9-8507483-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8507483
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8507483
    reference: chr 9
allele count: 1
allele frequency: 8.292974192264313e-6
allele num: 120584
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1544-49G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1544-49G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1535-49G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1544-49G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1505-49G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1505-49G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1535-49G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1514-49G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1544-49G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1514-49G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1544-49G>C
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6781
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5265
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

9-8507484-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8507484
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8507484
    reference: chr 9
allele count: 1
allele frequency: 8.288300235387727e-6
allele num: 120652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1535-50T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1544-50T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1514-50T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1505-50T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1544-50T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1535-50T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1514-50T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1505-50T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1544-50T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1544-50T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1544-50T>A
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6781
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4588
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51194
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

9-8517799-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517799
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517799
    reference: chr 9
allele count: 3
allele frequency: 2.702605311520306e-5
allele num: 111004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1543+49A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1504+49A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1543+49A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1543+49A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1513+49A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1534+49A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1534+49A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1504+49A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1543+49A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1543+49A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1513+49A>G
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6140
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10833
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9535
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

9-8517800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517800
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517800
    reference: chr 9
allele count: 1
allele frequency: 9.02185092293535e-6
allele num: 110842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1543+48C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1504+48C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1534+48C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1543+48C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1543+48C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1504+48C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1543+48C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1534+48C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1513+48C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1513+48C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1543+48C>T
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9592
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ

9-8517803-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517803
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517803
    reference: chr 9
allele count: 1
allele frequency: 8.978595029449791e-6
allele num: 111376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1504+45G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1534+45G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1543+45G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1504+45G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1543+45G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1543+45G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1534+45G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1543+45G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1513+45G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1513+45G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1543+45G>A
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-8517804-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517804
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517804
    reference: chr 9
allele count: 1
allele frequency: 8.971023593792052e-6
allele num: 111470
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1543+44G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1513+44G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1504+44G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1534+44G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1513+44G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1504+44G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1543+44G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1534+44G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1543+44G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1543+44G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1543+44G>T
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12929
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS

http://identifiers.org/exac.variant/9-8517805-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517805
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517805
    reference: chr 9
allele count: 1
allele frequency: 8.958165367732689e-6
allele num: 111630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1534+43T>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1543+43T>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1513+43T>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1534+43T>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1543+43T>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1543+43T>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1504+43T>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1543+43T>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1504+43T>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1513+43T>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1543+43T>G
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15970
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-8517808-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517808
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517808
    reference: chr 9
allele count: 1
allele frequency: 8.932878352062602e-6
allele num: 111946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1543+40G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1534+40G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1504+40G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1504+40G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1543+40G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1543+40G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1543+40G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1543+40G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1513+40G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1513+40G>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1534+40G>T
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

9-8517820-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517820
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517820
    reference: chr 9
allele count: 2
allele frequency: 1.771573334278173e-5
allele num: 112894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1504+28G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1534+28G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1543+28G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1543+28G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1543+28G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1534+28G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1543+28G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1513+28G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1504+28G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1513+28G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1543+28G>A
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14023
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

9-8517828-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517828
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517828
    reference: chr 9
allele count: 1
allele frequency: 8.807934187115753e-6
allele num: 113534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1534+20G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1543+20G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1543+20G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1504+20G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1513+20G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1543+20G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1543+20G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1513+20G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1504+20G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1534+20G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1543+20G>A
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

9-8517830-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517830
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517830
    reference: chr 9
allele count: 1
allele frequency: 8.782407082133071e-6
allele num: 113864
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1543+18G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1543+18G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1504+18G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1543+18G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1543+18G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1534+18G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1543+18G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1534+18G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1504+18G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1513+18G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1513+18G>A
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

9-8517832-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517832
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517832
    reference: chr 9
allele count: 3
allele frequency: 2.630148515719521e-5
allele num: 114062
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1504+16G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1543+16G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1534+16G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1504+16G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1543+16G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1543+16G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1534+16G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1513+16G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1543+16G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1513+16G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1543+16G>C
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3309
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

9-8517834-TCAAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517834
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517830
    reference: chr 9
allele count: 1
allele frequency: 8.744469123279526e-6
allele num: 114358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1534+10_1534+13delGTTG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1543+10_1543+13delGTTG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1543+10_1543+13delGTTG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1534+10_1534+13delGTTG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1513+10_1513+13delGTTG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1504+10_1504+13delGTTG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1543+10_1543+13delGTTG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1513+10_1513+13delGTTG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1543+10_1543+13delGTTG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1504+10_1504+13delGTTG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1543+10_1543+13delGTTG
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: TCAAC
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ

9-8517837-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517837
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517837
    reference: chr 9
allele count: 807
allele frequency: 7.035622744154418e-3
allele num: 114702
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1543+11T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1543+11T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1513+11T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1543+11T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1543+11T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1504+11T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1534+11T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1543+11T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1513+11T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1504+11T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1534+11T>C
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 14951
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 11607
  bin: 3.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14702
  bin: 2.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5627
  bin: 3.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 5.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 7401
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 6
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

9-8517838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517838
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517838
    reference: chr 9
allele count: 86
allele frequency: 7.493247364293805e-4
allele num: 114770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1534+10G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1543+10G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1504+10G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1534+10G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1513+10G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1543+10G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1543+10G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1543+10G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1543+10G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1504+10G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1513+10G>A
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11761
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 14982
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14829
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS

9-8517839-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517839
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517839
    reference: chr 9
allele count: 3
allele frequency: 2.610693400167084e-5
allele num: 114912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1543+9G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1543+9G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1534+9G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1504+9G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1504+9G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1534+9G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1543+9G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1513+9G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1543+9G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1513+9G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1543+9G>A
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14874
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-8517845-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517845
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517845
    reference: chr 9
allele count: 1
allele frequency: 8.64020460004493e-6
allele num: 115738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1534+3A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1513+3A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1543+3A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1513+3A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1504+3A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1543+3A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1504+3A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1534+3A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1543+3A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1543+3A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1543+3A>G
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1543+3A>G
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

9-8517852-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517852
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517852
    reference: chr 9
allele count: 1
allele frequency: 8.559445347941453e-6
allele num: 116830
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1509A>C
  hgvsp: ENST00000397617.3:c.1509A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1500A>C
  hgvsp: ENST00000358503.5:c.1500A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1530A>C
  hgvsp: ENST00000537002.1:c.1530A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1500A>C
  hgvsp: ENST00000360074.4:c.1500A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1539A>C
  hgvsp: ENST00000356435.5:c.1539A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1509A>C
  hgvsp: ENST00000397606.3:c.1509A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1539A>C
  hgvsp: ENST00000355233.5:c.1539A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1530A>C
  hgvsp: ENST00000397611.3:c.1530A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1539A>C
  hgvsp: ENST00000486161.1:c.1539A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1539A>C
  hgvsp: ENST00000540109.1:c.1539A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1539A>C
  hgvsp: ENST00000381196.4:c.1539A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr513Thr
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

9-8517854-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517854
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517854
    reference: chr 9
allele count: 1
allele frequency: 8.540438978563499e-6
allele num: 117090
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1528A>G
  hgvsp: ENSP00000440515.1:p.Thr510Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1537A>G
  hgvsp: ENSP00000348812.5:p.Thr513Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1507A>G
  hgvsp: ENSP00000380731.3:p.Thr503Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1537A>G
  hgvsp: ENSP00000370593.3:p.Thr513Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1507A>G
  hgvsp: ENSP00000380741.3:p.Thr503Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1498A>G
  hgvsp: ENSP00000353187.4:p.Thr500Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1528A>G
  hgvsp: ENSP00000380735.3:p.Thr510Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1537A>G
  hgvsp: ENSP00000417093.1:p.Thr513Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1498A>G
  hgvsp: ENSP00000351293.5:p.Thr500Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1537A>G
  hgvsp: ENSP00000438164.1:p.Thr513Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1537A>G
  hgvsp: ENSP00000347373.5:p.Thr513Ala
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr513Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

9-8517857-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517857
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517857
    reference: chr 9
allele count: 2
allele frequency: 1.700362177143732e-5
allele num: 117622
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1495C>G
  hgvsp: ENSP00000351293.5:p.Gln499Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1495C>G
  hgvsp: ENSP00000353187.4:p.Gln499Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1534C>G
  hgvsp: ENSP00000417093.1:p.Gln512Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1534C>G
  hgvsp: ENSP00000347373.5:p.Gln512Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1534C>G
  hgvsp: ENSP00000438164.1:p.Gln512Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1534C>G
  hgvsp: ENSP00000348812.5:p.Gln512Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1525C>G
  hgvsp: ENSP00000440515.1:p.Gln509Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1525C>G
  hgvsp: ENSP00000380735.3:p.Gln509Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1534C>G
  hgvsp: ENSP00000370593.3:p.Gln512Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1504C>G
  hgvsp: ENSP00000380731.3:p.Gln502Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1504C>G
  hgvsp: ENSP00000380741.3:p.Gln502Glu
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln512Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

