14-39790229-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790229
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790229
    reference: chr 14
allele count: 1
allele frequency: 8.25300409349003e-6
allele num: 121168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1641C>G
  hgvsp: ENST00000280083.3:c.1641C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1641C>G
  hgvsp: ENST00000341502.5:c.1641C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3246C>G
  hgvsp: ENST00000553728.1:c.3246C>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1416C>G
  hgvsp: ENST00000556148.1:c.1416C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1554C>G
  hgvsp: ENST00000603904.1:c.1554C>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1554C>G
  hgvsp: ENST00000553352.1:c.1554C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1656C>G
  hgvsp: ENST00000396158.2:c.1656C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1401C>G
  hgvsp: ENST00000557038.1:c.1401C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1554C>G
  hgvsp: ENST00000396165.4:c.1554C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1605C>G
  hgvsp: ENST00000341749.3:c.1605C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1734C>G
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu552Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/14-39790232-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790232
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790232
    reference: chr 14
allele count: 1
allele frequency: 8.253957772752034e-6
allele num: 121154
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1557A>C
  hgvsp: ENST00000603904.1:c.1557A>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1404A>C
  hgvsp: ENST00000557038.1:c.1404A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1659A>C
  hgvsp: ENST00000396158.2:c.1659A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1557A>C
  hgvsp: ENST00000553352.1:c.1557A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1644A>C
  hgvsp: ENST00000280083.3:c.1644A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1644A>C
  hgvsp: ENST00000341502.5:c.1644A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3249A>C
  hgvsp: ENST00000553728.1:c.3249A>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1737A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1419A>C
  hgvsp: ENST00000556148.1:c.1419A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1557A>C
  hgvsp: ENST00000396165.4:c.1557A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1608A>C
  hgvsp: ENST00000341749.3:c.1608A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser553Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

14-39790234-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790234
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790234
    reference: chr 14
allele count: 1
allele frequency: 8.255047961828658e-6
allele num: 121138
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1646C>G
  hgvsp: ENSP00000280083.3:p.Pro549Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1646C>G
  hgvsp: ENSP00000339286.5:p.Pro549Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1661C>G
  hgvsp: ENSP00000379462.2:p.Pro554Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1559C>G
  hgvsp: ENSP00000379468.4:p.Pro520Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1559C>G
  hgvsp: ENSP00000450449.1:p.Pro520Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1406C>G
  hgvsp: ENSP00000450869.1:p.Pro469Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1610C>G
  hgvsp: ENSP00000343897.3:p.Pro537Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3251C>G
  hgvsp: ENSP00000452252.1:p.Pro1084Arg
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1421C>G
  hgvsp: ENSP00000452562.1:p.Pro474Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1559C>G
  hgvsp: ENSP00000473943.1:p.Pro520Arg
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1739C>G
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro554Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/14-39790239-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790239
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790239
    reference: chr 14
allele count: 2
allele frequency: 1.651827747402501e-5
allele num: 121078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1411C>A
  hgvsp: ENSP00000450869.1:p.Leu471Ile
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1651C>A
  hgvsp: ENSP00000280083.3:p.Leu551Ile
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1744C>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1615C>A
  hgvsp: ENSP00000343897.3:p.Leu539Ile
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1564C>A
  hgvsp: ENSP00000379468.4:p.Leu522Ile
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3256C>A
  hgvsp: ENSP00000452252.1:p.Leu1086Ile
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1564C>A
  hgvsp: ENSP00000450449.1:p.Leu522Ile
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1666C>A
  hgvsp: ENSP00000379462.2:p.Leu556Ile
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1426C>A
  hgvsp: ENSP00000452562.1:p.Leu476Ile
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1564C>A
  hgvsp: ENSP00000473943.1:p.Leu522Ile
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1651C>A
  hgvsp: ENSP00000339286.5:p.Leu551Ile
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu556Ile
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

14-39790246-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790246
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790246
    reference: chr 14
allele count: 1
allele frequency: 8.269246671628215e-6
allele num: 120930
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1658G>C
  hgvsp: ENSP00000339286.5:p.Gly553Ala
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1571G>C
  hgvsp: ENSP00000450449.1:p.Gly524Ala
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1622G>C
  hgvsp: ENSP00000343897.3:p.Gly541Ala
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1658G>C
  hgvsp: ENSP00000280083.3:p.Gly553Ala
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1673G>C
  hgvsp: ENSP00000379462.2:p.Gly558Ala
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1418G>C
  hgvsp: ENSP00000450869.1:p.Gly473Ala
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1433G>C
  hgvsp: ENSP00000452562.1:p.Gly478Ala
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1571G>C
  hgvsp: ENSP00000473943.1:p.Gly524Ala
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3263G>C
  hgvsp: ENSP00000452252.1:p.Gly1088Ala
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1751G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1571G>C
  hgvsp: ENSP00000379468.4:p.Gly524Ala
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly558Ala
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

14-39790247-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790247
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790247
    reference: chr 14
allele count: 6
allele frequency: 4.963025460320612e-5
allele num: 120894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3264G>T
  hgvsp: ENST00000553728.1:c.3264G>T(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1572G>T
  hgvsp: ENST00000603904.1:c.1572G>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1419G>T
  hgvsp: ENST00000557038.1:c.1419G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1572G>T
  hgvsp: ENST00000396165.4:c.1572G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1434G>T
  hgvsp: ENST00000556148.1:c.1434G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1572G>T
  hgvsp: ENST00000553352.1:c.1572G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1674G>T
  hgvsp: ENST00000396158.2:c.1674G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1623G>T
  hgvsp: ENST00000341749.3:c.1623G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1752G>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1659G>T
  hgvsp: ENST00000341502.5:c.1659G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1659G>T
  hgvsp: ENST00000280083.3:c.1659G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly558Gly
num of homozygotes: 1
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

