12-122763548-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763548
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763548
    reference: chr 12
allele count: 1
allele frequency: 8.294074713025015e-6
allele num: 120568
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3732+27C>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3732+27C>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1851+27C>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3627+27C>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3765+27C>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2490+27C>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.1031+27C>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3399+27C>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.120+27C>G
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12951
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

12-122763551-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763551
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763551
    reference: chr 12
allele count: 29
allele frequency: 2.406079915040489e-4
allele num: 120528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3732+24G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3765+24G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3732+24G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.1031+24G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1851+24G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2490+24G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3627+24G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.120+24G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3399+24G>A
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8345
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4468
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12954
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

12-122763552-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763552
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763552
    reference: chr 12
allele count: 18
allele frequency: 1.492982979994028e-4
allele num: 120564
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3765+23C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3732+23C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3399+23C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3732+23C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1851+23C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.120+23C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.1031+23C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2490+23C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3627+23C>T
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 9171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7524
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4472
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4584
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-122763560-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763560
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763560
    reference: chr 12
allele count: 72
allele frequency: 5.966982695750182e-4
allele num: 120664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1851+15A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.1031+15A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3732+15A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3627+15A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3732+15A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3765+15A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.120+15A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2490+15A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3399+15A>G
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 9.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5240
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4463
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

12-122763564-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763564
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763564
    reference: chr 12
allele count: 10
allele frequency: 8.285827919925758e-5
allele num: 120688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2490+11A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1851+11A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3732+11A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.120+11A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3732+11A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.1031+11A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3627+11A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3399+11A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3765+11A>T
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8754
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10215
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4589
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

12-122763566-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763566
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763566
    reference: chr 12
allele count: 2
allele frequency: 1.656561640658649e-5
allele num: 120732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3627+9C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2490+9C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3399+9C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.1031+9C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3765+9C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1851+9C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3732+9C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.120+9C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3732+9C>A
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

12-122763571-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763571
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763571
    reference: chr 12
allele count: 1
allele frequency: 8.278556881964336e-6
allele num: 120794
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3732+4G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3765+4G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3399+4G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2490+4G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.1031+4G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3627+4G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3732+4G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.120+4G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1851+4G>C
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3291
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
hgvs: c.3765+4G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

12-122763587-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763587
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763587
    reference: chr 12
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.1019A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3615A>G
  hgvsp: ENST00000537178.1:c.3615A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3720A>G
  hgvsp: ENST00000302528.7:c.3720A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3753A>G
  hgvsp: ENST00000540338.1:c.3753A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1839A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.108A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2478A>G
  hgvsp: ENST00000545889.1:c.2478A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3387A>G
  hgvsp: ENST00000361654.4:c.3387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3720A>G
  hgvsp: ENST00000358808.2:c.3720A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10254
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4587
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14872
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4474
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys1251Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-122763598-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763598
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763598
    reference: chr 12
allele count: 2
allele frequency: 1.650818806127839e-5
allele num: 121152
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3742G>A
  hgvsp: ENSP00000439093.1:p.Glu1248Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1828G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3604G>A
  hgvsp: ENSP00000445531.1:p.Glu1202Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3376G>A
  hgvsp: ENSP00000355314.4:p.Glu1126Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3709G>A
  hgvsp: ENSP00000351665.2:p.Glu1237Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2467G>A
  hgvsp: ENSP00000438743.1:p.Glu823Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.1008G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.97G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3709G>A
  hgvsp: ENSP00000303585.7:p.Glu1237Lys
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4475
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20708
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu1248Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

12-122763598-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763598
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763597
    reference: chr 12
allele count: 1
allele frequency: 8.254094030639197e-6
allele num: 121152
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3375delC
  hgvsp: ENSP00000355314.4:p.Glu1126SerfsTer5
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3708delC
  hgvsp: ENSP00000351665.2:p.Glu1237SerfsTer5
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1827delC
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.96delC
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3741delC
  hgvsp: ENSP00000439093.1:p.Glu1248SerfsTer5
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3708delC
  hgvsp: ENSP00000303585.7:p.Glu1237SerfsTer5
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3603delC
  hgvsp: ENSP00000445531.1:p.Glu1202SerfsTer5
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.1007delC
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2466delC
  hgvsp: ENSP00000438743.1:p.Glu823SerfsTer5
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9505
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4475
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5373
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu1248SerfsTer5
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: CG
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

12-122763599-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763599
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763599
    reference: chr 12
allele count: 6
allele frequency: 4.951884191935031e-5
allele num: 121166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3603C>T
  hgvsp: ENST00000537178.1:c.3603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1827C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3708C>T
  hgvsp: ENST00000302528.7:c.3708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3741C>T
  hgvsp: ENST00000540338.1:c.3741C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3375C>T
  hgvsp: ENST00000361654.4:c.3375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.96C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.1007C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2466C>T
  hgvsp: ENST00000545889.1:c.2466C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3708C>T
  hgvsp: ENST00000358808.2:c.3708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4588
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala1247Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

12-122763599-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763599
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763599
    reference: chr 12
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3741C>A
  hgvsp: ENST00000540338.1:c.3741C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3708C>A
  hgvsp: ENST00000358808.2:c.3708C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.1007C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2466C>A
  hgvsp: ENST00000545889.1:c.2466C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3603C>A
  hgvsp: ENST00000537178.1:c.3603C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3375C>A
  hgvsp: ENST00000361654.4:c.3375C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.96C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1827C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3708C>A
  hgvsp: ENST00000302528.7:c.3708C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala1247Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

12-122763621-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763621
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763621
    reference: chr 12
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2444C>T
  hgvsp: ENSP00000438743.1:p.Ala815Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3686C>T
  hgvsp: ENSP00000303585.7:p.Ala1229Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3686C>T
  hgvsp: ENSP00000351665.2:p.Ala1229Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1805C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3719C>T
  hgvsp: ENSP00000439093.1:p.Ala1240Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.985C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3581C>T
  hgvsp: ENSP00000445531.1:p.Ala1194Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3353C>T
  hgvsp: ENSP00000355314.4:p.Ala1118Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.74C>T
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4583
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala1240Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

12-122763646-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763646
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763646
    reference: chr 12
allele count: 2
allele frequency: 1.649702228747711e-5
allele num: 121234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3661C>A
  hgvsp: ENSP00000351665.2:p.Gln1221Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1780C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3661C>A
  hgvsp: ENSP00000303585.7:p.Gln1221Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3328C>A
  hgvsp: ENSP00000355314.4:p.Gln1110Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2419C>A
  hgvsp: ENSP00000438743.1:p.Gln807Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3556C>A
  hgvsp: ENSP00000445531.1:p.Gln1186Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3694C>A
  hgvsp: ENSP00000439093.1:p.Gln1232Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.49C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.960C>A
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20708
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln1232Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-122763670-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763670
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763670
    reference: chr 12
allele count: 592
allele frequency: 4.903260005300822e-3
allele num: 120736
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3670G>T
  hgvsp: ENSP00000439093.1:p.Ala1224Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.936G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3532G>T
  hgvsp: ENSP00000445531.1:p.Ala1178Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.25G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2395G>T
  hgvsp: ENSP00000438743.1:p.Ala799Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3304G>T
  hgvsp: ENSP00000355314.4:p.Ala1102Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3637G>T
  hgvsp: ENSP00000303585.7:p.Ala1213Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3637G>T
  hgvsp: ENSP00000351665.2:p.Ala1213Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1756G>T
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10197
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9222
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7453
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 461
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9985
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 8909
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5291
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala1224Ser
num of homozygotes: 1
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