9-8517861-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517861
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517861
    reference: chr 9
allele count: 2
allele frequency: 1.692992703201449e-5
allele num: 118134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1530C>T
  hgvsp: ENST00000355233.5:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1500C>T
  hgvsp: ENST00000397617.3:c.1500C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1530C>T
  hgvsp: ENST00000540109.1:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1521C>T
  hgvsp: ENST00000537002.1:c.1521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1521C>T
  hgvsp: ENST00000397611.3:c.1521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1530C>T
  hgvsp: ENST00000381196.4:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1500C>T
  hgvsp: ENST00000397606.3:c.1500C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1530C>T
  hgvsp: ENST00000486161.1:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1530C>T
  hgvsp: ENST00000356435.5:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1491C>T
  hgvsp: ENST00000360074.4:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1491C>T
  hgvsp: ENST00000358503.5:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile510Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

9-8517863-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517863
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517863
    reference: chr 9
allele count: 1
allele frequency: 8.448514751106756e-6
allele num: 118364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1519A>G
  hgvsp: ENSP00000440515.1:p.Ile507Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1519A>G
  hgvsp: ENSP00000380735.3:p.Ile507Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1498A>G
  hgvsp: ENSP00000380731.3:p.Ile500Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1498A>G
  hgvsp: ENSP00000380741.3:p.Ile500Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1528A>G
  hgvsp: ENSP00000347373.5:p.Ile510Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1489A>G
  hgvsp: ENSP00000353187.4:p.Ile497Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1528A>G
  hgvsp: ENSP00000438164.1:p.Ile510Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1528A>G
  hgvsp: ENSP00000417093.1:p.Ile510Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1528A>G
  hgvsp: ENSP00000348812.5:p.Ile510Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1489A>G
  hgvsp: ENSP00000351293.5:p.Ile497Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1528A>G
  hgvsp: ENSP00000370593.3:p.Ile510Val
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile510Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

9-8517864-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517864
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517864
    reference: chr 9
allele count: 1
allele frequency: 8.438818565400844e-6
allele num: 118500
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1527C>G
  hgvsp: ENST00000540109.1:c.1527C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1527C>G
  hgvsp: ENST00000355233.5:c.1527C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1497C>G
  hgvsp: ENST00000397606.3:c.1497C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1527C>G
  hgvsp: ENST00000356435.5:c.1527C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1497C>G
  hgvsp: ENST00000397617.3:c.1497C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1488C>G
  hgvsp: ENST00000360074.4:c.1488C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1488C>G
  hgvsp: ENST00000358503.5:c.1488C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1518C>G
  hgvsp: ENST00000537002.1:c.1518C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1518C>G
  hgvsp: ENST00000397611.3:c.1518C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1527C>G
  hgvsp: ENST00000381196.4:c.1527C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1527C>G
  hgvsp: ENST00000486161.1:c.1527C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val509Val
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

9-8517866-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517866
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517866
    reference: chr 9
allele count: 4
allele frequency: 3.368534519057484e-5
allele num: 118746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1525G>A
  hgvsp: ENSP00000348812.5:p.Val509Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1516G>A
  hgvsp: ENSP00000380735.3:p.Val506Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1516G>A
  hgvsp: ENSP00000440515.1:p.Val506Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1525G>A
  hgvsp: ENSP00000417093.1:p.Val509Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1486G>A
  hgvsp: ENSP00000353187.4:p.Val496Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1486G>A
  hgvsp: ENSP00000351293.5:p.Val496Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1525G>A
  hgvsp: ENSP00000438164.1:p.Val509Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1525G>A
  hgvsp: ENSP00000347373.5:p.Val509Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1525G>A
  hgvsp: ENSP00000370593.3:p.Val509Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1495G>A
  hgvsp: ENSP00000380731.3:p.Val499Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1495G>A
  hgvsp: ENSP00000380741.3:p.Val499Ile
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val509Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

9-8517869-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517869
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517869
    reference: chr 9
allele count: 1
allele frequency: 8.394473078924836e-6
allele num: 119126
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1483C>G
  hgvsp: ENSP00000351293.5:p.Gln495Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1522C>G
  hgvsp: ENSP00000370593.3:p.Gln508Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1522C>G
  hgvsp: ENSP00000347373.5:p.Gln508Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1483C>G
  hgvsp: ENSP00000353187.4:p.Gln495Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1492C>G
  hgvsp: ENSP00000380731.3:p.Gln498Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1522C>G
  hgvsp: ENSP00000348812.5:p.Gln508Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1513C>G
  hgvsp: ENSP00000440515.1:p.Gln505Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1522C>G
  hgvsp: ENSP00000438164.1:p.Gln508Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1522C>G
  hgvsp: ENSP00000417093.1:p.Gln508Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1492C>G
  hgvsp: ENSP00000380741.3:p.Gln498Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1513C>G
  hgvsp: ENSP00000380735.3:p.Gln505Glu
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gln508Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

9-8517872-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517872
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517872
    reference: chr 9
allele count: 4
allele frequency: 3.349915414635781e-5
allele num: 119406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1489A>G
  hgvsp: ENSP00000380731.3:p.Ile497Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1519A>G
  hgvsp: ENSP00000417093.1:p.Ile507Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1519A>G
  hgvsp: ENSP00000438164.1:p.Ile507Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1480A>G
  hgvsp: ENSP00000353187.4:p.Ile494Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1519A>G
  hgvsp: ENSP00000370593.3:p.Ile507Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1480A>G
  hgvsp: ENSP00000351293.5:p.Ile494Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1519A>G
  hgvsp: ENSP00000347373.5:p.Ile507Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1489A>G
  hgvsp: ENSP00000380741.3:p.Ile497Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1510A>G
  hgvsp: ENSP00000440515.1:p.Ile504Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1510A>G
  hgvsp: ENSP00000380735.3:p.Ile504Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1519A>G
  hgvsp: ENSP00000348812.5:p.Ile507Val
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17787
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11973
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile507Val
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

9-8517874-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517874
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517874
    reference: chr 9
allele count: 1
allele frequency: 8.362462577979963e-6
allele num: 119582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1517A>G
  hgvsp: ENSP00000417093.1:p.Asp506Gly
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1487A>G
  hgvsp: ENSP00000380731.3:p.Asp496Gly
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1487A>G
  hgvsp: ENSP00000380741.3:p.Asp496Gly
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1478A>G
  hgvsp: ENSP00000353187.4:p.Asp493Gly
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1508A>G
  hgvsp: ENSP00000380735.3:p.Asp503Gly
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1478A>G
  hgvsp: ENSP00000351293.5:p.Asp493Gly
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1517A>G
  hgvsp: ENSP00000370593.3:p.Asp506Gly
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1517A>G
  hgvsp: ENSP00000438164.1:p.Asp506Gly
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1517A>G
  hgvsp: ENSP00000348812.5:p.Asp506Gly
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1508A>G
  hgvsp: ENSP00000440515.1:p.Asp503Gly
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1517A>G
  hgvsp: ENSP00000347373.5:p.Asp506Gly
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15535
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp506Gly
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

9-8517923-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517923
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517923
    reference: chr 9
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1468G>C
  hgvsp: ENSP00000348812.5:p.Val490Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1459G>C
  hgvsp: ENSP00000380735.3:p.Val487Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1429G>C
  hgvsp: ENSP00000351293.5:p.Val477Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1438G>C
  hgvsp: ENSP00000380731.3:p.Val480Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1459G>C
  hgvsp: ENSP00000440515.1:p.Val487Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1438G>C
  hgvsp: ENSP00000380741.3:p.Val480Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1468G>C
  hgvsp: ENSP00000417093.1:p.Val490Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1429G>C
  hgvsp: ENSP00000353187.4:p.Val477Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1468G>C
  hgvsp: ENSP00000438164.1:p.Val490Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1468G>C
  hgvsp: ENSP00000347373.5:p.Val490Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1468G>C
  hgvsp: ENSP00000370593.3:p.Val490Leu
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val490Leu
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

9-8517925-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517925
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517925
    reference: chr 9
allele count: 2
allele frequency: 1.648288252649623e-5
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1466C>G
  hgvsp: ENSP00000347373.5:p.Ser489Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1427C>G
  hgvsp: ENSP00000353187.4:p.Ser476Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1457C>G
  hgvsp: ENSP00000440515.1:p.Ser486Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1427C>G
  hgvsp: ENSP00000351293.5:p.Ser476Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1466C>G
  hgvsp: ENSP00000438164.1:p.Ser489Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1466C>G
  hgvsp: ENSP00000370593.3:p.Ser489Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1466C>G
  hgvsp: ENSP00000348812.5:p.Ser489Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1436C>G
  hgvsp: ENSP00000380731.3:p.Ser479Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1466C>G
  hgvsp: ENSP00000417093.1:p.Ser489Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1457C>G
  hgvsp: ENSP00000380735.3:p.Ser486Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1436C>G
  hgvsp: ENSP00000380741.3:p.Ser479Cys
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser489Cys
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

9-8517942-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517942
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517942
    reference: chr 9
allele count: 3
allele frequency: 2.471943441934048e-5
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1449G>A
  hgvsp: ENST00000356435.5:c.1449G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1410G>A
  hgvsp: ENST00000358503.5:c.1410G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1419G>A
  hgvsp: ENST00000397617.3:c.1419G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1410G>A
  hgvsp: ENST00000360074.4:c.1410G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1449G>A
  hgvsp: ENST00000540109.1:c.1449G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1449G>A
  hgvsp: ENST00000381196.4:c.1449G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1419G>A
  hgvsp: ENST00000397606.3:c.1419G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1440G>A
  hgvsp: ENST00000537002.1:c.1440G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1449G>A
  hgvsp: ENST00000486161.1:c.1449G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1449G>A
  hgvsp: ENST00000355233.5:c.1449G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1440G>A
  hgvsp: ENST00000397611.3:c.1440G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val483Val
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