14-39790248-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790248
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790248
    reference: chr 14
allele count: 1
allele frequency: 8.278968109414843e-6
allele num: 120788
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1660G>C
  hgvsp: ENSP00000280083.3:p.Gly554Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1660G>C
  hgvsp: ENSP00000339286.5:p.Gly554Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1573G>C
  hgvsp: ENSP00000379468.4:p.Gly525Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1675G>C
  hgvsp: ENSP00000379462.2:p.Gly559Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1573G>C
  hgvsp: ENSP00000450449.1:p.Gly525Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1435G>C
  hgvsp: ENSP00000452562.1:p.Gly479Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1624G>C
  hgvsp: ENSP00000343897.3:p.Gly542Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1420G>C
  hgvsp: ENSP00000450869.1:p.Gly474Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1753G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1573G>C
  hgvsp: ENSP00000473943.1:p.Gly525Arg
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3265G>C
  hgvsp: ENSP00000452252.1:p.Gly1089Arg
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly559Arg
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

14-39790250-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790250
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790250
    reference: chr 14
allele count: 1
allele frequency: 8.289124668435012e-6
allele num: 120640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3267A>G
  hgvsp: ENST00000553728.1:c.3267A>G(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1677A>G
  hgvsp: ENST00000396158.2:c.1677A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1755A>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1575A>G
  hgvsp: ENST00000553352.1:c.1575A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1575A>G
  hgvsp: ENST00000603904.1:c.1575A>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1662A>G
  hgvsp: ENST00000341502.5:c.1662A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1422A>G
  hgvsp: ENST00000557038.1:c.1422A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1662A>G
  hgvsp: ENST00000280083.3:c.1662A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1437A>G
  hgvsp: ENST00000556148.1:c.1437A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1626A>G
  hgvsp: ENST00000341749.3:c.1626A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1575A>G
  hgvsp: ENST00000396165.4:c.1575A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly559Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

14-39790254-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790254
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790254
    reference: chr 14
allele count: 1
allele frequency: 8.298617450332775e-6
allele num: 120502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1666G>A
  hgvsp: ENSP00000339286.5:p.Gly556Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1666G>A
  hgvsp: ENSP00000280083.3:p.Gly556Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1579G>A
  hgvsp: ENSP00000450449.1:p.Gly527Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1441G>A
  hgvsp: ENSP00000452562.1:p.Gly481Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1426G>A
  hgvsp: ENSP00000450869.1:p.Gly476Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1759G>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3271G>A
  hgvsp: ENSP00000452252.1:p.Gly1091Arg
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1579G>A
  hgvsp: ENSP00000379468.4:p.Gly527Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1681G>A
  hgvsp: ENSP00000379462.2:p.Gly561Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1579G>A
  hgvsp: ENSP00000473943.1:p.Gly527Arg
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1630G>A
  hgvsp: ENSP00000343897.3:p.Gly544Arg
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly561Arg
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

14-39790279-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790279
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790279
    reference: chr 14
allele count: 5
allele frequency: 4.322118875557553e-5
allele num: 115684
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1585+19T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1447+19T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1636+19T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1672+19T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1432+19T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1585+19T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1687+19T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1585+19T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1672+19T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3277+19T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1784T>G
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9380
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22788
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32830
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

14-39790286-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790286
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790286
    reference: chr 14
allele count: 4
allele frequency: 3.502933706979596e-5
allele num: 114190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1585+26C>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1447+26C>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1672+26C>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1687+26C>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1585+26C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1636+26C>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1791C>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3277+26C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1432+26C>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1672+26C>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1585+26C>G
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6485
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

14-39790288-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790288
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790288
    reference: chr 14
allele count: 1
allele frequency: 8.764702788928428e-6
allele num: 114094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1447+28C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1636+28C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1432+28C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1672+28C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1585+28C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1585+28C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1585+28C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1672+28C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1687+28C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1793C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3277+28C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2615
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD

14-39790293-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790293
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790293
    reference: chr 14
allele count: 1
allele frequency: 8.841263947093876e-6
allele num: 113106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1672+33T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1585+33T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1798T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1585+33T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1687+33T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3277+33T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1585+33T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1636+33T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1672+33T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1432+33T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1447+33T>C
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14805
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

14-39790299-CCTTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790299
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790295
    reference: chr 14
allele count: 1
allele frequency: 8.98375736668104e-6
allele num: 111312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1432+43_1432+46delACTT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1672+43_1672+46delACTT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1585+43_1585+46delACTT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1447+43_1447+46delACTT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1687+43_1687+46delACTT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1672+43_1672+46delACTT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1636+43_1636+46delACTT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3277+43_3277+46delACTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1808_1543+1811delACTT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1585+43_1585+46delACTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1585+43_1585+46delACTT
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10010
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3171
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: CCTTA
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/14-39790303-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790303
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790303
    reference: chr 14
allele count: 2
allele frequency: 1.81801654395055e-5
allele num: 110010
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1808A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1672+43A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3277+43A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1672+43A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1687+43A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1447+43A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1585+43A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1585+43A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1432+43A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1636+43A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1585+43A>C
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7865
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14427
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7901
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9730
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

14-39790304-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790304
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790304
    reference: chr 14
allele count: 1
allele frequency: 9.137092942509411e-6
allele num: 109444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1672+44C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1585+44C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1672+44C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3277+44C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1585+44C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1432+44C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1636+44C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1809C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1447+44C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1585+44C>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1687+44C>T
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9756
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/14-39790308-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39790308
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39790308
    reference: chr 14
allele count: 2
allele frequency: 1.847063169560399e-5
allele num: 108280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1585+48A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1687+48A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3277+48A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1447+48A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1585+48A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1585+48A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1672+48A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1636+48A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1672+48A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1432+48A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1543+1813A>C
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11469
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5979
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3171
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8010
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

14-39796017-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796017
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796017
    reference: chr 14
allele count: 1
allele frequency: 8.390810384466932e-6
allele num: 119178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-51T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-51T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-51T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-51T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-51T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-51T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-51T>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-51T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-51T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-51T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-51T>G
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10671
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7946
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

14-39796025-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796025
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796025
    reference: chr 14
allele count: 2
allele frequency: 1.681407001378754e-5
allele num: 118948
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-43T>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-43T>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-43T>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-43T>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-43T>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-43T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-43T>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-43T>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-43T>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-43T>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-43T>A
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

14-39796025-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796025
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796025
    reference: chr 14
allele count: 11
allele frequency: 9.247738507583145e-5
allele num: 118948
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-43T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-43T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-43T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-43T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-43T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-43T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-43T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-43T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-43T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-43T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-43T>C
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8812
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11881
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13934
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum

14-39796036-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796036
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796036
    reference: chr 14
allele count: 5
allele frequency: 4.433410179109771e-5
allele num: 112780
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-32A>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-32A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-32A>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-32A>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-32A>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-32A>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-32A>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-32A>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-32A>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-32A>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-32A>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7518
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7621
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/14-39796038-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796038
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796038
    reference: chr 14
allele count: 1
allele frequency: 9.294544102611768e-6
allele num: 107590
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-30A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-30A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-30A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-30A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-30A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-30A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-30A>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-30A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-30A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-30A>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-30A>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

14-39796039-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796039
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796039
    reference: chr 14
allele count: 1
allele frequency: 9.643015563827121e-6
allele num: 103702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-29G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-29G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-29G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-29G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-29G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-29G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-29G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-29G>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-29G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-29G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-29G>C
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7653
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6898
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

14-39796041-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796041
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796041
    reference: chr 14
allele count: 1
allele frequency: 1.258653241032096e-5
allele num: 79450
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-27T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-27T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-27T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-27T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-27T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-27T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-27T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-27T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-27T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-27T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-27T>C
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

14-39796044-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796044
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796044
    reference: chr 14
allele count: 4
allele frequency: 5.718370264474624e-5
allele num: 69950
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-24G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-24G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-24G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-24G>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-24G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-24G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-24G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-24G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-24G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-24G>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-24G>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7359
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3042
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

14-39796045-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796045
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796045
    reference: chr 14
allele count: 1
allele frequency: 3.928038337654175e-5
allele num: 25458
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-23T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-23T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-23T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-23T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-23T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-23T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-23T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-23T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-23T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-23T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-23T>C
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

14-39796046-ATG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796046
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796044
    reference: chr 14
allele count: 1
allele frequency: 4.3535045711798e-5
allele num: 22970
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-20_1688-19delGT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-20_1544-19delGT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-20_1448-19delGT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-20_1586-19delGT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-20_1586-19delGT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-20_1673-19delGT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-20_1637-19delGT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-20_3278-19delGT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-20_1586-19delGT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-20_1433-19delGT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-20_1673-19delGT
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: ATG
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

14-39796047-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796047
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796046
    reference: chr 14
allele count: 9
allele frequency: 4.691898654989052e-4
allele num: 19182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-20delG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-20delG
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-20delG
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-20delG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-20delG
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-20delG
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-20delG
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-20delG
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-20delG
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-20delG
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-20delG
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: TG
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD

14-39796048-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796048
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796049
    reference: chr 14
allele count: 10
allele frequency: 8.271298593879239e-5
allele num: 120900
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-11dupT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-11dupT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-11dupT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-11dupT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-11dupT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-11dupT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-11dupT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-11dupT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-11dupT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-11dupT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-11dupT
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6631
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6310
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

14-39796048-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796048
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796047
    reference: chr 14
allele count: 110855
allele frequency: 9.16914805624483e-1
allele num: 120900
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-11delT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-11delT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-11delT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-11delT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-11delT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-11delT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-11delT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-11delT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-11delT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-11delT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-11delT
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 6.75e1
  variant carriers: 3766
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 9.75e1
  variant carriers: 5086
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 7.75e1
  variant carriers: 1635
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 445
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 5.25e1
  variant carriers: 7303
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 274
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 3.25e1
  variant carriers: 3277
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 2.25e1
  variant carriers: 886
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 3.75e1
  variant carriers: 5066
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.25e1
  variant carriers: 661
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 8.25e1
  variant carriers: 1196
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.25e1
  variant carriers: 2473
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 2.75e1
  variant carriers: 1831
genotype depth: GenotypeDepth
  all individuals: 6631
  bin: 4.25e1
  variant carriers: 6600
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 4.75e1
  variant carriers: 7406
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 8.75e1
  variant carriers: 899
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 6.25e1
  variant carriers: 4968
genotype depth: GenotypeDepth
  all individuals: 6310
  bin: 5.75e1
  variant carriers: 6292
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 7.75e1
  variant carriers: 570
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 9.25e1
  variant carriers: 1044
num of homozygotes: 50849
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: GT
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

14-39796048-GTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796048
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796046
    reference: chr 14
allele count: 19
allele frequency: 1.571546732837055e-4
allele num: 120900
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-12_1586-11delTT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-12_1544-11delTT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-12_1586-11delTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-12_1433-11delTT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-12_1673-11delTT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-12_1448-11delTT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-12_1637-11delTT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-12_1688-11delTT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-12_1673-11delTT
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-12_3278-11delTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-12_1586-11delTT
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6310
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6631
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: GTT
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

14-39796049-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796049
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796049
    reference: chr 14
allele count: 9
allele frequency: 6.987577639751553e-3
allele num: 1288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-19T>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-19T>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-19T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-19T>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-19T>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-19T>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-19T>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-19T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-19T>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-19T>A
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-19T>A
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

14-39796051-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796051
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796051
    reference: chr 14
allele count: 1
allele frequency: 8.258456659619451e-6
allele num: 121088
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-17T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-17T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-17T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-17T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-17T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-17T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-17T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-17T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-17T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-17T>C
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-17T>C
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4995
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

14-39796059-TTTAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796059
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796055
    reference: chr 14
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-5_3278-2delATTA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-5_1433-2delATTA
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-5_1637-2delATTA
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-5_1673-2delATTA
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-5_1673-2delATTA
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-5_1586-2delATTA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-5_1586-2delATTA
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-5_1688-2delATTA
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-5_1586-2delATTA
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-5_1448-2delATTA
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-5_1544-2delATTA
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1586-5_1586-2delATTA
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: TTTAA
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum

14-39796062-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796062
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796062
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 121146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-6A>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-6A>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-6A>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-6A>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-6A>T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-6A>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-6A>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-6A>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-6A>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-6A>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-6A>T
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.1586-6A>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

14-39796065-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796065
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796065
    reference: chr 14
allele count: 2
allele frequency: 1.65016501650165e-5
allele num: 121200
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-3T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-3T>G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-3T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-3T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-3T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-3T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-3T>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-3T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-3T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-3T>G
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-3T>G
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1586-3T>G
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