12-122763670-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763670
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763670
    reference: chr 12
allele count: 7
allele frequency: 5.797773654916512e-5
allele num: 120736
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3670G>A
  hgvsp: ENSP00000439093.1:p.Ala1224Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3532G>A
  hgvsp: ENSP00000445531.1:p.Ala1178Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.25G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1756G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3637G>A
  hgvsp: ENSP00000303585.7:p.Ala1213Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3637G>A
  hgvsp: ENSP00000351665.2:p.Ala1213Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2395G>A
  hgvsp: ENSP00000438743.1:p.Ala799Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.936G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3304G>A
  hgvsp: ENSP00000355314.4:p.Ala1102Thr
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9985
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7453
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8909
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4521
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala1224Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

12-122763671-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763671
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763671
    reference: chr 12
allele count: 3
allele frequency: 2.485871961021528e-5
allele num: 120682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3531C>T
  hgvsp: ENST00000537178.1:c.3531C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3669C>T
  hgvsp: ENST00000540338.1:c.3669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3636C>T
  hgvsp: ENST00000302528.7:c.3636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3303C>T
  hgvsp: ENST00000361654.4:c.3303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1755C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.935C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2394C>T
  hgvsp: ENST00000545889.1:c.2394C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.24C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3636C>T
  hgvsp: ENST00000358808.2:c.3636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20905
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 14770
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp1223Asp
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-122763679-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763679
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763679
    reference: chr 12
allele count: 3
allele frequency: 2.495549603207613e-5
allele num: 120214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1747A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3523A>C
  hgvsp: ENSP00000445531.1:p.Ile1175Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3661A>C
  hgvsp: ENSP00000439093.1:p.Ile1221Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.16A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3295A>C
  hgvsp: ENSP00000355314.4:p.Ile1099Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.927A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3628A>C
  hgvsp: ENSP00000303585.7:p.Ile1210Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2386A>C
  hgvsp: ENSP00000438743.1:p.Ile796Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3628A>C
  hgvsp: ENSP00000351665.2:p.Ile1210Leu
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4534
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile1221Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

12-122763689-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763689
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763689
    reference: chr 12
allele count: 2
allele frequency: 1.673444115333769e-5
allele num: 119514
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3651A>T
  hgvsp: ENSP00000439093.1:p.Glu1217Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3618A>T
  hgvsp: ENSP00000303585.7:p.Glu1206Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1737A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.917A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3618A>T
  hgvsp: ENSP00000351665.2:p.Glu1206Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2376A>T
  hgvsp: ENSP00000438743.1:p.Glu792Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3513A>T
  hgvsp: ENSP00000445531.1:p.Glu1171Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000536634
  gene symbol: CLIP1
  hgvsc: ENST00000536634.1:n.6A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3285A>T
  hgvsp: ENSP00000355314.4:p.Glu1095Asp
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3242
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu1217Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

12-122763694-T-TTTTTTTCATTTCTAACAACTGATTATTGAGCACAGATCTTTCTTCTTCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763694
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763743
    reference: chr 12
allele count: 1
allele frequency: 8.399832003359932e-6
allele num: 119050
alternate allele: TTTTTTTCATTTCTAACAACTGATTATTGAGCACAGATCTTTCTTCTTCC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 10104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4434
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5114
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12382
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-122763694-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763694
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763693
    reference: chr 12
allele count: 1
allele frequency: 8.399832003359932e-6
allele num: 119050
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3648-3delT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3615-3delT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1731delT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2373-3delT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3510-3delT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3282-3delT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3615-3delT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.911delT
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4434
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12382
  bin: 6.25e1
  variant carriers: 0
hgvs: c.3648-3delT
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: TA
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-122763697-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763697
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763697
    reference: chr 12
allele count: 1
allele frequency: 8.41779184484326e-6
allele num: 118796
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3648-5T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1729T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.909T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3282-5T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3615-5T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3615-5T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3510-5T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2373-5T>C
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4432
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11868
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
hgvs: c.3648-5T>C
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: DP

12-122763716-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763716
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763716
    reference: chr 12
allele count: 3
allele frequency: 2.543968251276224e-5
allele num: 117926
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3510-24A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.890A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1710A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3615-24A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3615-24A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3282-24A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3648-24A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2373-24A>G
  variant of: http://identifiers.org/hgnc/10461
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10378
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

12-122763730-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763730
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763730
    reference: chr 12
allele count: 12
allele frequency: 1.030078285949732e-4
allele num: 116496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1696G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3615-38G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3615-38G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3510-38G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2373-38G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3282-38G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.876G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3648-38G>A
  variant of: http://identifiers.org/hgnc/10461
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9992
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4509
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2897
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20903
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 4890
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-122763731-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763731
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763731
    reference: chr 12
allele count: 1
allele frequency: 8.586491731208463e-6
allele num: 116462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3510-39C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2373-39C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.875C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3615-39C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3282-39C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3648-39C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3615-39C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1695C>T
  variant of: http://identifiers.org/hgnc/10461
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2724
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

12-122763732-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763732
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763732
    reference: chr 12
allele count: 1
allele frequency: 8.582070338648495e-6
allele num: 116522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3282-40T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3615-40T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3510-40T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.874T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2373-40T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3615-40T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1694T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3648-40T>C
  variant of: http://identifiers.org/hgnc/10461
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3851
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2724
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

12-122763732-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763732
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763732
    reference: chr 12
allele count: 5
allele frequency: 4.291035169324248e-5
allele num: 116522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3282-40T>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3615-40T>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3510-40T>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1694T>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3615-40T>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3648-40T>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2373-40T>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.874T>A
  variant of: http://identifiers.org/hgnc/10461
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4514
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

12-122763737-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763737
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763737
    reference: chr 12
allele count: 1
allele frequency: 8.618015098762453e-6
allele num: 116036
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1689G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3648-45G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.869G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3510-45G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2373-45G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3615-45G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3282-45G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3615-45G>C
  variant of: http://identifiers.org/hgnc/10461
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3849
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

12-122763738-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763738
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763739
    reference: chr 12
allele count: 1
allele frequency: 8.619203585588691e-6
allele num: 116020
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3615-47_3615-46insG
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3282-47_3282-46insG
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3510-47_3510-46insG
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2373-47_2373-46insG
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.867_868insG
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1687_1688insG
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3648-47_3648-46insG
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3615-47_3615-46insG
  variant of: http://identifiers.org/hgnc/10461
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20907
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3849
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