9-8517948-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517948
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517948
    reference: chr 9
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1443C>T
  hgvsp: ENST00000540109.1:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1413C>T
  hgvsp: ENST00000397606.3:c.1413C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1443C>T
  hgvsp: ENST00000381196.4:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1443C>T
  hgvsp: ENST00000356435.5:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1443C>T
  hgvsp: ENST00000486161.1:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1404C>T
  hgvsp: ENST00000358503.5:c.1404C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1404C>T
  hgvsp: ENST00000360074.4:c.1404C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1434C>T
  hgvsp: ENST00000537002.1:c.1434C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1413C>T
  hgvsp: ENST00000397617.3:c.1413C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1434C>T
  hgvsp: ENST00000397611.3:c.1434C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1443C>T
  hgvsp: ENST00000355233.5:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12219
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn481Asn
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

9-8517949-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517949
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517949
    reference: chr 9
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1412A>G
  hgvsp: ENSP00000380731.3:p.Asn471Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1442A>G
  hgvsp: ENSP00000348812.5:p.Asn481Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1442A>G
  hgvsp: ENSP00000417093.1:p.Asn481Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1442A>G
  hgvsp: ENSP00000438164.1:p.Asn481Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1433A>G
  hgvsp: ENSP00000380735.3:p.Asn478Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1433A>G
  hgvsp: ENSP00000440515.1:p.Asn478Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1403A>G
  hgvsp: ENSP00000351293.5:p.Asn468Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1403A>G
  hgvsp: ENSP00000353187.4:p.Asn468Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1412A>G
  hgvsp: ENSP00000380741.3:p.Asn471Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1442A>G
  hgvsp: ENSP00000370593.3:p.Asn481Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1442A>G
  hgvsp: ENSP00000347373.5:p.Asn481Ser
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn481Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

9-8517951-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517951
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517951
    reference: chr 9
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1401C>G
  hgvsp: ENST00000358503.5:c.1401C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1431C>G
  hgvsp: ENST00000537002.1:c.1431C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1401C>G
  hgvsp: ENST00000360074.4:c.1401C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1440C>G
  hgvsp: ENST00000355233.5:c.1440C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1440C>G
  hgvsp: ENST00000486161.1:c.1440C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1410C>G
  hgvsp: ENST00000397617.3:c.1410C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1440C>G
  hgvsp: ENST00000356435.5:c.1440C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1440C>G
  hgvsp: ENST00000381196.4:c.1440C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1410C>G
  hgvsp: ENST00000397606.3:c.1410C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1440C>G
  hgvsp: ENST00000540109.1:c.1440C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1431C>G
  hgvsp: ENST00000397611.3:c.1431C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18399
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly480Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD

9-8517953-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517953
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517953
    reference: chr 9
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1429G>A
  hgvsp: ENSP00000440515.1:p.Gly477Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1438G>A
  hgvsp: ENSP00000370593.3:p.Gly480Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1438G>A
  hgvsp: ENSP00000348812.5:p.Gly480Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1438G>A
  hgvsp: ENSP00000417093.1:p.Gly480Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1408G>A
  hgvsp: ENSP00000380741.3:p.Gly470Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1438G>A
  hgvsp: ENSP00000438164.1:p.Gly480Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1408G>A
  hgvsp: ENSP00000380731.3:p.Gly470Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1399G>A
  hgvsp: ENSP00000351293.5:p.Gly467Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1438G>A
  hgvsp: ENSP00000347373.5:p.Gly480Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1429G>A
  hgvsp: ENSP00000380735.3:p.Gly477Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1399G>A
  hgvsp: ENSP00000353187.4:p.Gly467Ser
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly480Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

9-8517972-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517972
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517972
    reference: chr 9
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1419C>T
  hgvsp: ENST00000540109.1:c.1419C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1419C>T
  hgvsp: ENST00000486161.1:c.1419C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1389C>T
  hgvsp: ENST00000397617.3:c.1389C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1410C>T
  hgvsp: ENST00000537002.1:c.1410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1380C>T
  hgvsp: ENST00000358503.5:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1389C>T
  hgvsp: ENST00000397606.3:c.1389C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1419C>T
  hgvsp: ENST00000356435.5:c.1419C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1410C>T
  hgvsp: ENST00000397611.3:c.1410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1380C>T
  hgvsp: ENST00000360074.4:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1419C>T
  hgvsp: ENST00000381196.4:c.1419C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1419C>T
  hgvsp: ENST00000355233.5:c.1419C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp473Asp
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-8517992-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517992
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517992
    reference: chr 9
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1360A>T
  hgvsp: ENSP00000351293.5:p.Met454Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1390A>T
  hgvsp: ENSP00000440515.1:p.Met464Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1369A>T
  hgvsp: ENSP00000380731.3:p.Met457Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1399A>T
  hgvsp: ENSP00000347373.5:p.Met467Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1399A>T
  hgvsp: ENSP00000417093.1:p.Met467Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1399A>T
  hgvsp: ENSP00000438164.1:p.Met467Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1390A>T
  hgvsp: ENSP00000380735.3:p.Met464Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1399A>T
  hgvsp: ENSP00000370593.3:p.Met467Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1369A>T
  hgvsp: ENSP00000380741.3:p.Met457Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1360A>T
  hgvsp: ENSP00000353187.4:p.Met454Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1399A>T
  hgvsp: ENSP00000348812.5:p.Met467Leu
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met467Leu
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

9-8517997-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8517997
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8517997
    reference: chr 9
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1394A>G
  hgvsp: ENSP00000347373.5:p.Asn465Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1394A>G
  hgvsp: ENSP00000438164.1:p.Asn465Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1385A>G
  hgvsp: ENSP00000440515.1:p.Asn462Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1364A>G
  hgvsp: ENSP00000380731.3:p.Asn455Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1364A>G
  hgvsp: ENSP00000380741.3:p.Asn455Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1394A>G
  hgvsp: ENSP00000348812.5:p.Asn465Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1355A>G
  hgvsp: ENSP00000353187.4:p.Asn452Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1394A>G
  hgvsp: ENSP00000417093.1:p.Asn465Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1355A>G
  hgvsp: ENSP00000351293.5:p.Asn452Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1385A>G
  hgvsp: ENSP00000380735.3:p.Asn462Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1394A>G
  hgvsp: ENSP00000370593.3:p.Asn465Ser
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn465Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

9-8518008-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518008
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518008
    reference: chr 9
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1383A>G
  hgvsp: ENST00000540109.1:c.1383A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1344A>G
  hgvsp: ENST00000360074.4:c.1344A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1344A>G
  hgvsp: ENST00000358503.5:c.1344A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1383A>G
  hgvsp: ENST00000381196.4:c.1383A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1353A>G
  hgvsp: ENST00000397606.3:c.1353A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1374A>G
  hgvsp: ENST00000397611.3:c.1374A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1353A>G
  hgvsp: ENST00000397617.3:c.1353A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1374A>G
  hgvsp: ENST00000537002.1:c.1374A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1383A>G
  hgvsp: ENST00000355233.5:c.1383A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1383A>G
  hgvsp: ENST00000486161.1:c.1383A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1383A>G
  hgvsp: ENST00000356435.5:c.1383A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln461Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

9-8518011-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518011
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518011
    reference: chr 9
allele count: 4
allele frequency: 3.294947198471145e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1341T>A
  hgvsp: ENST00000360074.4:c.1341T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1380T>A
  hgvsp: ENST00000356435.5:c.1380T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1380T>A
  hgvsp: ENST00000486161.1:c.1380T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1380T>A
  hgvsp: ENST00000355233.5:c.1380T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1341T>A
  hgvsp: ENST00000358503.5:c.1341T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1350T>A
  hgvsp: ENST00000397606.3:c.1350T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1350T>A
  hgvsp: ENST00000397617.3:c.1350T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1371T>A
  hgvsp: ENST00000537002.1:c.1371T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1380T>A
  hgvsp: ENST00000381196.4:c.1380T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1371T>A
  hgvsp: ENST00000397611.3:c.1371T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1380T>A
  hgvsp: ENST00000540109.1:c.1380T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr460Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

9-8518012-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518012
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518012
    reference: chr 9
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1340C>T
  hgvsp: ENSP00000351293.5:p.Thr447Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1340C>T
  hgvsp: ENSP00000353187.4:p.Thr447Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1379C>T
  hgvsp: ENSP00000347373.5:p.Thr460Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1379C>T
  hgvsp: ENSP00000348812.5:p.Thr460Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1370C>T
  hgvsp: ENSP00000440515.1:p.Thr457Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1370C>T
  hgvsp: ENSP00000380735.3:p.Thr457Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1349C>T
  hgvsp: ENSP00000380731.3:p.Thr450Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1349C>T
  hgvsp: ENSP00000380741.3:p.Thr450Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1379C>T
  hgvsp: ENSP00000370593.3:p.Thr460Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1379C>T
  hgvsp: ENSP00000417093.1:p.Thr460Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1379C>T
  hgvsp: ENSP00000438164.1:p.Thr460Ile
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr460Ile
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