14-39796067-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796067
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796067
    reference: chr 14
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448-1G>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586-1G>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278-1G>T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637-1G>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544-1G>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673-1G>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586-1G>T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433-1G>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586-1G>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688-1G>T
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673-1G>T
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19926
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24807
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4979
  bin: 7.75e1
  variant carriers: 0
hgvs: c.1586-1G>T
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

14-39796068-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796068
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796068
    reference: chr 14
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1448G>T
  hgvsp: ENSP00000452562.1:p.Gly483Val
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1586G>T
  hgvsp: ENSP00000473943.1:p.Gly529Val
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1673G>T
  hgvsp: ENSP00000339286.5:p.Gly558Val
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1688G>T
  hgvsp: ENSP00000379462.2:p.Gly563Val
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3278G>T
  hgvsp: ENSP00000452252.1:p.Gly1093Val
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1673G>T
  hgvsp: ENSP00000280083.3:p.Gly558Val
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1544G>T
  hgvsp: ENSP00000343912.3:p.Gly515Val
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1586G>T
  hgvsp: ENSP00000450449.1:p.Gly529Val
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1433G>T
  hgvsp: ENSP00000450869.1:p.Gly478Val
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1586G>T
  hgvsp: ENSP00000379468.4:p.Gly529Val
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1637G>T
  hgvsp: ENSP00000343897.3:p.Gly546Val
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly529Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum

14-39796074-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796074
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796074
    reference: chr 14
allele count: 7
allele frequency: 5.769008884273682e-5
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1679G>A
  hgvsp: ENSP00000280083.3:p.Arg560Gln
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1679G>A
  hgvsp: ENSP00000339286.5:p.Arg560Gln
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1643G>A
  hgvsp: ENSP00000343897.3:p.Arg548Gln
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1694G>A
  hgvsp: ENSP00000379462.2:p.Arg565Gln
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1439G>A
  hgvsp: ENSP00000450869.1:p.Arg480Gln
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1592G>A
  hgvsp: ENSP00000379468.4:p.Arg531Gln
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1592G>A
  hgvsp: ENSP00000450449.1:p.Arg531Gln
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1454G>A
  hgvsp: ENSP00000452562.1:p.Arg485Gln
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3284G>A
  hgvsp: ENSP00000452252.1:p.Arg1095Gln
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1592G>A
  hgvsp: ENSP00000473943.1:p.Arg531Gln
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1550G>A
  hgvsp: ENSP00000343912.3:p.Arg517Gln
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg531Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

14-39796081-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796081
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796081
    reference: chr 14
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1599A>G
  hgvsp: ENST00000396165.4:c.1599A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1650A>G
  hgvsp: ENST00000341749.3:c.1650A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3291A>G
  hgvsp: ENST00000553728.1:c.3291A>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1557A>G
  hgvsp: ENST00000348007.3:c.1557A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1686A>G
  hgvsp: ENST00000341502.5:c.1686A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1686A>G
  hgvsp: ENST00000280083.3:c.1686A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1599A>G
  hgvsp: ENST00000553352.1:c.1599A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1599A>G
  hgvsp: ENST00000603904.1:c.1599A>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1446A>G
  hgvsp: ENST00000557038.1:c.1446A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1461A>G
  hgvsp: ENST00000556148.1:c.1461A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1701A>G
  hgvsp: ENST00000396158.2:c.1701A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro533Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

14-39796092-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796092
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796092
    reference: chr 14
allele count: 7
allele frequency: 5.766632616074076e-5
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1697T>C
  hgvsp: ENSP00000339286.5:p.Leu566Pro
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1457T>C
  hgvsp: ENSP00000450869.1:p.Leu486Pro
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3302T>C
  hgvsp: ENSP00000452252.1:p.Leu1101Pro
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1697T>C
  hgvsp: ENSP00000280083.3:p.Leu566Pro
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1661T>C
  hgvsp: ENSP00000343897.3:p.Leu554Pro
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1712T>C
  hgvsp: ENSP00000379462.2:p.Leu571Pro
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1610T>C
  hgvsp: ENSP00000450449.1:p.Leu537Pro
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1568T>C
  hgvsp: ENSP00000343912.3:p.Leu523Pro
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1610T>C
  hgvsp: ENSP00000379468.4:p.Leu537Pro
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1610T>C
  hgvsp: ENSP00000473943.1:p.Leu537Pro
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1472T>C
  hgvsp: ENSP00000452562.1:p.Leu491Pro
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu537Pro
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

14-39796096-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796096
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796096
    reference: chr 14
allele count: 10
allele frequency: 8.237775141689732e-5
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1701C>T
  hgvsp: ENST00000280083.3:c.1701C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1716C>T
  hgvsp: ENST00000396158.2:c.1716C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3306C>T
  hgvsp: ENST00000553728.1:c.3306C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1614C>T
  hgvsp: ENST00000396165.4:c.1614C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1665C>T
  hgvsp: ENST00000341749.3:c.1665C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1461C>T
  hgvsp: ENST00000557038.1:c.1461C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1614C>T
  hgvsp: ENST00000603904.1:c.1614C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1701C>T
  hgvsp: ENST00000341502.5:c.1701C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1572C>T
  hgvsp: ENST00000348007.3:c.1572C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1476C>T
  hgvsp: ENST00000556148.1:c.1476C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1614C>T
  hgvsp: ENST00000553352.1:c.1614C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp538Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