12-122763739-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122763739
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122763739
    reference: chr 12
allele count: 1
allele frequency: 8.627681051886874e-6
allele num: 115906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2373-47C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3648-47C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000543205
  gene symbol: CLIP1
  hgvsc: ENST00000543205.1:n.867C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3510-47C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3615-47C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3282-47C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130779
  ensembl transcript: ENST00000538120
  gene symbol: CLIP1
  hgvsc: ENST00000538120.1:n.1687C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3615-47C>T
  variant of: http://identifiers.org/hgnc/10461
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4515
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2447
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3849
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4866
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2728
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

12-122772994-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122772994
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122772994
    reference: chr 12
allele count: 2
allele frequency: 1.752234098475556e-5
allele num: 114140
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3281+42A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3647+42A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2372+42A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3614+42A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3614+42A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3509+42A>C
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9737
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19188
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10618
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4182
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4650
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3918
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3827
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3818
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/12-122773000-AAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773000
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122772998
    reference: chr 12
allele count: 11
allele frequency: 9.672540536738067e-5
allele num: 113724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3614+34_3614+35delGT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3614+34_3614+35delGT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3647+34_3647+35delGT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2372+34_2372+35delGT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3281+34_3281+35delGT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3509+34_3509+35delGT
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22287
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6382
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7891
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11588
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3609
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4049
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3682
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26596
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: AAC
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

12-122773012-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773012
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773012
    reference: chr 12
allele count: 5
allele frequency: 4.294278303588299e-5
allele num: 116434
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3647+24A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3614+24A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3614+24A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3509+24A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3281+24A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2372+24A>T
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26371
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3018
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34252
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2342
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

12-122773024-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773024
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773024
    reference: chr 12
allele count: 1
allele frequency: 8.505860537910621e-6
allele num: 117566
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3281+12G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3614+12G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3614+12G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3509+12G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2372+12G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3647+12G>C
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14636
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39305
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4176
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-122773036-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773036
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773036
    reference: chr 12
allele count: 1
allele frequency: 8.456516591685553e-6
allele num: 118252
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3647G>T
  hgvsp: ENSP00000439093.1:p.Arg1216Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2372G>T
  hgvsp: ENSP00000438743.1:p.Arg791Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3614G>T
  hgvsp: ENSP00000303585.7:p.Arg1205Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3509G>T
  hgvsp: ENSP00000445531.1:p.Arg1170Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3281G>T
  hgvsp: ENSP00000355314.4:p.Arg1094Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3614G>T
  hgvsp: ENSP00000351665.2:p.Arg1205Ile
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 15707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg1216Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

12-122773036-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773036
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773035
    reference: chr 12
allele count: 1
allele frequency: 8.456516591685553e-6
allele num: 118252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3613delA
  hgvsp: ENSP00000351665.2:p.Arg1205GlufsTer6
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3280delA
  hgvsp: ENSP00000355314.4:p.Arg1094GlufsTer6
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3613delA
  hgvsp: ENSP00000303585.7:p.Arg1205GlufsTer6
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2371delA
  hgvsp: ENSP00000438743.1:p.Arg791GlufsTer6
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3646delA
  hgvsp: ENSP00000439093.1:p.Arg1216GlufsTer6
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3508delA
  hgvsp: ENSP00000445531.1:p.Arg1170GlufsTer6
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15707
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40540
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg1216GlufsTer6
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: CT
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS

12-122773041-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773041
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773041
    reference: chr 12
allele count: 1
allele frequency: 8.418500496691529e-6
allele num: 118786
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3609A>G
  hgvsp: ENST00000358808.2:c.3609A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3642A>G
  hgvsp: ENST00000540338.1:c.3642A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2367A>G
  hgvsp: ENST00000545889.1:c.2367A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3504A>G
  hgvsp: ENST00000537178.1:c.3504A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3276A>G
  hgvsp: ENST00000361654.4:c.3276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3609A>G
  hgvsp: ENST00000302528.7:c.3609A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30844
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4176
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys1214Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

12-122773053-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773053
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773053
    reference: chr 12
allele count: 1
allele frequency: 8.381808123648433e-6
allele num: 119306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3597G>C
  hgvsp: ENSP00000351665.2:p.Leu1199Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3264G>C
  hgvsp: ENSP00000355314.4:p.Leu1088Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3492G>C
  hgvsp: ENSP00000445531.1:p.Leu1164Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2355G>C
  hgvsp: ENSP00000438743.1:p.Leu785Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3597G>C
  hgvsp: ENSP00000303585.7:p.Leu1199Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3630G>C
  hgvsp: ENSP00000439093.1:p.Leu1210Phe
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16667
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5452
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43237
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu1210Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

12-122773055-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773055
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773055
    reference: chr 12
allele count: 1
allele frequency: 8.378296859814337e-6
allele num: 119356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3490T>C
  hgvsp: ENST00000537178.1:c.3490T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2353T>C
  hgvsp: ENST00000545889.1:c.2353T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3595T>C
  hgvsp: ENST00000302528.7:c.3595T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3595T>C
  hgvsp: ENST00000358808.2:c.3595T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3262T>C
  hgvsp: ENST00000361654.4:c.3262T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3628T>C
  hgvsp: ENST00000540338.1:c.3628T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43411
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu1210Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

12-122773065-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773065
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773065
    reference: chr 12
allele count: 4
allele frequency: 3.35098183767844e-5
allele num: 119368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2343C>A
  hgvsp: ENST00000545889.1:c.2343C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3618C>A
  hgvsp: ENST00000540338.1:c.3618C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3585C>A
  hgvsp: ENST00000358808.2:c.3585C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3252C>A
  hgvsp: ENST00000361654.4:c.3252C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3585C>A
  hgvsp: ENST00000302528.7:c.3585C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3480C>A
  hgvsp: ENST00000537178.1:c.3480C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16946
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43318
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu1206Leu
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ

12-122773074-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773074
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773074
    reference: chr 12
allele count: 2
allele frequency: 1.678556441460344e-5
allele num: 119150
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3576A>G
  hgvsp: ENST00000358808.2:c.3576A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3471A>G
  hgvsp: ENST00000537178.1:c.3471A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3576A>G
  hgvsp: ENST00000302528.7:c.3576A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3609A>G
  hgvsp: ENST00000540338.1:c.3609A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2334A>G
  hgvsp: ENST00000545889.1:c.2334A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3243A>G
  hgvsp: ENST00000361654.4:c.3243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30606
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4178
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5484
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg1203Arg
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

12-122773093-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773093
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773093
    reference: chr 12
allele count: 9
allele frequency: 7.624921632749885e-5
allele num: 118034
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3595-5C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3562-5C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3562-5C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3457-5C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3229-5C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2320-5C>T
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17289
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27872
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5331
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
hgvs: c.3595-5C>T
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