9-8518015-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518015
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518015
    reference: chr 9
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1337C>A
  hgvsp: ENSP00000353187.4:p.Pro446His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1346C>A
  hgvsp: ENSP00000380731.3:p.Pro449His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1337C>A
  hgvsp: ENSP00000351293.5:p.Pro446His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1367C>A
  hgvsp: ENSP00000380735.3:p.Pro456His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1367C>A
  hgvsp: ENSP00000440515.1:p.Pro456His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1376C>A
  hgvsp: ENSP00000347373.5:p.Pro459His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1376C>A
  hgvsp: ENSP00000348812.5:p.Pro459His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1376C>A
  hgvsp: ENSP00000370593.3:p.Pro459His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1376C>A
  hgvsp: ENSP00000417093.1:p.Pro459His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1346C>A
  hgvsp: ENSP00000380741.3:p.Pro449His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1376C>A
  hgvsp: ENSP00000438164.1:p.Pro459His
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro459His
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ

9-8518016-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518016
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518016
    reference: chr 9
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1345C>G
  hgvsp: ENSP00000380731.3:p.Pro449Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1366C>G
  hgvsp: ENSP00000380735.3:p.Pro456Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1366C>G
  hgvsp: ENSP00000440515.1:p.Pro456Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1336C>G
  hgvsp: ENSP00000353187.4:p.Pro446Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1375C>G
  hgvsp: ENSP00000438164.1:p.Pro459Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1375C>G
  hgvsp: ENSP00000417093.1:p.Pro459Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1375C>G
  hgvsp: ENSP00000370593.3:p.Pro459Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1336C>G
  hgvsp: ENSP00000351293.5:p.Pro446Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1375C>G
  hgvsp: ENSP00000348812.5:p.Pro459Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1375C>G
  hgvsp: ENSP00000347373.5:p.Pro459Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1345C>G
  hgvsp: ENSP00000380741.3:p.Pro449Ala
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro459Ala
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-8518022-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518022
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518022
    reference: chr 9
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1339A>G
  hgvsp: ENSP00000380731.3:p.Met447Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1330A>G
  hgvsp: ENSP00000353187.4:p.Met444Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1369A>G
  hgvsp: ENSP00000417093.1:p.Met457Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1369A>G
  hgvsp: ENSP00000347373.5:p.Met457Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1369A>G
  hgvsp: ENSP00000348812.5:p.Met457Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1369A>G
  hgvsp: ENSP00000370593.3:p.Met457Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1330A>G
  hgvsp: ENSP00000351293.5:p.Met444Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1360A>G
  hgvsp: ENSP00000380735.3:p.Met454Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1360A>G
  hgvsp: ENSP00000440515.1:p.Met454Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1369A>G
  hgvsp: ENSP00000438164.1:p.Met457Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1339A>G
  hgvsp: ENSP00000380741.3:p.Met447Val
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met457Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

9-8518039-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518039
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518039
    reference: chr 9
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1352A>G
  hgvsp: ENSP00000438164.1:p.Tyr451Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1313A>G
  hgvsp: ENSP00000351293.5:p.Tyr438Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1322A>G
  hgvsp: ENSP00000380731.3:p.Tyr441Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1352A>G
  hgvsp: ENSP00000347373.5:p.Tyr451Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1352A>G
  hgvsp: ENSP00000348812.5:p.Tyr451Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1313A>G
  hgvsp: ENSP00000353187.4:p.Tyr438Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1352A>G
  hgvsp: ENSP00000417093.1:p.Tyr451Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1322A>G
  hgvsp: ENSP00000380741.3:p.Tyr441Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1352A>G
  hgvsp: ENSP00000370593.3:p.Tyr451Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1343A>G
  hgvsp: ENSP00000440515.1:p.Tyr448Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1343A>G
  hgvsp: ENSP00000380735.3:p.Tyr448Cys
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr451Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-8518052-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518052
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518052
    reference: chr 9
allele count: 5601
allele frequency: 4.613597799047792e-2
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1300C>G
  hgvsp: ENSP00000353187.4:p.Gln434Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1339C>G
  hgvsp: ENSP00000417093.1:p.Gln447Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1300C>G
  hgvsp: ENSP00000351293.5:p.Gln434Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1309C>G
  hgvsp: ENSP00000380731.3:p.Gln437Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1339C>G
  hgvsp: ENSP00000347373.5:p.Gln447Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1339C>G
  hgvsp: ENSP00000370593.3:p.Gln447Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1330C>G
  hgvsp: ENSP00000440515.1:p.Gln444Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1330C>G
  hgvsp: ENSP00000380735.3:p.Gln444Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1309C>G
  hgvsp: ENSP00000380741.3:p.Gln437Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1339C>G
  hgvsp: ENSP00000438164.1:p.Gln447Glu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1339C>G
  hgvsp: ENSP00000348812.5:p.Gln447Glu
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5190
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 9.75e1
  variant carriers: 4894
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 15040
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 11088
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16723
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.75e1
  variant carriers: 76
genotype quality: GenotypeQuality
hgvs: p.Gln447Glu
num of homozygotes: 198
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

9-8518056-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518056
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518056
    reference: chr 9
allele count: 34
allele frequency: 2.800520567352519e-4
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1335T>C
  hgvsp: ENST00000356435.5:c.1335T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1335T>C
  hgvsp: ENST00000381196.4:c.1335T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1335T>C
  hgvsp: ENST00000355233.5:c.1335T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1335T>C
  hgvsp: ENST00000540109.1:c.1335T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1305T>C
  hgvsp: ENST00000397606.3:c.1305T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1335T>C
  hgvsp: ENST00000486161.1:c.1335T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1305T>C
  hgvsp: ENST00000397617.3:c.1305T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1296T>C
  hgvsp: ENST00000358503.5:c.1296T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1296T>C
  hgvsp: ENST00000360074.4:c.1296T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1326T>C
  hgvsp: ENST00000537002.1:c.1326T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1326T>C
  hgvsp: ENST00000397611.3:c.1326T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn445Asn
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

9-8518057-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518057
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518057
    reference: chr 9
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1304A>C
  hgvsp: ENSP00000380741.3:p.Asn435Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1325A>C
  hgvsp: ENSP00000380735.3:p.Asn442Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1334A>C
  hgvsp: ENSP00000347373.5:p.Asn445Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1334A>C
  hgvsp: ENSP00000370593.3:p.Asn445Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1334A>C
  hgvsp: ENSP00000417093.1:p.Asn445Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1295A>C
  hgvsp: ENSP00000351293.5:p.Asn432Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1325A>C
  hgvsp: ENSP00000440515.1:p.Asn442Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1334A>C
  hgvsp: ENSP00000348812.5:p.Asn445Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1295A>C
  hgvsp: ENSP00000353187.4:p.Asn432Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1334A>C
  hgvsp: ENSP00000438164.1:p.Asn445Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1304A>C
  hgvsp: ENSP00000380731.3:p.Asn435Thr
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn445Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/9-8518085-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518085
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518085
    reference: chr 9
allele count: 12
allele frequency: 9.885493038965319e-5
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1306G>T
  hgvsp: ENSP00000417093.1:p.Val436Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1267G>T
  hgvsp: ENSP00000351293.5:p.Val423Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1306G>T
  hgvsp: ENSP00000348812.5:p.Val436Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1297G>T
  hgvsp: ENSP00000440515.1:p.Val433Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1276G>T
  hgvsp: ENSP00000380731.3:p.Val426Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1306G>T
  hgvsp: ENSP00000347373.5:p.Val436Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1267G>T
  hgvsp: ENSP00000353187.4:p.Val423Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1306G>T
  hgvsp: ENSP00000370593.3:p.Val436Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1297G>T
  hgvsp: ENSP00000380735.3:p.Val433Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1276G>T
  hgvsp: ENSP00000380741.3:p.Val426Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1306G>T
  hgvsp: ENSP00000438164.1:p.Val436Leu
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
hgvs: p.Val436Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP

9-8518092-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518092
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518092
    reference: chr 9
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1269C>A
  hgvsp: ENST00000397617.3:c.1269C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1290C>A
  hgvsp: ENST00000397611.3:c.1290C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1299C>A
  hgvsp: ENST00000381196.4:c.1299C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1260C>A
  hgvsp: ENST00000358503.5:c.1260C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1299C>A
  hgvsp: ENST00000540109.1:c.1299C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1299C>A
  hgvsp: ENST00000486161.1:c.1299C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1260C>A
  hgvsp: ENST00000360074.4:c.1260C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1299C>A
  hgvsp: ENST00000355233.5:c.1299C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1290C>A
  hgvsp: ENST00000537002.1:c.1290C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1269C>A
  hgvsp: ENST00000397606.3:c.1269C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1299C>A
  hgvsp: ENST00000356435.5:c.1299C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr433Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

9-8518096-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518096
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518096
    reference: chr 9
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1295C>G
  hgvsp: ENSP00000347373.5:p.Thr432Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1295C>G
  hgvsp: ENSP00000438164.1:p.Thr432Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1286C>G
  hgvsp: ENSP00000440515.1:p.Thr429Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1256C>G
  hgvsp: ENSP00000353187.4:p.Thr419Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1295C>G
  hgvsp: ENSP00000417093.1:p.Thr432Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1265C>G
  hgvsp: ENSP00000380731.3:p.Thr422Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1295C>G
  hgvsp: ENSP00000370593.3:p.Thr432Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1295C>G
  hgvsp: ENSP00000348812.5:p.Thr432Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1286C>G
  hgvsp: ENSP00000380735.3:p.Thr429Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1256C>G
  hgvsp: ENSP00000351293.5:p.Thr419Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1265C>G
  hgvsp: ENSP00000380741.3:p.Thr422Ser
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr432Ser
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-8518098-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518098
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518098
    reference: chr 9
allele count: 127
allele frequency: 1.046214679957163e-3
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1293G>T
  hgvsp: ENST00000486161.1:c.1293G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1293G>T
  hgvsp: ENST00000356435.5:c.1293G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1284G>T
  hgvsp: ENST00000397611.3:c.1284G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1254G>T
  hgvsp: ENST00000360074.4:c.1254G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1263G>T
  hgvsp: ENST00000397606.3:c.1263G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1293G>T
  hgvsp: ENST00000381196.4:c.1293G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1284G>T
  hgvsp: ENST00000537002.1:c.1284G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1254G>T
  hgvsp: ENST00000358503.5:c.1254G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1263G>T
  hgvsp: ENST00000397617.3:c.1263G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1293G>T
  hgvsp: ENST00000540109.1:c.1293G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1293G>T
  hgvsp: ENST00000355233.5:c.1293G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 9.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12125
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Ser431Ser
num of homozygotes: 1
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