14-39796098-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796098
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796098
    reference: chr 14
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1478A>G
  hgvsp: ENSP00000452562.1:p.His493Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1463A>G
  hgvsp: ENSP00000450869.1:p.His488Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1616A>G
  hgvsp: ENSP00000379468.4:p.His539Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1718A>G
  hgvsp: ENSP00000379462.2:p.His573Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1616A>G
  hgvsp: ENSP00000450449.1:p.His539Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1703A>G
  hgvsp: ENSP00000339286.5:p.His568Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1703A>G
  hgvsp: ENSP00000280083.3:p.His568Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1667A>G
  hgvsp: ENSP00000343897.3:p.His556Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3308A>G
  hgvsp: ENSP00000452252.1:p.His1103Arg
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1616A>G
  hgvsp: ENSP00000473943.1:p.His539Arg
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1574A>G
  hgvsp: ENSP00000343912.3:p.His525Arg
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His539Arg
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/14-39796100-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796100
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796100
    reference: chr 14
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1465C>A
  hgvsp: ENSP00000450869.1:p.Gln489Lys
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1669C>A
  hgvsp: ENSP00000343897.3:p.Gln557Lys
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1720C>A
  hgvsp: ENSP00000379462.2:p.Gln574Lys
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1618C>A
  hgvsp: ENSP00000473943.1:p.Gln540Lys
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1576C>A
  hgvsp: ENSP00000343912.3:p.Gln526Lys
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3310C>A
  hgvsp: ENSP00000452252.1:p.Gln1104Lys
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1705C>A
  hgvsp: ENSP00000280083.3:p.Gln569Lys
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1705C>A
  hgvsp: ENSP00000339286.5:p.Gln569Lys
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1618C>A
  hgvsp: ENSP00000379468.4:p.Gln540Lys
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1480C>A
  hgvsp: ENSP00000452562.1:p.Gln494Lys
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1618C>A
  hgvsp: ENSP00000450449.1:p.Gln540Lys
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln540Lys
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

14-39796100-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796100
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796100
    reference: chr 14
allele count: 4
allele frequency: 3.295164346321773e-5
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1618C>G
  hgvsp: ENSP00000379468.4:p.Gln540Glu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1705C>G
  hgvsp: ENSP00000339286.5:p.Gln569Glu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1705C>G
  hgvsp: ENSP00000280083.3:p.Gln569Glu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1576C>G
  hgvsp: ENSP00000343912.3:p.Gln526Glu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1720C>G
  hgvsp: ENSP00000379462.2:p.Gln574Glu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1465C>G
  hgvsp: ENSP00000450869.1:p.Gln489Glu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1669C>G
  hgvsp: ENSP00000343897.3:p.Gln557Glu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1618C>G
  hgvsp: ENSP00000450449.1:p.Gln540Glu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3310C>G
  hgvsp: ENSP00000452252.1:p.Gln1104Glu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1480C>G
  hgvsp: ENSP00000452562.1:p.Gln494Glu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1618C>G
  hgvsp: ENSP00000473943.1:p.Gln540Glu
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln540Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

14-39796105-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796105
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796105
    reference: chr 14
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1470T>G
  hgvsp: ENSP00000450869.1:p.Ile490Met
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1710T>G
  hgvsp: ENSP00000339286.5:p.Ile570Met
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1710T>G
  hgvsp: ENSP00000280083.3:p.Ile570Met
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1623T>G
  hgvsp: ENSP00000379468.4:p.Ile541Met
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1725T>G
  hgvsp: ENSP00000379462.2:p.Ile575Met
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1623T>G
  hgvsp: ENSP00000450449.1:p.Ile541Met
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3315T>G
  hgvsp: ENSP00000452252.1:p.Ile1105Met
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1623T>G
  hgvsp: ENSP00000473943.1:p.Ile541Met
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1485T>G
  hgvsp: ENSP00000452562.1:p.Ile495Met
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1674T>G
  hgvsp: ENSP00000343897.3:p.Ile558Met
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1581T>G
  hgvsp: ENSP00000343912.3:p.Ile527Met
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile541Met
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/14-39796127-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796127
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796127
    reference: chr 14
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1732A>C
  hgvsp: ENSP00000339286.5:p.Ser578Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1603A>C
  hgvsp: ENSP00000343912.3:p.Ser535Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1507A>C
  hgvsp: ENSP00000452562.1:p.Ser503Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1492A>C
  hgvsp: ENSP00000450869.1:p.Ser498Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1747A>C
  hgvsp: ENSP00000379462.2:p.Ser583Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1696A>C
  hgvsp: ENSP00000343897.3:p.Ser566Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3337A>C
  hgvsp: ENSP00000452252.1:p.Ser1113Arg
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1645A>C
  hgvsp: ENSP00000379468.4:p.Ser549Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1732A>C
  hgvsp: ENSP00000280083.3:p.Ser578Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1645A>C
  hgvsp: ENSP00000473943.1:p.Ser549Arg
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1645A>C
  hgvsp: ENSP00000450449.1:p.Ser549Arg
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser549Arg
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum

14-39796132-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796132
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796132
    reference: chr 14
allele count: 5
allele frequency: 4.120109430106464e-5
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1497T>G
  hgvsp: ENSP00000450869.1:p.Cys499Trp
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1512T>G
  hgvsp: ENSP00000452562.1:p.Cys504Trp
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1650T>G
  hgvsp: ENSP00000473943.1:p.Cys550Trp
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1737T>G
  hgvsp: ENSP00000280083.3:p.Cys579Trp
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1752T>G
  hgvsp: ENSP00000379462.2:p.Cys584Trp
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1701T>G
  hgvsp: ENSP00000343897.3:p.Cys567Trp
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1737T>G
  hgvsp: ENSP00000339286.5:p.Cys579Trp
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1608T>G
  hgvsp: ENSP00000343912.3:p.Cys536Trp
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1650T>G
  hgvsp: ENSP00000450449.1:p.Cys550Trp
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3342T>G
  hgvsp: ENSP00000452252.1:p.Cys1114Trp
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1650T>G
  hgvsp: ENSP00000379468.4:p.Cys550Trp
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys550Trp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

14-39796133-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796133
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796133
    reference: chr 14
allele count: 6
allele frequency: 4.944294284395807e-5
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1513G>T
  hgvsp: ENSP00000452562.1:p.Asp505Tyr
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1651G>T
  hgvsp: ENSP00000379468.4:p.Asp551Tyr
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1609G>T
  hgvsp: ENSP00000343912.3:p.Asp537Tyr
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1753G>T
  hgvsp: ENSP00000379462.2:p.Asp585Tyr
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1651G>T
  hgvsp: ENSP00000473943.1:p.Asp551Tyr
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3343G>T
  hgvsp: ENSP00000452252.1:p.Asp1115Tyr
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1651G>T
  hgvsp: ENSP00000450449.1:p.Asp551Tyr
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1738G>T
  hgvsp: ENSP00000280083.3:p.Asp580Tyr
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1498G>T
  hgvsp: ENSP00000450869.1:p.Asp500Tyr
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1738G>T
  hgvsp: ENSP00000339286.5:p.Asp580Tyr
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1702G>T
  hgvsp: ENSP00000343897.3:p.Asp568Tyr
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp551Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