12-122773096-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773096
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773096
    reference: chr 12
allele count: 1
allele frequency: 8.49689863199932e-6
allele num: 117690
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3595-8T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3562-8T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2320-8T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3562-8T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3229-8T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3457-8T>C
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3961
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4173
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
hgvs: c.3595-8T>C
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

12-122773101-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773101
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773101
    reference: chr 12
allele count: 1
allele frequency: 8.502244592572439e-6
allele num: 117616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3457-13G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2320-13G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3229-13G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3595-13G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3562-13G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3562-13G>A
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4945
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

12-122773103-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773103
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773103
    reference: chr 12
allele count: 2
allele frequency: 1.704826363434884e-5
allele num: 117314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2320-15G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3457-15G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3562-15G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3562-15G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3229-15G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3595-15G>A
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4579
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4812
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

12-122773110-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773110
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773110
    reference: chr 12
allele count: 2
allele frequency: 1.71010329023873e-5
allele num: 116952
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3562-22G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3562-22G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3229-22G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2320-22G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3457-22G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3595-22G>C
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22778
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5588
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34798
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4689
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4171
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-122773114-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773114
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773114
    reference: chr 12
allele count: 2
allele frequency: 1.71485406591899e-5
allele num: 116628
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3229-26T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3595-26T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3562-26T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3562-26T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3457-26T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2320-26T>G
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20367
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15283
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4171
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4483
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-122773134-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773134
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773134
    reference: chr 12
allele count: 1
allele frequency: 8.771468168342018e-6
allele num: 114006
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3457-46T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3562-46T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2320-46T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3562-46T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3595-46T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3229-46T>G
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14297
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6916
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3774
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4168
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6966
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4850
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7015
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/12-122773136-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773136
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773136
    reference: chr 12
allele count: 1
allele frequency: 8.810417437578192e-6
allele num: 113502
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3562-48T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3457-48T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3562-48T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2320-48T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3595-48T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3229-48T>G
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3475
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6647
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3781
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2656
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5607
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7152
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6951
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

12-122773139-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773139
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773139
    reference: chr 12
allele count: 1
allele frequency: 8.958967926894822e-6
allele num: 111620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3562-51G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3562-51G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3229-51G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3457-51G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2320-51G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3595-51G>A
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15316
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6966
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6373
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3585
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3709
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

12-122773140-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122773140
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122773140
    reference: chr 12
allele count: 1
allele frequency: 8.923313047668338e-6
allele num: 112066
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3562-52T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3229-52T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2320-52T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3457-52T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3562-52T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3595-52T>C
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4165
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3722
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5709
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6313
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7240
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-122794283-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794283
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794283
    reference: chr 12
allele count: 3059
allele frequency: 2.533165504562845e-2
allele num: 120758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3561+26C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2319+26C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3456+26C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3594+26C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3228+26C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3561+26C>T
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.75e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 4994
  bin: 4.25e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 7111
  bin: 2.25e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 4.75e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.75e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 5.75e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 5.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7980
  bin: 3.75e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 12637
  bin: 3.25e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 16766
  bin: 2.75e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 372
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5088
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18653
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 7721
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4272
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14559
  bin: 9.75e1
  variant carriers: 2918
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 108
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/12-122794287-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794287
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794287
    reference: chr 12
allele count: 1
allele frequency: 8.278145695364238e-6
allele num: 120800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3561+22G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3228+22G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2319+22G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3561+22G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3594+22G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3456+22G>T
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5027
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4471
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8165
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19883
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD

12-122794288-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794288
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794288
    reference: chr 12
allele count: 5
allele frequency: 4.137976694915254e-5
allele num: 120832
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3594+21G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3561+21G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3228+21G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3561+21G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3456+21G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2319+21G>C
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5028
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3720
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19967
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

12-122794291-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794291
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794291
    reference: chr 12
allele count: 1
allele frequency: 8.270477702792114e-6
allele num: 120912
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2319+18A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3561+18A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3456+18A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3228+18A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3561+18A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3594+18A>G
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17747
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5027
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3732
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4481
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

12-122794292-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794292
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794292
    reference: chr 12
allele count: 170
allele frequency: 1.405934698468358e-3
allele num: 120916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3456+17G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3594+17G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3561+17G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2319+17G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3228+17G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3561+17G>A
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13155
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 17777
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5028
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 8173
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 20187
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3135
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5302
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 3
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

12-122794293-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794293
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794293
    reference: chr 12
allele count: 3
allele frequency: 2.48015873015873e-5
allele num: 120960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2319+16C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3456+16C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3561+16C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3594+16C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3561+16C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3228+16C>T
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5318
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8258
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20436
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

12-122794303-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794303
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794303
    reference: chr 12
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3228+6T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3456+6T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2319+6T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3594+6T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3561+6T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3561+6T>C
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8324
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3141
  bin: 9.25e1
  variant carriers: 0
hgvs: c.3594+6T>C
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

12-122794305-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794305
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794305
    reference: chr 12
allele count: 15
allele frequency: 1.237521656628991e-4
allele num: 121210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2319+4A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3228+4A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3594+4A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3561+4A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3456+4A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3561+4A>G
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13220
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5325
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4477
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21064
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: c.3594+4A>G
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

12-122794320-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794320
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794320
    reference: chr 12
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3583A>G
  hgvsp: ENSP00000439093.1:p.Ser1195Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2308A>G
  hgvsp: ENSP00000438743.1:p.Ser770Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3550A>G
  hgvsp: ENSP00000303585.7:p.Ser1184Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3217A>G
  hgvsp: ENSP00000355314.4:p.Ser1073Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3550A>G
  hgvsp: ENSP00000351665.2:p.Ser1184Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3445A>G
  hgvsp: ENSP00000445531.1:p.Ser1149Gly
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21231
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12208
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser1195Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

12-122794321-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794321
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794321
    reference: chr 12
allele count: 2
allele frequency: 1.648478454386601e-5
allele num: 121324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3549A>G
  hgvsp: ENST00000302528.7:c.3549A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2307A>G
  hgvsp: ENST00000545889.1:c.2307A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3216A>G
  hgvsp: ENST00000361654.4:c.3216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3444A>G
  hgvsp: ENST00000537178.1:c.3444A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3582A>G
  hgvsp: ENST00000540338.1:c.3582A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3549A>G
  hgvsp: ENST00000358808.2:c.3549A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3757
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8338
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4471
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5325
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr1194Thr
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

12-122794329-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794329
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794329
    reference: chr 12
allele count: 7
allele frequency: 5.767963085036256e-5
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3574G>A
  hgvsp: ENSP00000439093.1:p.Glu1192Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3541G>A
  hgvsp: ENSP00000351665.2:p.Glu1181Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3436G>A
  hgvsp: ENSP00000445531.1:p.Glu1146Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3208G>A
  hgvsp: ENSP00000355314.4:p.Glu1070Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3541G>A
  hgvsp: ENSP00000303585.7:p.Glu1181Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2299G>A
  hgvsp: ENSP00000438743.1:p.Glu767Lys
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8338
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12206
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5321
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu1192Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD

12-122794330-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794330
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794330
    reference: chr 12
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3540C>T
  hgvsp: ENST00000358808.2:c.3540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3573C>T
  hgvsp: ENST00000540338.1:c.3573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3540C>T
  hgvsp: ENST00000302528.7:c.3540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3207C>T
  hgvsp: ENST00000361654.4:c.3207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3435C>T
  hgvsp: ENST00000537178.1:c.3435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2298C>T
  hgvsp: ENST00000545889.1:c.2298C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3143
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8342
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21257
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp1191Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

12-122794336-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794336
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794336
    reference: chr 12
allele count: 11
allele frequency: 9.06259783486299e-5
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3534C>T
  hgvsp: ENST00000358808.2:c.3534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3201C>T
  hgvsp: ENST00000361654.4:c.3201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3534C>T
  hgvsp: ENST00000302528.7:c.3534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3567C>T
  hgvsp: ENST00000540338.1:c.3567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3429C>T
  hgvsp: ENST00000537178.1:c.3429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2292C>T
  hgvsp: ENST00000545889.1:c.2292C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3757
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4472
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12196
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser1189Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

12-122794361-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794361
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794361
    reference: chr 12
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3404A>C
  hgvsp: ENSP00000445531.1:p.Lys1135Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3176A>C
  hgvsp: ENSP00000355314.4:p.Lys1059Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3509A>C
  hgvsp: ENSP00000351665.2:p.Lys1170Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2267A>C
  hgvsp: ENSP00000438743.1:p.Lys756Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3542A>C
  hgvsp: ENSP00000439093.1:p.Lys1181Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3509A>C
  hgvsp: ENSP00000303585.7:p.Lys1170Thr
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4462
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8315
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12184
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21282
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys1181Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

12-122794365-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794365
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794365
    reference: chr 12
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2263G>A
  hgvsp: ENSP00000438743.1:p.Val755Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3172G>A
  hgvsp: ENSP00000355314.4:p.Val1058Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3505G>A
  hgvsp: ENSP00000351665.2:p.Val1169Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3538G>A
  hgvsp: ENSP00000439093.1:p.Val1180Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3400G>A
  hgvsp: ENSP00000445531.1:p.Val1134Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3505G>A
  hgvsp: ENSP00000303585.7:p.Val1169Ile
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val1180Ile
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

12-122794371-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794371
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794371
    reference: chr 12
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3532G>A
  hgvsp: ENSP00000439093.1:p.Glu1178Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3499G>A
  hgvsp: ENSP00000351665.2:p.Glu1167Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3166G>A
  hgvsp: ENSP00000355314.4:p.Glu1056Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3394G>A
  hgvsp: ENSP00000445531.1:p.Glu1132Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2257G>A
  hgvsp: ENSP00000438743.1:p.Glu753Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3499G>A
  hgvsp: ENSP00000303585.7:p.Glu1167Lys
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5021
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13194
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4458
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3741
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8303
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu1178Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

12-122794374-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794374
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794374
    reference: chr 12
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3496G>A
  hgvsp: ENSP00000351665.2:p.Glu1166Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3529G>A
  hgvsp: ENSP00000439093.1:p.Glu1177Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2254G>A
  hgvsp: ENSP00000438743.1:p.Glu752Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3391G>A
  hgvsp: ENSP00000445531.1:p.Glu1131Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3163G>A
  hgvsp: ENSP00000355314.4:p.Glu1055Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3496G>A
  hgvsp: ENSP00000303585.7:p.Glu1166Lys
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8296
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu1177Lys
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

12-122794375-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794375
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794375
    reference: chr 12
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3390A>G
  hgvsp: ENST00000537178.1:c.3390A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2253A>G
  hgvsp: ENST00000545889.1:c.2253A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3528A>G
  hgvsp: ENST00000540338.1:c.3528A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3495A>G
  hgvsp: ENST00000358808.2:c.3495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3162A>G
  hgvsp: ENST00000361654.4:c.3162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3495A>G
  hgvsp: ENST00000302528.7:c.3495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12175
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3745
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3135
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln1176Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

12-122794376-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794376
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794376
    reference: chr 12
allele count: 2
allele frequency: 1.647826516824309e-5
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3494A>G
  hgvsp: ENSP00000303585.7:p.Gln1165Arg
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3527A>G
  hgvsp: ENSP00000439093.1:p.Gln1176Arg
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3161A>G
  hgvsp: ENSP00000355314.4:p.Gln1054Arg
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3389A>G
  hgvsp: ENSP00000445531.1:p.Gln1130Arg
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3494A>G
  hgvsp: ENSP00000351665.2:p.Gln1165Arg
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2252A>G
  hgvsp: ENSP00000438743.1:p.Gln751Arg
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12176
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5305
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4455
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln1176Arg
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

12-122794381-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794381
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794381
    reference: chr 12
allele count: 6
allele frequency: 4.943642475776152e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3384G>A
  hgvsp: ENST00000537178.1:c.3384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3489G>A
  hgvsp: ENST00000358808.2:c.3489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3522G>A
  hgvsp: ENST00000540338.1:c.3522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3489G>A
  hgvsp: ENST00000302528.7:c.3489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2247G>A
  hgvsp: ENST00000545889.1:c.2247G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3156G>A
  hgvsp: ENST00000361654.4:c.3156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5303
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8285
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala1174Ala
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

12-122794382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122794382
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122794382
    reference: chr 12
allele count: 3
allele frequency: 2.472065658063878e-5
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.3488C>T
  hgvsp: ENSP00000303585.7:p.Ala1163Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.3488C>T
  hgvsp: ENSP00000351665.2:p.Ala1163Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.2246C>T
  hgvsp: ENSP00000438743.1:p.Ala749Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.3521C>T
  hgvsp: ENSP00000439093.1:p.Ala1174Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.3155C>T
  hgvsp: ENSP00000355314.4:p.Ala1052Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.3383C>T
  hgvsp: ENSP00000445531.1:p.Ala1128Val
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Ala1174Val
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 4469
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2741
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 942
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505570611261668e-5
allele num: 66420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16104
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.157e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.965e0

MQRankSum
type: SiteQuality
SIO_000300: 7.21e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.298e1

DP
type: SiteQuality
SIO_000300: 2.256262e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

GenotypeQuality
all individuals: 4581
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 28

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.486634340420241e-4
allele num: 16086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.614457831325301e-4
allele num: 66400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.223e0

QD
type: SiteQuality
SIO_000300: 1.33e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.89e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.782e0

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 2.260635e6

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 18

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.559624186942905e-4
allele num: 66416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16102
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.641342074816814e-5
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

FS
type: SiteQuality
SIO_000300: 1.905e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 2.259809e6

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.37e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 72

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 4.815505929091675e-4
allele num: 66452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 38
allele frequency: 5.755831566192063e-3
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.222222222222222e-3
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e-1