9-8518098-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518098
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518098
    reference: chr 9
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1263G>A
  hgvsp: ENST00000397606.3:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1263G>A
  hgvsp: ENST00000397617.3:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1293G>A
  hgvsp: ENST00000381196.4:c.1293G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1284G>A
  hgvsp: ENST00000537002.1:c.1284G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1293G>A
  hgvsp: ENST00000356435.5:c.1293G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1284G>A
  hgvsp: ENST00000397611.3:c.1284G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1254G>A
  hgvsp: ENST00000358503.5:c.1254G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1293G>A
  hgvsp: ENST00000486161.1:c.1293G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1293G>A
  hgvsp: ENST00000540109.1:c.1293G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1254G>A
  hgvsp: ENST00000360074.4:c.1254G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1293G>A
  hgvsp: ENST00000355233.5:c.1293G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16069
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser431Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

9-8518099-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518099
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518099
    reference: chr 9
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1292C>T
  hgvsp: ENSP00000347373.5:p.Ser431Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1262C>T
  hgvsp: ENSP00000380741.3:p.Ser421Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1262C>T
  hgvsp: ENSP00000380731.3:p.Ser421Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1292C>T
  hgvsp: ENSP00000370593.3:p.Ser431Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1292C>T
  hgvsp: ENSP00000438164.1:p.Ser431Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1292C>T
  hgvsp: ENSP00000417093.1:p.Ser431Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1283C>T
  hgvsp: ENSP00000440515.1:p.Ser428Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1253C>T
  hgvsp: ENSP00000351293.5:p.Ser418Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1283C>T
  hgvsp: ENSP00000380735.3:p.Ser428Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1292C>T
  hgvsp: ENSP00000348812.5:p.Ser431Leu
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1253C>T
  hgvsp: ENSP00000353187.4:p.Ser418Leu
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser431Leu
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

9-8518113-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518113
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518113
    reference: chr 9
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1239A>G
  hgvsp: ENST00000360074.4:c.1239A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1278A>G
  hgvsp: ENST00000356435.5:c.1278A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1248A>G
  hgvsp: ENST00000397617.3:c.1248A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1269A>G
  hgvsp: ENST00000537002.1:c.1269A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1248A>G
  hgvsp: ENST00000397606.3:c.1248A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1239A>G
  hgvsp: ENST00000358503.5:c.1239A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1278A>G
  hgvsp: ENST00000381196.4:c.1278A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1269A>G
  hgvsp: ENST00000397611.3:c.1269A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1278A>G
  hgvsp: ENST00000355233.5:c.1278A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1278A>G
  hgvsp: ENST00000486161.1:c.1278A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1278A>G
  hgvsp: ENST00000540109.1:c.1278A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala426Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

9-8518128-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518128
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518128
    reference: chr 9
allele count: 4
allele frequency: 3.295924589245398e-5
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1254G>A
  hgvsp: ENST00000537002.1:c.1254G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1263G>A
  hgvsp: ENST00000356435.5:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1263G>A
  hgvsp: ENST00000381196.4:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1263G>A
  hgvsp: ENST00000540109.1:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1224G>A
  hgvsp: ENST00000358503.5:c.1224G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1233G>A
  hgvsp: ENST00000397617.3:c.1233G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1263G>A
  hgvsp: ENST00000486161.1:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1254G>A
  hgvsp: ENST00000397611.3:c.1254G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1233G>A
  hgvsp: ENST00000397606.3:c.1233G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1224G>A
  hgvsp: ENST00000360074.4:c.1224G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1263G>A
  hgvsp: ENST00000355233.5:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro421Pro
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

9-8518132-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518132
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518132
    reference: chr 9
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1250C>T
  hgvsp: ENSP00000380735.3:p.Ala417Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1220C>T
  hgvsp: ENSP00000351293.5:p.Ala407Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1259C>T
  hgvsp: ENSP00000347373.5:p.Ala420Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1229C>T
  hgvsp: ENSP00000380741.3:p.Ala410Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1250C>T
  hgvsp: ENSP00000440515.1:p.Ala417Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1229C>T
  hgvsp: ENSP00000380731.3:p.Ala410Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1259C>T
  hgvsp: ENSP00000348812.5:p.Ala420Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1220C>T
  hgvsp: ENSP00000353187.4:p.Ala407Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1259C>T
  hgvsp: ENSP00000438164.1:p.Ala420Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1259C>T
  hgvsp: ENSP00000417093.1:p.Ala420Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1259C>T
  hgvsp: ENSP00000370593.3:p.Ala420Val
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala420Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

9-8518140-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518140
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518140
    reference: chr 9
allele count: 4
allele frequency: 3.29614186594591e-5
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1212A>G
  hgvsp: ENST00000358503.5:c.1212A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1221A>G
  hgvsp: ENST00000397617.3:c.1221A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1251A>G
  hgvsp: ENST00000381196.4:c.1251A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1221A>G
  hgvsp: ENST00000397606.3:c.1221A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1212A>G
  hgvsp: ENST00000360074.4:c.1212A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1251A>G
  hgvsp: ENST00000486161.1:c.1251A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1242A>G
  hgvsp: ENST00000537002.1:c.1242A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1242A>G
  hgvsp: ENST00000397611.3:c.1242A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1251A>G
  hgvsp: ENST00000540109.1:c.1251A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1251A>G
  hgvsp: ENST00000356435.5:c.1251A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1251A>G
  hgvsp: ENST00000355233.5:c.1251A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro417Pro
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-8518143-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518143
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518143
    reference: chr 9
allele count: 26325
allele frequency: 2.170131732972813e-1
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1239A>G
  hgvsp: ENST00000397611.3:c.1239A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1218A>G
  hgvsp: ENST00000397617.3:c.1218A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1248A>G
  hgvsp: ENST00000355233.5:c.1248A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1248A>G
  hgvsp: ENST00000381196.4:c.1248A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1239A>G
  hgvsp: ENST00000537002.1:c.1239A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1248A>G
  hgvsp: ENST00000486161.1:c.1248A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1209A>G
  hgvsp: ENST00000358503.5:c.1209A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1209A>G
  hgvsp: ENST00000360074.4:c.1209A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1248A>G
  hgvsp: ENST00000356435.5:c.1248A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1218A>G
  hgvsp: ENST00000397606.3:c.1218A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1248A>G
  hgvsp: ENST00000540109.1:c.1248A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 4.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.25e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.75e1
  variant carriers: 281
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.75e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 3.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.75e1
  variant carriers: 306
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 245
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 11351
  bin: 2.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.75e1
  variant carriers: 310
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 3.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 19981
  bin: 9.75e1
  variant carriers: 19875
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 333
genotype depth: GenotypeDepth
  all individuals: 10727
  bin: 2.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.25e1
  variant carriers: 288
genotype quality: GenotypeQuality
hgvs: p.Ala416Ala
num of homozygotes: 3343
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS

9-8518160-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518160
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518160
    reference: chr 9
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1231C>A
  hgvsp: ENSP00000370593.3:p.Gln411Lys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1192C>A
  hgvsp: ENSP00000353187.4:p.Gln398Lys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1222C>A
  hgvsp: ENSP00000440515.1:p.Gln408Lys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1192C>A
  hgvsp: ENSP00000351293.5:p.Gln398Lys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1231C>A
  hgvsp: ENSP00000347373.5:p.Gln411Lys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1201C>A
  hgvsp: ENSP00000380731.3:p.Gln401Lys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1231C>A
  hgvsp: ENSP00000417093.1:p.Gln411Lys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1231C>A
  hgvsp: ENSP00000348812.5:p.Gln411Lys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1231C>A
  hgvsp: ENSP00000438164.1:p.Gln411Lys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1222C>A
  hgvsp: ENSP00000380735.3:p.Gln408Lys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1201C>A
  hgvsp: ENSP00000380741.3:p.Gln401Lys
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gln411Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

9-8518169-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518169
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518169
    reference: chr 9
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1183G>A
  hgvsp: ENSP00000351293.5:p.Val395Met
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1222G>A
  hgvsp: ENSP00000438164.1:p.Val408Met
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1192G>A
  hgvsp: ENSP00000380731.3:p.Val398Met
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1222G>A
  hgvsp: ENSP00000370593.3:p.Val408Met
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1213G>A
  hgvsp: ENSP00000440515.1:p.Val405Met
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1213G>A
  hgvsp: ENSP00000380735.3:p.Val405Met
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1222G>A
  hgvsp: ENSP00000348812.5:p.Val408Met
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1222G>A
  hgvsp: ENSP00000347373.5:p.Val408Met
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1222G>A
  hgvsp: ENSP00000417093.1:p.Val408Met
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1183G>A
  hgvsp: ENSP00000353187.4:p.Val395Met
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1192G>A
  hgvsp: ENSP00000380741.3:p.Val398Met
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val408Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