14-39796134-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796134
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796134
    reference: chr 14
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1652A>G
  hgvsp: ENSP00000473943.1:p.Asp551Gly
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1499A>G
  hgvsp: ENSP00000450869.1:p.Asp500Gly
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1739A>G
  hgvsp: ENSP00000339286.5:p.Asp580Gly
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3344A>G
  hgvsp: ENSP00000452252.1:p.Asp1115Gly
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1754A>G
  hgvsp: ENSP00000379462.2:p.Asp585Gly
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1652A>G
  hgvsp: ENSP00000450449.1:p.Asp551Gly
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1703A>G
  hgvsp: ENSP00000343897.3:p.Asp568Gly
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1514A>G
  hgvsp: ENSP00000452562.1:p.Asp505Gly
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1739A>G
  hgvsp: ENSP00000280083.3:p.Asp580Gly
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1610A>G
  hgvsp: ENSP00000343912.3:p.Asp537Gly
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1652A>G
  hgvsp: ENSP00000379468.4:p.Asp551Gly
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp551Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

14-39796138-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796138
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796138
    reference: chr 14
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1743G>T
  hgvsp: ENSP00000339286.5:p.Arg581Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1758G>T
  hgvsp: ENSP00000379462.2:p.Arg586Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1518G>T
  hgvsp: ENSP00000452562.1:p.Arg506Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1503G>T
  hgvsp: ENSP00000450869.1:p.Arg501Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1743G>T
  hgvsp: ENSP00000280083.3:p.Arg581Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1656G>T
  hgvsp: ENSP00000450449.1:p.Arg552Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1656G>T
  hgvsp: ENSP00000379468.4:p.Arg552Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1707G>T
  hgvsp: ENSP00000343897.3:p.Arg569Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1614G>T
  hgvsp: ENSP00000343912.3:p.Arg538Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1656G>T
  hgvsp: ENSP00000473943.1:p.Arg552Ser
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3348G>T
  hgvsp: ENSP00000452252.1:p.Arg1116Ser
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg552Ser
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

14-39796141-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796141
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796141
    reference: chr 14
allele count: 2
allele frequency: 1.648478454386601e-5
allele num: 121324
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1761A>G
  hgvsp: ENST00000396158.2:c.1761A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1617A>G
  hgvsp: ENST00000348007.3:c.1617A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1521A>G
  hgvsp: ENST00000556148.1:c.1521A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1746A>G
  hgvsp: ENST00000280083.3:c.1746A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1746A>G
  hgvsp: ENST00000341502.5:c.1746A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1710A>G
  hgvsp: ENST00000341749.3:c.1710A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1659A>G
  hgvsp: ENST00000396165.4:c.1659A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1659A>G
  hgvsp: ENST00000553352.1:c.1659A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1659A>G
  hgvsp: ENST00000603904.1:c.1659A>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1506A>G
  hgvsp: ENST00000557038.1:c.1506A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3351A>G
  hgvsp: ENST00000553728.1:c.3351A>G(p.%3D)
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu553Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/14-39796144-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796144
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796144
    reference: chr 14
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1662C>A
  hgvsp: ENST00000603904.1:c.1662C>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1509C>A
  hgvsp: ENST00000557038.1:c.1509C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1713C>A
  hgvsp: ENST00000341749.3:c.1713C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1764C>A
  hgvsp: ENST00000396158.2:c.1764C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1620C>A
  hgvsp: ENST00000348007.3:c.1620C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1662C>A
  hgvsp: ENST00000553352.1:c.1662C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1749C>A
  hgvsp: ENST00000280083.3:c.1749C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3354C>A
  hgvsp: ENST00000553728.1:c.3354C>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1524C>A
  hgvsp: ENST00000556148.1:c.1524C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1662C>A
  hgvsp: ENST00000396165.4:c.1662C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1749C>A
  hgvsp: ENST00000341502.5:c.1749C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr554Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

14-39796144-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796144
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796144
    reference: chr 14
allele count: 50
allele frequency: 4.12173970389422e-4
allele num: 121308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1749C>G
  hgvsp: ENST00000280083.3:c.1749C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1713C>G
  hgvsp: ENST00000341749.3:c.1713C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1509C>G
  hgvsp: ENST00000557038.1:c.1509C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1764C>G
  hgvsp: ENST00000396158.2:c.1764C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3354C>G
  hgvsp: ENST00000553728.1:c.3354C>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1749C>G
  hgvsp: ENST00000341502.5:c.1749C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1662C>G
  hgvsp: ENST00000396165.4:c.1662C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1662C>G
  hgvsp: ENST00000553352.1:c.1662C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1620C>G
  hgvsp: ENST00000348007.3:c.1620C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1524C>G
  hgvsp: ENST00000556148.1:c.1524C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1662C>G
  hgvsp: ENST00000603904.1:c.1662C>G(p.%3D)
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr554Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

14-39796144-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796144
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796144
    reference: chr 14
allele count: 2
allele frequency: 1.648695881557688e-5
allele num: 121308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1662C>T
  hgvsp: ENST00000553352.1:c.1662C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1509C>T
  hgvsp: ENST00000557038.1:c.1509C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1662C>T
  hgvsp: ENST00000396165.4:c.1662C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3354C>T
  hgvsp: ENST00000553728.1:c.3354C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1620C>T
  hgvsp: ENST00000348007.3:c.1620C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1713C>T
  hgvsp: ENST00000341749.3:c.1713C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1764C>T
  hgvsp: ENST00000396158.2:c.1764C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1749C>T
  hgvsp: ENST00000280083.3:c.1749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1749C>T
  hgvsp: ENST00000341502.5:c.1749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1662C>T
  hgvsp: ENST00000603904.1:c.1662C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1524C>T
  hgvsp: ENST00000556148.1:c.1524C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr554Thr
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

