
type: SiteQuality
SIO_000300: 1.148e1

GenotypeDepth
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6306
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6452
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 968
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5137
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4229
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 842
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4471
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5417
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4972
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4292
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3184
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 701
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2039
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1400
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6038
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4127
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 85
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2686
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2332
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40047
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8331
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500285054160291e-5
allele num: 66654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.68e-1

DP
type: SiteQuality
SIO_000300: 3.229067e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e-1

QD
type: SiteQuality
SIO_000300: 1.153e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.437e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeDepth
all individuals: 1399
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 969
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5417
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3184
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6451
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6307
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4482
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6038
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4965
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4124
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 5144
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeDepth
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bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4292
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 842
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4238
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2040
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8370
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2338
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2688
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.228776e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 7.93e-1

FS
type: SiteQuality
SIO_000300: 1.011e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.237e1

GenotypeDepth
all individuals: 4292
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4963
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6452
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4242
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1399
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2040
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3184
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6307
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4488
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6039
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5149
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 969
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4122
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5417
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 842
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40049
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2342
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.05e-1

QD
type: SiteQuality
SIO_000300: 1.288e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.013e0

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.269e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.953e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.82e-1

DP
type: SiteQuality
SIO_000300: 3.22887e6

GenotypeDepth
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4293
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2040
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 842
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6308
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1399
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6455
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 969
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5417
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4245
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5140
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3185
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4489
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4962
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6044
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4121
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
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variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40047
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2342
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8364
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.76e-1

FS
type: SiteQuality
SIO_000300: 1.768e0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 3.229112e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

QD
type: SiteQuality
SIO_000300: 9.85e0

GenotypeDepth
all individuals: 5137
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
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variant carriers: 0

GenotypeDepth
all individuals: 4964
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6043
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 6452
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6308
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 969
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5417
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3186
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4246
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4293
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4493
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2040
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 842
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1399
bin: 7.75e1
variant carriers: 0

GenotypeDepth
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2691
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40050
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8366
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2346
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

QD
type: SiteQuality
SIO_000300: 7.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: -2.509e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.102e0

FS
type: SiteQuality
SIO_000300: 1.206e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.689e1

DP
type: SiteQuality
SIO_000300: 3.229007e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.12e-1

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000137501
ensembl protein: ENSP00000374610
ensembl transcript: ENST00000389960
gene symbol: SYTL2
hgvsc: ENST00000389960.4:c.1908A>G
hgvsp: ENST00000389960.4:c.1908A>G(p.%3D)
variant of: http://identifiers.org/hgnc/15585

GenotypeDepth
all individuals: 970
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 842
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5152
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6041
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4250
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6306
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4292
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3185
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6451
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4966
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4121
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1398
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4501
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5417
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2040
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2363
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2691
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40047
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e0

QD
type: SiteQuality
SIO_000300: 1.398e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.05e-1

DP
type: SiteQuality
SIO_000300: 3.229279e6

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000137501
ensembl protein: ENSP00000432144
ensembl transcript: ENST00000533892
gene symbol: SYTL2
hgvsc: ENST00000533892.1:c.180G>A
hgvsp: ENST00000533892.1:c.180G>A(p.%3D)
variant of: http://identifiers.org/hgnc/15585

GenotypeDepth
all individuals: 4967
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4292
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6453
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1398
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6308
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 843
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4121
bin: 9.75e1
variant carriers: 5

GenotypeDepth
all individuals: 4521
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6040
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 969
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5418
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4251
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5156
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3185
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2040
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2692
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8433
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40050
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2355
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.779010633379565e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 5.991e1

DP
type: SiteQuality
SIO_000300: 3.229916e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.014e0

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.419e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.422e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

Annotation
canonical: false
consequence: 3_prime_UTR_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137501
ensembl protein: ENSP00000374609
ensembl transcript: ENST00000389959
gene symbol: SYTL2
hgvsc: ENST00000389959.4:c.*594C>T
variant of: http://identifiers.org/hgnc/15585

GenotypeDepth
all individuals: 4297
bin: 6.25e1
variant carriers: 50

GenotypeDepth
all individuals: 1346
bin: 7.75e1
variant carriers: 59

GenotypeDepth
all individuals: 567
bin: 9.25e1
variant carriers: 62

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1975
bin: 7.25e1
variant carriers: 53

GenotypeDepth
all individuals: 4983
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4207
bin: 3.25e1
variant carriers: 2

GenotypeDepth
all individuals: 7
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3155
bin: 6.75e1
variant carriers: 50

GenotypeDepth
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5395
bin: 5.75e1
variant carriers: 26

GenotypeDepth
all individuals: 6019
bin: 4.25e1
variant carriers: 13

GenotypeDepth
all individuals: 6447
bin: 4.75e1
variant carriers: 22

GenotypeDepth
all individuals: 6298
bin: 5.25e1
variant carriers: 27

GenotypeDepth
all individuals: 4953
bin: 3.75e1
variant carriers: 10

GenotypeDepth
all individuals: 710
bin: 8.75e1
variant carriers: 65

GenotypeDepth
all individuals: 888
bin: 8.25e1
variant carriers: 54

GenotypeDepth
all individuals: 4456
bin: 2.75e1
variant carriers: 4

GenotypeDepth
all individuals: 4977
bin: 9.75e1
variant carriers: 2448

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8273
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2336
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2304
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40369
bin: 9.75e1
variant carriers: 2946

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 33
allele frequency: 3.176130895091434e-3
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 363
allele frequency: 2.198933850254422e-2
allele num: 16508
num of homozygotes: 7

Other
type: Population
allele count: 21
allele frequency: 2.312775330396476e-2
allele num: 908
num of homozygotes: 1

East Asian
type: Population
allele count: 12
allele frequency: 1.386962552011096e-3
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 303
allele frequency: 4.581191412156033e-2
allele num: 6614
num of homozygotes: 6

European (Non-Finnish)
type: Population
allele count: 1571
allele frequency: 2.354686891093858e-2
allele num: 66718
num of homozygotes: 25

Latino
type: Population
allele count: 704
allele frequency: 6.080497495249611e-2
allele num: 11578
num of homozygotes: 22

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.91e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

QD
type: SiteQuality
SIO_000300: 1.347e1

DP
type: SiteQuality
SIO_000300: 3.363311e6

VQSLOD
type: SiteQuality
SIO_000300: 6.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.14e-1