9-8518170-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518170
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518170
    reference: chr 9
allele count: 4
allele frequency: 3.298098646130506e-5
allele num: 121282
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1221T>C
  hgvsp: ENST00000540109.1:c.1221T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1212T>C
  hgvsp: ENST00000537002.1:c.1212T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1221T>C
  hgvsp: ENST00000356435.5:c.1221T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1182T>C
  hgvsp: ENST00000358503.5:c.1182T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1221T>C
  hgvsp: ENST00000381196.4:c.1221T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1191T>C
  hgvsp: ENST00000397606.3:c.1191T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1182T>C
  hgvsp: ENST00000360074.4:c.1182T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1221T>C
  hgvsp: ENST00000486161.1:c.1221T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1212T>C
  hgvsp: ENST00000397611.3:c.1212T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1191T>C
  hgvsp: ENST00000397617.3:c.1191T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1221T>C
  hgvsp: ENST00000355233.5:c.1221T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8197
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro407Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/9-8518185-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518185
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518185
    reference: chr 9
allele count: 2
allele frequency: 1.649375711293276e-5
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1206G>T
  hgvsp: ENST00000355233.5:c.1206G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1197G>T
  hgvsp: ENST00000397611.3:c.1197G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1167G>T
  hgvsp: ENST00000358503.5:c.1167G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1206G>T
  hgvsp: ENST00000356435.5:c.1206G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1206G>T
  hgvsp: ENST00000540109.1:c.1206G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1176G>T
  hgvsp: ENST00000397606.3:c.1176G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1167G>T
  hgvsp: ENST00000360074.4:c.1167G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1206G>T
  hgvsp: ENST00000486161.1:c.1206G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1206G>T
  hgvsp: ENST00000381196.4:c.1206G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1197G>T
  hgvsp: ENST00000537002.1:c.1197G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1176G>T
  hgvsp: ENST00000397617.3:c.1176G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8196
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly402Gly
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum

9-8518185-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518185
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518185
    reference: chr 9
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1167G>A
  hgvsp: ENST00000358503.5:c.1167G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1206G>A
  hgvsp: ENST00000486161.1:c.1206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1206G>A
  hgvsp: ENST00000355233.5:c.1206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1206G>A
  hgvsp: ENST00000381196.4:c.1206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1206G>A
  hgvsp: ENST00000356435.5:c.1206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1176G>A
  hgvsp: ENST00000397617.3:c.1176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1167G>A
  hgvsp: ENST00000360074.4:c.1167G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1197G>A
  hgvsp: ENST00000397611.3:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1197G>A
  hgvsp: ENST00000537002.1:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1176G>A
  hgvsp: ENST00000397606.3:c.1176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1206G>A
  hgvsp: ENST00000540109.1:c.1206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8196
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly402Gly
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

9-8518188-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518188
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518188
    reference: chr 9
allele count: 24
allele frequency: 1.979381443298969e-4
allele num: 121250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1203G>A
  hgvsp: ENST00000540109.1:c.1203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1164G>A
  hgvsp: ENST00000360074.4:c.1164G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1203G>A
  hgvsp: ENST00000381196.4:c.1203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1164G>A
  hgvsp: ENST00000358503.5:c.1164G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1173G>A
  hgvsp: ENST00000397606.3:c.1173G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1173G>A
  hgvsp: ENST00000397617.3:c.1173G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1203G>A
  hgvsp: ENST00000356435.5:c.1203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1203G>A
  hgvsp: ENST00000486161.1:c.1203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1194G>A
  hgvsp: ENST00000537002.1:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1203G>A
  hgvsp: ENST00000355233.5:c.1203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1194G>A
  hgvsp: ENST00000397611.3:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14224
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8204
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
hgvs: p.Arg401Arg
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/9-8518191-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518191
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518191
    reference: chr 9
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1200G>T
  hgvsp: ENST00000356435.5:c.1200G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1170G>T
  hgvsp: ENST00000397606.3:c.1170G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1200G>T
  hgvsp: ENST00000381196.4:c.1200G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1200G>T
  hgvsp: ENST00000355233.5:c.1200G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1200G>T
  hgvsp: ENST00000540109.1:c.1200G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1200G>T
  hgvsp: ENST00000486161.1:c.1200G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1170G>T
  hgvsp: ENST00000397617.3:c.1170G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1161G>T
  hgvsp: ENST00000358503.5:c.1161G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1161G>T
  hgvsp: ENST00000360074.4:c.1161G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1191G>T
  hgvsp: ENST00000397611.3:c.1191G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1191G>T
  hgvsp: ENST00000537002.1:c.1191G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8186
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly400Gly
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

9-8518196-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518196
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518196
    reference: chr 9
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1195A>G
  hgvsp: ENSP00000370593.3:p.Ile399Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1165A>G
  hgvsp: ENSP00000380731.3:p.Ile389Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1156A>G
  hgvsp: ENSP00000351293.5:p.Ile386Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1195A>G
  hgvsp: ENSP00000348812.5:p.Ile399Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1186A>G
  hgvsp: ENSP00000380735.3:p.Ile396Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1195A>G
  hgvsp: ENSP00000347373.5:p.Ile399Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1165A>G
  hgvsp: ENSP00000380741.3:p.Ile389Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1186A>G
  hgvsp: ENSP00000440515.1:p.Ile396Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1195A>G
  hgvsp: ENSP00000417093.1:p.Ile399Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1195A>G
  hgvsp: ENSP00000438164.1:p.Ile399Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1156A>G
  hgvsp: ENSP00000353187.4:p.Ile386Val
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8186
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile399Val
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

9-8518201-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518201
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518201
    reference: chr 9
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1160A>G
  hgvsp: ENSP00000380741.3:p.Asn387Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1190A>G
  hgvsp: ENSP00000348812.5:p.Asn397Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1190A>G
  hgvsp: ENSP00000370593.3:p.Asn397Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1190A>G
  hgvsp: ENSP00000438164.1:p.Asn397Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1151A>G
  hgvsp: ENSP00000353187.4:p.Asn384Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1181A>G
  hgvsp: ENSP00000440515.1:p.Asn394Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1190A>G
  hgvsp: ENSP00000417093.1:p.Asn397Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1181A>G
  hgvsp: ENSP00000380735.3:p.Asn394Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1151A>G
  hgvsp: ENSP00000351293.5:p.Asn384Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1190A>G
  hgvsp: ENSP00000347373.5:p.Asn397Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1160A>G
  hgvsp: ENSP00000380731.3:p.Asn387Ser
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14240
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn397Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff

9-8518208-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8518208
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8518208
    reference: chr 9
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.1174G>A
  hgvsp: ENSP00000440515.1:p.Ala392Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.1153G>A
  hgvsp: ENSP00000380731.3:p.Ala385Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.1183G>A
  hgvsp: ENSP00000370593.3:p.Ala395Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.1183G>A
  hgvsp: ENSP00000417093.1:p.Ala395Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.1144G>A
  hgvsp: ENSP00000353187.4:p.Ala382Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.1183G>A
  hgvsp: ENSP00000348812.5:p.Ala395Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.1183G>A
  hgvsp: ENSP00000347373.5:p.Ala395Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.1174G>A
  hgvsp: ENSP00000380735.3:p.Ala392Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.1183G>A
  hgvsp: ENSP00000438164.1:p.Ala395Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.1153G>A
  hgvsp: ENSP00000380741.3:p.Ala385Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.1144G>A
  hgvsp: ENSP00000351293.5:p.Ala382Thr
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14242
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala395Thr
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51192
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 956
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504936190705514e-5
allele num: 66448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.36e0

MQRankSum
type: SiteQuality
SIO_000300: 2.35e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.585e0

FS
type: SiteQuality
SIO_000300: 9.54e-1

DP
type: SiteQuality
SIO_000300: 3.926096e6

QD
type: SiteQuality
SIO_000300: 1.397e1

GenotypeQuality
all individuals: 516
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504483360414034e-5
allele num: 66468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

DP
type: SiteQuality
SIO_000300: 3.925978e6

VQSLOD
type: SiteQuality
SIO_000300: -2.277e0

GenotypeQuality
all individuals: 2501
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3385
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12545
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9491
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2714
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1834
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1650
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.721732561067741e-5
allele num: 63536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

DP
type: SiteQuality
SIO_000300: 1.707661e6

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.374e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 676
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12989
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2340
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1783
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3070
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4209
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9473
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1859
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6330
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.887308922858158e-5
allele num: 11252
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.302e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.684e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.710011e6

MQRankSum
type: SiteQuality
SIO_000300: -6.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1160
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4296
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3124
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9508
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 944
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6506
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14388
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3398
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2876
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.199328376109379e-4
allele num: 8338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.72e-1

FS
type: SiteQuality
SIO_000300: 3.108e0

QD
type: SiteQuality
SIO_000300: 1.446e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.211e0

DP
type: SiteQuality
SIO_000300: 1.720957e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.101e0