14-39796145-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796145
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796145
    reference: chr 14
allele count: 5
allele frequency: 4.121943578836293e-5
allele num: 121302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1525G>A
  hgvsp: ENSP00000452562.1:p.Asp509Asn
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1621G>A
  hgvsp: ENSP00000343912.3:p.Asp541Asn
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1663G>A
  hgvsp: ENSP00000450449.1:p.Asp555Asn
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1663G>A
  hgvsp: ENSP00000379468.4:p.Asp555Asn
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3355G>A
  hgvsp: ENSP00000452252.1:p.Asp1119Asn
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1510G>A
  hgvsp: ENSP00000450869.1:p.Asp504Asn
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1765G>A
  hgvsp: ENSP00000379462.2:p.Asp589Asn
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1750G>A
  hgvsp: ENSP00000339286.5:p.Asp584Asn
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1714G>A
  hgvsp: ENSP00000343897.3:p.Asp572Asn
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1663G>A
  hgvsp: ENSP00000473943.1:p.Asp555Asn
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1750G>A
  hgvsp: ENSP00000280083.3:p.Asp584Asn
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp555Asn
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

14-39796149-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796149
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796149
    reference: chr 14
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3359C>T
  hgvsp: ENSP00000452252.1:p.Pro1120Leu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1514C>T
  hgvsp: ENSP00000450869.1:p.Pro505Leu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1625C>T
  hgvsp: ENSP00000343912.3:p.Pro542Leu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1529C>T
  hgvsp: ENSP00000452562.1:p.Pro510Leu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1754C>T
  hgvsp: ENSP00000339286.5:p.Pro585Leu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1667C>T
  hgvsp: ENSP00000473943.1:p.Pro556Leu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1667C>T
  hgvsp: ENSP00000450449.1:p.Pro556Leu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1769C>T
  hgvsp: ENSP00000379462.2:p.Pro590Leu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1718C>T
  hgvsp: ENSP00000343897.3:p.Pro573Leu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1754C>T
  hgvsp: ENSP00000280083.3:p.Pro585Leu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1667C>T
  hgvsp: ENSP00000379468.4:p.Pro556Leu
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro556Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

14-39796153-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796153
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796153
    reference: chr 14
allele count: 158
allele frequency: 1.302985320798285e-3
allele num: 121260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1758T>C
  hgvsp: ENST00000280083.3:c.1758T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1773T>C
  hgvsp: ENST00000396158.2:c.1773T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1671T>C
  hgvsp: ENST00000553352.1:c.1671T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1518T>C
  hgvsp: ENST00000557038.1:c.1518T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1533T>C
  hgvsp: ENST00000556148.1:c.1533T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1671T>C
  hgvsp: ENST00000603904.1:c.1671T>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3363T>C
  hgvsp: ENST00000553728.1:c.3363T>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1629T>C
  hgvsp: ENST00000348007.3:c.1629T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1722T>C
  hgvsp: ENST00000341749.3:c.1722T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1671T>C
  hgvsp: ENST00000396165.4:c.1671T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1758T>C
  hgvsp: ENST00000341502.5:c.1758T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7199
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14874
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
hgvs: p.His557His
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

14-39796159-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796159
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796159
    reference: chr 14
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1728T>C
  hgvsp: ENST00000341749.3:c.1728T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1524T>C
  hgvsp: ENST00000557038.1:c.1524T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1764T>C
  hgvsp: ENST00000341502.5:c.1764T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1764T>C
  hgvsp: ENST00000280083.3:c.1764T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1539T>C
  hgvsp: ENST00000556148.1:c.1539T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1635T>C
  hgvsp: ENST00000348007.3:c.1635T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1779T>C
  hgvsp: ENST00000396158.2:c.1779T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1677T>C
  hgvsp: ENST00000603904.1:c.1677T>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3369T>C
  hgvsp: ENST00000553728.1:c.3369T>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1677T>C
  hgvsp: ENST00000553352.1:c.1677T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1677T>C
  hgvsp: ENST00000396165.4:c.1677T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala559Ala
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

14-39796169-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796169
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796169
    reference: chr 14
allele count: 1
allele frequency: 8.253957772752034e-6
allele num: 121154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1687A>G
  hgvsp: ENSP00000450449.1:p.Thr563Ala
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3379A>G
  hgvsp: ENSP00000452252.1:p.Thr1127Ala
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1774A>G
  hgvsp: ENSP00000280083.3:p.Thr592Ala
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1774A>G
  hgvsp: ENSP00000339286.5:p.Thr592Ala
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1687A>G
  hgvsp: ENSP00000379468.4:p.Thr563Ala
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1789A>G
  hgvsp: ENSP00000379462.2:p.Thr597Ala
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1549A>G
  hgvsp: ENSP00000452562.1:p.Thr517Ala
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1534A>G
  hgvsp: ENSP00000450869.1:p.Thr512Ala
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1738A>G
  hgvsp: ENSP00000343897.3:p.Thr580Ala
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1687A>G
  hgvsp: ENSP00000473943.1:p.Thr563Ala
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1645A>G
  hgvsp: ENSP00000343912.3:p.Thr549Ala
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr563Ala
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

14-39796184-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796184
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796184
    reference: chr 14
allele count: 1
allele frequency: 8.269930532583527e-6
allele num: 120920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1753C>T
  hgvsp: ENSP00000343897.3:p.Pro585Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1804C>T
  hgvsp: ENSP00000379462.2:p.Pro602Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1702C>T
  hgvsp: ENSP00000473943.1:p.Pro568Ser
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1702C>T
  hgvsp: ENSP00000450449.1:p.Pro568Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1789C>T
  hgvsp: ENSP00000339286.5:p.Pro597Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1549C>T
  hgvsp: ENSP00000450869.1:p.Pro517Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1702C>T
  hgvsp: ENSP00000379468.4:p.Pro568Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1660C>T
  hgvsp: ENSP00000343912.3:p.Pro554Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3394C>T
  hgvsp: ENSP00000452252.1:p.Pro1132Ser
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1789C>T
  hgvsp: ENSP00000280083.3:p.Pro597Ser
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1564C>T
  hgvsp: ENSP00000452562.1:p.Pro522Ser
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro568Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