DP
type: SiteQuality
SIO_000300: 2.27089e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-2

QD
type: SiteQuality
SIO_000300: 1.36e1

GenotypeQuality
all individuals: 3276
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2742
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66468
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.185822095756526e-4
allele num: 16166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.897e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.288e1

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

DP
type: SiteQuality
SIO_000300: 2.266662e6

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5273
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.236858379715523e-4
allele num: 16170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.551e0

FS
type: SiteQuality
SIO_000300: 7.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

DP
type: SiteQuality
SIO_000300: 2.267969e6

MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.367e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.09e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16208
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.571e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.270796e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.73e-1

ClippingRankSum
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SIO_000300: -5.679999999999999e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.28074e6

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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FS
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 177
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15267
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GenotypeQuality
all individuals: 2741
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00228173411793e-5
allele num: 66616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.0e-4

BaseQRankSum
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FS
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QD
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VQSLOD
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MQ
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

DP
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SIO_000300: 2.285074e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 5.02e-1

VQSLOD
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DP
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
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MQRankSum
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ClippingRankSum
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SIO_000300: -5.06e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.503017021404341e-5
allele num: 66622
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.091617933723197e-5
allele num: 16416
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

QD
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.38e-1

FS
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ReadPosRankSum
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MQ
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.091617933723197e-5
allele num: 16416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.38e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

QD
type: SiteQuality
SIO_000300: 1.153e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

DP
type: SiteQuality
SIO_000300: 2.285994e6

VQSLOD
type: SiteQuality
SIO_000300: 8.5e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073858114674441e-5
allele num: 16464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

QD
type: SiteQuality
SIO_000300: 9.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

FS
type: SiteQuality
SIO_000300: 1.555e1

DP
type: SiteQuality
SIO_000300: 2.287957e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.149e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.68e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: -2.132e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00048007681229e-5
allele num: 66656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
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MQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

DP
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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QD
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SIO_000300: 1.218e1

FS
type: SiteQuality
SIO_000300: 1.201e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 14
allele frequency: 1.34848776728954e-3
allele num: 10382
num of homozygotes: 0

Latino
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allele count: 34
allele frequency: 2.939142461964039e-3
allele num: 11568
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
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allele count: 504
allele frequency: 7.579631244924354e-3
allele num: 66494
num of homozygotes: 1

South Asian
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allele count: 30
allele frequency: 1.857125170236474e-3
allele num: 16154
num of homozygotes: 0

Other
type: Population
allele count: 9
allele frequency: 1.002227171492205e-2
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.336273e6

BaseQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.714250340472948e-4
allele num: 16154
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Other
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allele frequency: 0.0e0
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East Asian
type: Population
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allele num: 8630
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66494
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 5.72e-1

ReadPosRankSum
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MQRankSum
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DP
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MQ
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SIO_000300: 5.973e1

VQSLOD
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SIO_000300: 4.62e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504257047444267e-5
allele num: 66478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.329e1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.091e0

DP
type: SiteQuality
SIO_000300: 2.290265e6

FS
type: SiteQuality
SIO_000300: 5.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.498e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3255
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.522294913925654e-5
allele num: 66338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.281446e6

MQRankSum
type: SiteQuality
SIO_000300: 7.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 3.836e0

QD
type: SiteQuality
SIO_000300: 1.295e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732201628269531e-4
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

FS
type: SiteQuality
SIO_000300: 4.853e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

QD
type: SiteQuality
SIO_000300: 1.234e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.46e0

VQSLOD
type: SiteQuality
SIO_000300: 7.68e-1

DP
type: SiteQuality
SIO_000300: 2.266948e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514646632940535e-5
allele num: 66022
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.72e0

MQ
type: SiteQuality
SIO_000300: 5.739e1

VQSLOD
type: SiteQuality
SIO_000300: -2.904e-1

QD
type: SiteQuality
SIO_000300: 3.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

DP
type: SiteQuality
SIO_000300: 2.257068e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.21e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 5114
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.133786848072562e-3
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15064
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.72e0

DP
type: SiteQuality
SIO_000300: 2.257068e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.904e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.739e1

QD
type: SiteQuality
SIO_000300: 3.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.21e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3850
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.591e1

FS
type: SiteQuality
SIO_000300: 5.427e0

DP
type: SiteQuality
SIO_000300: 2.250474e6

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4972
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522626225714112e-5
allele num: 65676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.734304543877905e-4
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.74e-1

DP
type: SiteQuality
SIO_000300: 2.227306e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.405e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.796238244514106e-5
allele num: 10208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.190613320262239e-5
allele num: 65284
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.841121495327102e-4
allele num: 8560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13476
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MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

FS
type: SiteQuality
SIO_000300: 9.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.94e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

QD
type: SiteQuality
SIO_000300: 1.246e1

DP
type: SiteQuality
SIO_000300: 2.212529e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20902
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532238293699436e-5
allele num: 65264
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13468
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

QD
type: SiteQuality
SIO_000300: 1.152e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

DP
type: SiteQuality
SIO_000300: 2.211694e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3207
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GenotypeQuality
all individuals: 4427
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.409602845287492e-5
allele num: 13496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65276
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.953e0

FS
type: SiteQuality
SIO_000300: 9.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.362e1

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

DP
type: SiteQuality
SIO_000300: 2.21118e6

GenotypeQuality
all individuals: 780
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2724
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4893
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20907
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3207
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.659783074943318e-5
allele num: 65276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13496
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.362e1

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

FS
type: SiteQuality
SIO_000300: 9.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.953e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.09e-1

DP
type: SiteQuality
SIO_000300: 2.21118e6

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

GenotypeQuality
all individuals: 764
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2727
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8872
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20906
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53477807109092e-5
allele num: 65156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.208878e6

MQ
type: SiteQuality
SIO_000300: 5.922e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e-1

QD
type: SiteQuality
SIO_000300: 1.939e1

VQSLOD
type: SiteQuality
SIO_000300: -1.582e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.132e0

GenotypeQuality
all individuals: 3203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4875
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variant carriers: 0

GenotypeQuality
all individuals: 1071
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variant carriers: 0

GenotypeQuality
all individuals: 4517
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variant carriers: 0

GenotypeQuality
all individuals: 8762
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535343609899896e-5
allele num: 65132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-2

QD
type: SiteQuality
SIO_000300: 1.983e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.399999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.271e0

VQSLOD
type: SiteQuality
SIO_000300: 5.39e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

DP
type: SiteQuality
SIO_000300: 2.20848e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-2

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20906
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 266
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 395
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variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3201
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variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8705
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535720867375146e-5
allele num: 65116
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.328e-1

FS
type: SiteQuality
SIO_000300: 1.186e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.94e-1