GenotypeQuality
all individuals: 1664
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4284
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3413
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2936
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15088
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6559
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9527
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1118
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567545537197856e-5
allele num: 63794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.7e-2

QD
type: SiteQuality
SIO_000300: 1.202e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.231e0

DP
type: SiteQuality
SIO_000300: 1.725875e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 9531
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1594
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6651
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2238
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1609
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3112
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1672
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4295
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3431
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.398496240601504e-5
allele num: 10640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63866
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Other
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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African
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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ClippingRankSum
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QD
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MQRankSum
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DP
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BaseQRankSum
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SIO_000300: 1.92e0

ReadPosRankSum
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SIO_000300: -1.429e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele num: 10182
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 64038
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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MQ
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DP
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MQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 9.048136083966703e-5
allele num: 11052
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European (Non-Finnish)
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allele frequency: 1.553229163430773e-5
allele num: 64382
num of homozygotes: 0

DP
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MQ
type: SiteQuality
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MQRankSum
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ClippingRankSum
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VQSLOD
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QD
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FS
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

South Asian
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allele frequency: 8.799718409010911e-5
allele num: 11364
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64600
num of homozygotes: 0

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.944e1

MQRankSum
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SIO_000300: 2.22e-1

QD
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ReadPosRankSum
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SIO_000300: 6.5e-2

BaseQRankSum
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SIO_000300: -3.752e0

ClippingRankSum
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SIO_000300: -1.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.545929567448907e-5
allele num: 64686
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.572e1

FS
type: SiteQuality
SIO_000300: 3.002e0

BaseQRankSum
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SIO_000300: 3.33e-1

DP
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64750
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.52112676056338e-4
allele num: 8520
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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InbreedingCoeff
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FS
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QD
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MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542400592281827e-5
allele num: 64834
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
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Other
type: Population
allele count: 0
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num of homozygotes: 0

East Asian
type: Population
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QD
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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FS
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MQ
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SIO_000300: 5.577e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 570
allele frequency: 8.779496026122852e-3
allele num: 64924
num of homozygotes: 2

Other
type: Population
allele count: 9
allele frequency: 1.073985680190931e-2
allele num: 838
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African
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allele count: 7
allele frequency: 6.801399144966964e-4
allele num: 10292
num of homozygotes: 0

Latino
type: Population
allele count: 22
allele frequency: 1.91737842077741e-3
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 162
allele frequency: 2.469512195121951e-2
allele num: 6560
num of homozygotes: 3

East Asian
type: Population
allele count: 1
allele frequency: 1.169590643274854e-4
allele num: 8550
num of homozygotes: 0

South Asian
type: Population
allele count: 36
allele frequency: 2.984084880636605e-3
allele num: 12064
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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QD
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FS
type: SiteQuality
SIO_000300: 8.83e-1

DP
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12096
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.486750348675035e-4
allele num: 11472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64956
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
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allele count: 82
allele frequency: 7.968901846452867e-3
allele num: 10290
num of homozygotes: 1

BaseQRankSum
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SIO_000300: -2.677e0

MQRankSum
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SIO_000300: 3.02e-1

ClippingRankSum
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SIO_000300: -1.06e-1

DP
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VQSLOD
type: SiteQuality
SIO_000300: 5.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

QD
type: SiteQuality
SIO_000300: 1.417e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.6165209897821e-5
allele num: 64984
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.831766e6

QD
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SIO_000300: 1.346e1

ReadPosRankSum
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SIO_000300: -1.117e0

FS
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SIO_000300: 9.749000000000001e0

BaseQRankSum
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SIO_000300: -6.28e-1

MQ
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SIO_000300: 6.0e1

MQRankSum
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SIO_000300: -1.134e0

VQSLOD
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SIO_000300: -1.337e0

ClippingRankSum
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SIO_000300: 5.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.898894154818325e-5
allele num: 12660
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65244
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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QD
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MQRankSum
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ReadPosRankSum
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SIO_000300: 1.01e0

MQ
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FS
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BaseQRankSum
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SIO_000300: 3.28e0

DP
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SIO_000300: 1.840339e6

VQSLOD
type: SiteQuality
SIO_000300: -2.844e-1

InbreedingCoeff
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SIO_000300: 5.8e-3

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65516
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13412
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.680555555555556e-5
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.872e1

VQSLOD
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SIO_000300: -2.152e0

BaseQRankSum
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SIO_000300: -2.092e0

FS
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SIO_000300: 2.478e0

ClippingRankSum
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SIO_000300: -1.702e0

DP
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MQRankSum
type: SiteQuality
SIO_000300: -1.749e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.38e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 1.391e1

GenotypeDepth
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524808636516117e-5
allele num: 65582
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.85525e6

MQRankSum
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SIO_000300: 1.27e0

InbreedingCoeff
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ReadPosRankSum
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FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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QD
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SIO_000300: 1.054e1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65674
num of homozygotes: 0

Latino
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allele frequency: 1.734304543877905e-4
allele num: 11532
num of homozygotes: 0

Other
type: Population
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ReadPosRankSum
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SIO_000300: -9.8e-1

MQ
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.519710647092794e-5
allele num: 65802
num of homozygotes: 0

African
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num of homozygotes: 0

East Asian
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allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Latino
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South Asian
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Other
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MQRankSum
type: SiteQuality
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FS
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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QD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65860
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.892748828232699e-5
allele num: 14508
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 3.01e0

DP
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VQSLOD
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ReadPosRankSum
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FS
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SIO_000300: 9.737e0

MQRankSum
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SIO_000300: 2.62e-1

InbreedingCoeff
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SIO_000300: 1.17e-2

ClippingRankSum
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SIO_000300: -3.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.202e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14584
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.53e-2

ClippingRankSum
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VQSLOD
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QD
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FS
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DP
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ReadPosRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

MQ
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SIO_000300: 5.942e1

BaseQRankSum
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SIO_000300: -5.620000000000001e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65956
num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 3.464403256539061e-4
allele num: 11546
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.938e1

DP
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SIO_000300: 1.874744e6

VQSLOD
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SIO_000300: 4.71e-1

QD
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ClippingRankSum
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SIO_000300: 1.82e-1

BaseQRankSum
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SIO_000300: -1.239e0

InbreedingCoeff
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SIO_000300: 2.94e-2

FS
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SIO_000300: 5.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

ReadPosRankSum
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SIO_000300: -5.7e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66052
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.628345850182938e-5
allele num: 10386
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Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
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VQSLOD
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BaseQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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QD
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ReadPosRankSum
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SIO_000300: -8.34e-1

MQRankSum
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SIO_000300: -6.28e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15228
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.536518977771057e-5
allele num: 66130
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

Other
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allele count: 0
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ReadPosRankSum
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DP
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VQSLOD
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.511304558094547e-5
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num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
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MQ
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ClippingRankSum
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ReadPosRankSum
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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East Asian
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FS
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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ClippingRankSum
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BaseQRankSum
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MQ
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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QD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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SIO_000300: -1.023e0

MQRankSum
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FS
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MQ
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SIO_000300: 5.968e1

VQSLOD
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SIO_000300: 2.38e0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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South Asian
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European (Non-Finnish)
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Other
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African
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European (Finnish)
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
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MQRankSum
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FS
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MQ
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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FS
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DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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ClippingRankSum
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QD
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VQSLOD
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 66724
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Other
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East Asian
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South Asian
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African
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Latino
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European (Finnish)
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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East Asian
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Latino
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Other
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
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QD
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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South Asian
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European (Non-Finnish)
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East Asian
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African
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Latino
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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DP
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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East Asian
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FS
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DP
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Non-Finnish)
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African
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East Asian
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South Asian
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European (Finnish)
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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MQRankSum
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MQ
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SIO_000300: 5.984e1

ClippingRankSum
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SIO_000300: -7.98e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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BaseQRankSum
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SIO_000300: 5.2e0

ReadPosRankSum
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SIO_000300: 1.12e0

DP
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SIO_000300: 1.909835e6

FS
type: SiteQuality
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MQ
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MQRankSum
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QD
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ClippingRankSum
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SIO_000300: -1.6e0

InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 3.45e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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East Asian
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South Asian
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ClippingRankSum
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DP
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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SIO_000300: 8.93e-1

MQ
type: SiteQuality
SIO_000300: 5.992e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

Other
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allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66730
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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South Asian
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BaseQRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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FS
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VQSLOD
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ReadPosRankSum
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QD
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ClippingRankSum
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SIO_000300: -6.43e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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allele num: 66730
num of homozygotes: 0

East Asian
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Latino
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Other
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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FS
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ReadPosRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele num: 8652
num of homozygotes: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

African
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Latino
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European (Finnish)
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South Asian
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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FS
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

Latino
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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European (Finnish)
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQ
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DP
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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Other
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African
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South Asian
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East Asian
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BaseQRankSum
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VQSLOD
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FS
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QD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8131
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3670
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5015
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.910641e6

FS
type: SiteQuality
SIO_000300: 7.68e-1

QD
type: SiteQuality
SIO_000300: 1.34e1

VQSLOD
type: SiteQuality
SIO_000300: -2.229e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.48e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

MQRankSum
type: SiteQuality
SIO_000300: -2.511e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

GenotypeDepth
all individuals: 1421
bin: 4.75e1
variant carriers: 19

GenotypeQuality
all individuals: 3536
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23953
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2221
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4519
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3325
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1639
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variant carriers: 0