QD
type: SiteQuality
SIO_000300: 1.354e1

DP
type: SiteQuality
SIO_000300: 2.208394e6

MQ
type: SiteQuality
SIO_000300: 5.946e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
all individuals: 22780
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 506
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variant carriers: 0

GenotypeQuality
all individuals: 908
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variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.601845325815339e-5
allele num: 62428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15316
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.085953116481919e-5
allele num: 11006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.506e0

DP
type: SiteQuality
SIO_000300: 1.503493e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.174e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
all individuals: 4178
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2396
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 377
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variant carriers: 0

GenotypeQuality
all individuals: 2066
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variant carriers: 3

GenotypeQuality
all individuals: 335
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variant carriers: 0

GenotypeQuality
all individuals: 4377
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.130752373995617e-5
allele num: 10952
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.954653308726602e-4
allele num: 15172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.425909266161162e-5
allele num: 62248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.691e0

DP
type: SiteQuality
SIO_000300: 1.542666e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.47e-1

QD
type: SiteQuality
SIO_000300: 4.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.4099e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.296e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

GenotypeQuality
all individuals: 4959
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
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variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 819
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variant carriers: 0

GenotypeQuality
all individuals: 502
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variant carriers: 0

GenotypeQuality
all individuals: 334
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variant carriers: 0

GenotypeQuality
all individuals: 4182
bin: 9.75e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63630
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.967216371945162e-4
allele num: 10066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.647e0

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

DP
type: SiteQuality
SIO_000300: 1.595379e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.89e-1

QD
type: SiteQuality
SIO_000300: 1.355e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.29e-1

FS
type: SiteQuality
SIO_000300: 1.7801e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5193
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 2318
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variant carriers: 0

GenotypeQuality
all individuals: 470
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GenotypeQuality
all individuals: 1533
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variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.809020436927414e-5
allele num: 11352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64228
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.808e0

VQSLOD
type: SiteQuality
SIO_000300: -2.128e0

MQRankSum
type: SiteQuality
SIO_000300: -2.421e0

QD
type: SiteQuality
SIO_000300: 9.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.223e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.643602e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 640
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GenotypeQuality
all individuals: 341
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GenotypeQuality
all individuals: 56
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GenotypeQuality
all individuals: 840
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GenotypeQuality
all individuals: 1521
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GenotypeQuality
all individuals: 1412
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GenotypeQuality
all individuals: 398
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GenotypeQuality
all individuals: 4176
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40540
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64632
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.172077521293668e-5
allele num: 16202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.033e1

QD
type: SiteQuality
SIO_000300: 7.17e0

FS
type: SiteQuality
SIO_000300: 7.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

DP
type: SiteQuality
SIO_000300: 1.674659e6

GenotypeQuality
all individuals: 640
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 501
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GenotypeQuality
all individuals: 1412
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variant carriers: 0

GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 320
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GenotypeQuality
all individuals: 881
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GenotypeQuality
all individuals: 525
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GenotypeQuality
all individuals: 4176
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GenotypeQuality
all individuals: 1521
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.856100926473487e-5
allele num: 10146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

QD
type: SiteQuality
SIO_000300: 7.17e0

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 1.674659e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.94e-1

MQ
type: SiteQuality
SIO_000300: 6.033e1

FS
type: SiteQuality
SIO_000300: 7.05e-1

GenotypeQuality
all individuals: 5404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
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GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42078
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539693293096015e-5
allele num: 64948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.679703e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.185e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: -1.311e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.323e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.262e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 7.72e0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 291
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variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.114711997064938e-5
allele num: 16354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.468e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.59e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

FS
type: SiteQuality
SIO_000300: 6.306e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.693973e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

QD
type: SiteQuality
SIO_000300: 7.52e0

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 194
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variant carriers: 0

GenotypeQuality
all individuals: 1383
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variant carriers: 0

GenotypeQuality
all individuals: 269
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variant carriers: 0

GenotypeQuality
all individuals: 1551
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 5463
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GenotypeQuality
all individuals: 4175
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65346
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.79431929480901e-5
allele num: 10210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

DP
type: SiteQuality
SIO_000300: 1.694942e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.68e0

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

GenotypeQuality
all individuals: 302
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
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variant carriers: 0

GenotypeQuality
all individuals: 4179
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5493
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variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.119389284949362e-5
allele num: 65366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.71e-1

DP
type: SiteQuality
SIO_000300: 1.697399e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.289e0

QD
type: SiteQuality
SIO_000300: 1.136e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.49e-1

FS
type: SiteQuality
SIO_000300: 3.232e0

MQ
type: SiteQuality
SIO_000300: 5.876e1

GenotypeQuality
all individuals: 884
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
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variant carriers: 0

GenotypeQuality
all individuals: 1446
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variant carriers: 0

GenotypeQuality
all individuals: 501
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variant carriers: 0

GenotypeQuality
all individuals: 42878
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variant carriers: 0

GenotypeQuality
all individuals: 1766
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variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.065885887727259e-5
allele num: 65234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.366e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.693388e6

MQ
type: SiteQuality
SIO_000300: 5.859e1

FS
type: SiteQuality
SIO_000300: 1.969e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

QD
type: SiteQuality
SIO_000300: 9.550000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

GenotypeQuality
all individuals: 185
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4179
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 282
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
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GenotypeQuality
all individuals: 494
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variant carriers: 0

GenotypeQuality
all individuals: 1377
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variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16212
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.776549060909251e-5
allele num: 11394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.24031007751938e-4
allele num: 64500
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.017e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

DP
type: SiteQuality
SIO_000300: 1.673079e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

QD
type: SiteQuality
SIO_000300: 1.092e1

MQ
type: SiteQuality
SIO_000300: 5.915e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.479e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 285
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55550024888004e-5
allele num: 64288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.69e-1

FS
type: SiteQuality
SIO_000300: 1.562e0

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-1

DP
type: SiteQuality
SIO_000300: 1.652333e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.176e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4171
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1426
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556565593674117e-5
allele num: 64244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.457e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

DP
type: SiteQuality
SIO_000300: 1.652748e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.789999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.845e0

MQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4172
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 831
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.121780663690569e-5
allele num: 64066
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16110
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 1.3647e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.154e0

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.57e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.276e0

QD
type: SiteQuality
SIO_000300: 6.68e0

MQ
type: SiteQuality
SIO_000300: 5.848e1

DP
type: SiteQuality
SIO_000300: 1.636449e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 132
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.131654766378555e-5
allele num: 63864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.174e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

VQSLOD
type: SiteQuality
SIO_000300: 6.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.396e1

DP
type: SiteQuality
SIO_000300: 1.604593e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

MQ
type: SiteQuality
SIO_000300: 5.915e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
all individuals: 577
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31631
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2270
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.246105919003115e-4
allele num: 16050
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.112e1

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

FS
type: SiteQuality
SIO_000300: 5.019e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.016e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.574808e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

GenotypeQuality
all individuals: 324
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3286
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3053
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12725
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.609114021819586e-5
allele num: 62146
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.579e0

DP
type: SiteQuality
SIO_000300: 1.432516e6

FS
type: SiteQuality
SIO_000300: 2.706e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

QD
type: SiteQuality
SIO_000300: 1.927e1

GenotypeQuality
all individuals: 946
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4165
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3008
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.616762594580612e-5
allele num: 61852
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.19e-1

DP
type: SiteQuality
SIO_000300: 1.428541e6

VQSLOD
type: SiteQuality
SIO_000300: -2.071e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

FS
type: SiteQuality
SIO_000300: 8.491e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.457e0

QD
type: SiteQuality
SIO_000300: 2.643e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
all individuals: 5614
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5837
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5182
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4163
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2573
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.646361540994402e-5
allele num: 60740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15368
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.229e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.715e0

VQSLOD
type: SiteQuality
SIO_000300: 3.77e-1

FS
type: SiteQuality
SIO_000300: 3.245e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.327e0

DP
type: SiteQuality
SIO_000300: 1.427624e6

GenotypeQuality
all individuals: 6337
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7005
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1835
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5101
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1896
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60948
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.460783046905285e-5
allele num: 15478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQRankSum
type: SiteQuality
SIO_000300: -4.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 3.167e0

DP
type: SiteQuality
SIO_000300: 1.427945e6

VQSLOD
type: SiteQuality
SIO_000300: 7.44e-1

QD
type: SiteQuality
SIO_000300: 1.475e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1994
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3555
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3012
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 147
bin: 4.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 651
allele frequency: 9.784765225756028e-3
allele num: 66532
num of homozygotes: 4

Latino
type: Population
allele count: 84
allele frequency: 7.258900795022468e-3
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 206
allele frequency: 2.38150289017341e-2
allele num: 8650
num of homozygotes: 2

South Asian
type: Population
allele count: 922
allele frequency: 5.728131212723658e-2
allele num: 16096
num of homozygotes: 39

African
type: Population
allele count: 1141
allele frequency: 1.097326408924793e-1
allele num: 10398
num of homozygotes: 63

European (Finnish)
type: Population
allele count: 34
allele frequency: 5.143721633888048e-3
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 21
allele frequency: 2.333333333333333e-2
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.141573e6

FS
type: SiteQuality
SIO_000300: 1.174e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.67e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.69e-1

QD
type: SiteQuality
SIO_000300: 1.234e1

VQSLOD
type: SiteQuality
SIO_000300: 4.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.422e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

GenotypeQuality
all individuals: 110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12275
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3149
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3720
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5300
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502855425308085e-5
allele num: 66540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 2.049331e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.028e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.059e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.313e0

QD
type: SiteQuality
SIO_000300: 8.17e0

GenotypeQuality
all individuals: 5311
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8172
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4472
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12277
bin: 9.75e1
variant carriers: 5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.779010633379565e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.45e-1

DP
type: SiteQuality
SIO_000300: 2.050535e6

FS
type: SiteQuality
SIO_000300: 5.152e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.505e0

QD
type: SiteQuality
SIO_000300: 9.68e0

GenotypeQuality
all individuals: 2078
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12276
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8216
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 2.052724e6

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

MQ
type: SiteQuality
SIO_000300: 5.928e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

QD
type: SiteQuality
SIO_000300: 1.121e1

GenotypeQuality
all individuals: 3722
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2073
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12323
bin: 9.75e1
variant carriers: 167

GenotypeQuality
all individuals: 4468
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.184033177812338e-4
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50253929140247e-5
allele num: 66554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16228
num of homozygotes: 0

African
type: Population
allele count: 162
allele frequency: 1.55799192152337e-2
allele num: 10398
num of homozygotes: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.26e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-2

DP
type: SiteQuality
SIO_000300: 2.057278e6

QD
type: SiteQuality
SIO_000300: 1.196e1

FS
type: SiteQuality
SIO_000300: 1.126e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3732
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12212
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.506534474988734e-5
allele num: 66570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 2.050299e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 5.09e-1

QD
type: SiteQuality
SIO_000300: 1.061e1

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
all individuals: 5327
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.003e0

FS
type: SiteQuality
SIO_000300: 5.584e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-1

QD
type: SiteQuality
SIO_000300: 1.22e1

DP
type: SiteQuality
SIO_000300: 2.057163e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 1.73370319001387e-3
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

FS
type: SiteQuality
SIO_000300: 5.19e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.261e0

DP
type: SiteQuality
SIO_000300: 2.057934e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

QD
type: SiteQuality
SIO_000300: 1.159e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.154e0

QD
type: SiteQuality
SIO_000300: 1.207e1

FS
type: SiteQuality
SIO_000300: 8.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.059445e6

GenotypeQuality
all individuals: 21229
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.059516e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.446e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e0

VQSLOD
type: SiteQuality
SIO_000300: -7.008e-1

FS
type: SiteQuality
SIO_000300: 1.525e0

MQRankSum
type: SiteQuality
SIO_000300: 8.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

MQ
type: SiteQuality
SIO_000300: 5.888e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.777675063554426e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.35e-1

FS
type: SiteQuality
SIO_000300: 5.36e-1

DP
type: SiteQuality
SIO_000300: 2.059958e6

MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 8.140000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.333e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.314e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 11
allele frequency: 1.648631635742334e-4
allele num: 66722
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.37e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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East Asian
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allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
type: Population
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allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

African
type: Population
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allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.24e0

QD
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BaseQRankSum
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SIO_000300: 7.37e-1

InbreedingCoeff
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.927e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 45
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.966e0

DP
type: SiteQuality
SIO_000300: 2.057672e6

QD
type: SiteQuality
SIO_000300: 1.206e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.31e-1

FS
type: SiteQuality
SIO_000300: 7.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.45e-1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5305
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3746
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12176
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2068
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.013e0

MQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.901e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.77e-1

DP
type: SiteQuality
SIO_000300: 2.05745e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.683e0

VQSLOD
type: SiteQuality
SIO_000300: -3.755e-1

QD
type: SiteQuality
SIO_000300: 1.678e1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21305
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5306
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8295
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2068
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 6.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 2.057383e6

MQRankSum
type: SiteQuality
SIO_000300: -1.157e0

VQSLOD
type: SiteQuality
SIO_000300: -3.559e0

QD
type: SiteQuality
SIO_000300: 5.7e-1

GenotypeQuality
all individuals: 8293
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21325
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: 8.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

DP
type: SiteQuality
SIO_000300: 2.057324e6

QD
type: SiteQuality
SIO_000300: 1.433e1

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3738
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4453
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12170
bin: 9.75e1
variant carriers: 6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.494454103963068e-5
allele num: 66716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.74e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

FS
type: SiteQuality
SIO_000300: 5.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 1.508e1

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

MQRankSum
type: SiteQuality
SIO_000300: -5.01e-1

DP
type: SiteQuality
SIO_000300: 2.056896e6