GenotypeQuality
all individuals: 7493
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13982
bin: 9.75e1
variant carriers: 5401

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 73
allele frequency: 7.015183547953104e-3
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1031
allele frequency: 6.243943798449612e-2
allele num: 16512
num of homozygotes: 61

European (Finnish)
type: Population
allele count: 87
allele frequency: 1.315391593589356e-2
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1113
allele frequency: 1.286705202312139e-1
allele num: 8650
num of homozygotes: 67

European (Non-Finnish)
type: Population
allele count: 2824
allele frequency: 4.231599136897626e-2
allele num: 66736
num of homozygotes: 59

Latino
type: Population
allele count: 434
allele frequency: 3.749136143745681e-2
allele num: 11576
num of homozygotes: 8

Other
type: Population
allele count: 39
allele frequency: 4.295154185022027e-2
allele num: 908
num of homozygotes: 3

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.71e-2

QD
type: SiteQuality
SIO_000300: 1.457e1

DP
type: SiteQuality
SIO_000300: 2.618964e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 6.79e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

GenotypeDepth
all individuals: 1849
bin: 9.75e1
variant carriers: 28

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 10805
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variant carriers: 34

GenotypeQuality
all individuals: 8072
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 2401
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1759
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GenotypeQuality
all individuals: 3523
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3820
bin: 8.25e1
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GenotypeQuality
all individuals: 4819
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 3.746104051786142e-4
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.844961240310077e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

DP
type: SiteQuality
SIO_000300: 2.096756e6

GenotypeDepth
all individuals: 221
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 4820
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variant carriers: 0

GenotypeQuality
all individuals: 3821
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8074
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variant carriers: 0

GenotypeQuality
all individuals: 2401
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 10785
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3524
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25492
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.559e1

DP
type: SiteQuality
SIO_000300: 2.093509e6

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.372e0

FS
type: SiteQuality
SIO_000300: 6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.532e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
all individuals: 623
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 25488
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 10792
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2398
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 3519
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4827
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variant carriers: 0

GenotypeQuality
all individuals: 3821
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8067
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.798237727027513e-4
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.344e1

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 4.052e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.862e0

DP
type: SiteQuality
SIO_000300: 2.09487e6

GenotypeDepth
all individuals: 221
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variant carriers: 0

GenotypeQuality
all individuals: 4823
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 10787
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variant carriers: 1

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8070
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3820
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25488
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 2.09e0

BaseQRankSum
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SIO_000300: -5.882e0

MQ
type: SiteQuality
SIO_000300: 5.993e1

VQSLOD
type: SiteQuality
SIO_000300: 2.69e-1

DP
type: SiteQuality
SIO_000300: 2.093976e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10787
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.340000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.093884e6

QD
type: SiteQuality
SIO_000300: 1.465e1

BaseQRankSum
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SIO_000300: 2.94e0

FS
type: SiteQuality
SIO_000300: 3.701e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.374e0

GenotypeDepth
all individuals: 928
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 1753
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GenotypeQuality
all individuals: 10879
bin: 9.75e1
variant carriers: 126

GenotypeQuality
all individuals: 3511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4807
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 57
allele frequency: 8.541885209051401e-4
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 69
allele frequency: 4.179285281647486e-3
allele num: 16510
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.68e-2

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

QD
type: SiteQuality
SIO_000300: 1.355e1

DP
type: SiteQuality
SIO_000300: 2.107021e6

GenotypeDepth
all individuals: 1926
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4807
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8055
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10879
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.68e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.02e0

DP
type: SiteQuality
SIO_000300: 2.107021e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-1

QD
type: SiteQuality
SIO_000300: 1.355e1

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeDepth
all individuals: 320
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 25504
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variant carriers: 0

GenotypeQuality
all individuals: 2392
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3517
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4818
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.71e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.233e0

DP
type: SiteQuality
SIO_000300: 2.09521e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.228e1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

GenotypeDepth
all individuals: 1627
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3516
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2391
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25497
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10785
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4814
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3814
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 8077
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.487e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

QD
type: SiteQuality
SIO_000300: 1.15e1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

DP
type: SiteQuality
SIO_000300: 2.094906e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.048e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
all individuals: 403
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 3814
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4811
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8056
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10784
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3513
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25462
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.923446816695518e-4
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998141152485459e-5
allele num: 66708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 5.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

VQSLOD
type: SiteQuality
SIO_000300: 2.56e0

MQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.094497e6

GenotypeDepth
all individuals: 190
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8043
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10783
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3815
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4810
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.13e-1

QD
type: SiteQuality
SIO_000300: 1.315e1

VQSLOD
type: SiteQuality
SIO_000300: 9.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.718e0

FS
type: SiteQuality
SIO_000300: 5.269e0

MQ
type: SiteQuality
SIO_000300: 5.991e1

DP
type: SiteQuality
SIO_000300: 2.094032e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.24e-1

GenotypeDepth
all individuals: 269
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
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GenotypeQuality
all individuals: 1752
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10784
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3816
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8041
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.624277456647399e-4
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.932e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.47e1

VQSLOD
type: SiteQuality
SIO_000300: 6.35e-1

DP
type: SiteQuality
SIO_000300: 2.093882e6

MQRankSum
type: SiteQuality
SIO_000300: 8.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

GenotypeDepth
all individuals: 362
bin: 8.25e1
variant carriers: 310

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 14
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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bin: 2.5e0
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1177
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 910
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2746
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 26754
bin: 9.75e1
variant carriers: 22937

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5471
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2071
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 51
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2052
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 10927
allele frequency: 1.638525671785029e-1
allele num: 66688
num of homozygotes: 912

East Asian
type: Population
allele count: 3309
allele frequency: 3.833410565338276e-1
allele num: 8632
num of homozygotes: 636

Latino
type: Population
allele count: 3064
allele frequency: 2.649144042884316e-1
allele num: 11566
num of homozygotes: 420

European (Finnish)
type: Population
allele count: 917
allele frequency: 1.38645297853039e-1
allele num: 6614
num of homozygotes: 64

African
type: Population
allele count: 4119
allele frequency: 3.962100808003078e-1
allele num: 10396
num of homozygotes: 816

South Asian
type: Population
allele count: 3791
allele frequency: 2.297297297297297e-1
allele num: 16502
num of homozygotes: 470

Other
type: Population
allele count: 198
allele frequency: 2.180616740088106e-1
allele num: 908
num of homozygotes: 25

QD
type: SiteQuality
SIO_000300: 1.641e1

VQSLOD
type: SiteQuality
SIO_000300: 7.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.85e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 4.733436e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 10854
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23715
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2713
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

ReadPosRankSum
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SIO_000300: 2.44e0

BaseQRankSum
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SIO_000300: -3.49e0

VQSLOD
type: SiteQuality
SIO_000300: 3.0e-2

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
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SIO_000300: 2.0e-3

ClippingRankSum
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SIO_000300: -1.825e0

FS
type: SiteQuality
SIO_000300: 2.697e0

DP
type: SiteQuality
SIO_000300: 2.871822e6

QD
type: SiteQuality
SIO_000300: 1.296e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1625
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variant carriers: 0

GenotypeQuality
all individuals: 2711
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.823e-1

InbreedingCoeff
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SIO_000300: 6.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: -1.249e0

BaseQRankSum
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SIO_000300: -4.277e0

DP
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SIO_000300: 2.870381e6

FS
type: SiteQuality
SIO_000300: 9.712999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.045e0

QD
type: SiteQuality
SIO_000300: 1.203e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.31e-1

GenotypeDepth
all individuals: 638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 2615
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.470615455807496e-4
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.471e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.026e0

VQSLOD
type: SiteQuality
SIO_000300: 7.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.29e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.19e1

DP
type: SiteQuality
SIO_000300: 2.870217e6

GenotypeDepth
all individuals: 803
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 71
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 1626
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GenotypeQuality
all individuals: 2710
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.355e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
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ReadPosRankSum
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SIO_000300: 5.06e-1

MQRankSum
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ClippingRankSum
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SIO_000300: 2.14e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 2.868473e6

FS
type: SiteQuality
SIO_000300: 3.172e0

BaseQRankSum
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SIO_000300: -5.156e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.06e-1

MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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FS
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 2.868473e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 2.024681835711531e-3
allele num: 10372
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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Latino
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allele count: 3
allele frequency: 2.593809441466367e-4
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66650
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MQ
type: SiteQuality
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1167
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

Other
type: Population
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.03e-1

FS
type: SiteQuality
SIO_000300: 3.044e0

DP
type: SiteQuality
SIO_000300: 2.866528e6

QD
type: SiteQuality
SIO_000300: 8.300000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.91e0

VQSLOD
type: SiteQuality
SIO_000300: -1.952e-1

GenotypeDepth
all individuals: 704
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2704
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23525
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17867
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3565
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7038
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.398e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.68e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

FS
type: SiteQuality
SIO_000300: 3.279e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 2.86638e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

GenotypeDepth
all individuals: 8186
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2702
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23503
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7026
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3564
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17866
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.33e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 2.866156e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

QD
type: SiteQuality
SIO_000300: 1.38e1

FS
type: SiteQuality
SIO_000300: 7.325e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.01e-2

GenotypeDepth
all individuals: 704
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3562
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7006
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0