14-39796185-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796185
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796185
    reference: chr 14
allele count: 1
allele frequency: 8.273214640280627e-6
allele num: 120872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1661C>T
  hgvsp: ENSP00000343912.3:p.Pro554Leu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1790C>T
  hgvsp: ENSP00000339286.5:p.Pro597Leu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1550C>T
  hgvsp: ENSP00000450869.1:p.Pro517Leu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3395C>T
  hgvsp: ENSP00000452252.1:p.Pro1132Leu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1790C>T
  hgvsp: ENSP00000280083.3:p.Pro597Leu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1703C>T
  hgvsp: ENSP00000473943.1:p.Pro568Leu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1565C>T
  hgvsp: ENSP00000452562.1:p.Pro522Leu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1703C>T
  hgvsp: ENSP00000450449.1:p.Pro568Leu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1754C>T
  hgvsp: ENSP00000343897.3:p.Pro585Leu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1805C>T
  hgvsp: ENSP00000379462.2:p.Pro602Leu
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1703C>T
  hgvsp: ENSP00000379468.4:p.Pro568Leu
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro568Leu
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

14-39796186-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796186
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796186
    reference: chr 14
allele count: 1
allele frequency: 8.273762245168123e-6
allele num: 120864
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1791T>C
  hgvsp: ENST00000341502.5:c.1791T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1704T>C
  hgvsp: ENST00000396165.4:c.1704T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1755T>C
  hgvsp: ENST00000341749.3:c.1755T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1551T>C
  hgvsp: ENST00000557038.1:c.1551T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1806T>C
  hgvsp: ENST00000396158.2:c.1806T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1704T>C
  hgvsp: ENST00000553352.1:c.1704T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3396T>C
  hgvsp: ENST00000553728.1:c.3396T>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1662T>C
  hgvsp: ENST00000348007.3:c.1662T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1791T>C
  hgvsp: ENST00000280083.3:c.1791T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1566T>C
  hgvsp: ENST00000556148.1:c.1566T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1704T>C
  hgvsp: ENST00000603904.1:c.1704T>C(p.%3D)
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro568Pro
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

14-39796186-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796186
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796186
    reference: chr 14
allele count: 11
allele frequency: 9.101138469684935e-5
allele num: 120864
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1662T>G
  hgvsp: ENST00000348007.3:c.1662T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3396T>G
  hgvsp: ENST00000553728.1:c.3396T>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1551T>G
  hgvsp: ENST00000557038.1:c.1551T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1806T>G
  hgvsp: ENST00000396158.2:c.1806T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1704T>G
  hgvsp: ENST00000553352.1:c.1704T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1791T>G
  hgvsp: ENST00000280083.3:c.1791T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1755T>G
  hgvsp: ENST00000341749.3:c.1755T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1566T>G
  hgvsp: ENST00000556148.1:c.1566T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1791T>G
  hgvsp: ENST00000341502.5:c.1791T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1704T>G
  hgvsp: ENST00000396165.4:c.1704T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1704T>G
  hgvsp: ENST00000603904.1:c.1704T>G(p.%3D)
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Pro568Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

14-39796197-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796197
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796197
    reference: chr 14
allele count: 12
allele frequency: 9.984025559105431e-5
allele num: 120192
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1673A>G
  hgvsp: ENSP00000343912.3:p.Gln558Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1802A>G
  hgvsp: ENSP00000339286.5:p.Gln601Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1715A>G
  hgvsp: ENSP00000473943.1:p.Gln572Arg
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1715A>G
  hgvsp: ENSP00000450449.1:p.Gln572Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1577A>G
  hgvsp: ENSP00000452562.1:p.Gln526Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1715A>G
  hgvsp: ENSP00000379468.4:p.Gln572Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1562A>G
  hgvsp: ENSP00000450869.1:p.Gln521Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1766A>G
  hgvsp: ENSP00000343897.3:p.Gln589Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1817A>G
  hgvsp: ENSP00000379462.2:p.Gln606Arg
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3407A>G
  hgvsp: ENSP00000452252.1:p.Gln1136Arg
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1802A>G
  hgvsp: ENSP00000280083.3:p.Gln601Arg
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19226
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14545
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln572Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

14-39796202-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796202
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796202
    reference: chr 14
allele count: 4
allele frequency: 3.334000133360006e-5
allele num: 119976
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1720C>T
  hgvsp: ENSP00000473943.1:p.Arg574Cys
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1822C>T
  hgvsp: ENSP00000379462.2:p.Arg608Cys
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1771C>T
  hgvsp: ENSP00000343897.3:p.Arg591Cys
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1567C>T
  hgvsp: ENSP00000450869.1:p.Arg523Cys
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1807C>T
  hgvsp: ENSP00000280083.3:p.Arg603Cys
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1720C>T
  hgvsp: ENSP00000450449.1:p.Arg574Cys
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3412C>T
  hgvsp: ENSP00000452252.1:p.Arg1138Cys
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1807C>T
  hgvsp: ENSP00000339286.5:p.Arg603Cys
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1678C>T
  hgvsp: ENSP00000343912.3:p.Arg560Cys
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1720C>T
  hgvsp: ENSP00000379468.4:p.Arg574Cys
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1582C>T
  hgvsp: ENSP00000452562.1:p.Arg528Cys
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg574Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

14-39796206-GGAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796206
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796203
    reference: chr 14
allele count: 1
allele frequency: 8.353381448810478e-6
allele num: 119712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1576_1578delATG
  hgvsp: ENSP00000450869.1:p.Met526del
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1816_1818delATG
  hgvsp: ENSP00000339286.5:p.Met606del
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1591_1593delATG
  hgvsp: ENSP00000452562.1:p.Met531del
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1687_1689delATG
  hgvsp: ENSP00000343912.3:p.Met563del
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1729_1731delATG
  hgvsp: ENSP00000473943.1:p.Met577del
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1729_1731delATG
  hgvsp: ENSP00000450449.1:p.Met577del
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1729_1731delATG
  hgvsp: ENSP00000379468.4:p.Met577del
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1831_1833delATG
  hgvsp: ENSP00000379462.2:p.Met611del
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3421_3423delATG
  hgvsp: ENSP00000452252.1:p.Met1141del
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1780_1782delATG
  hgvsp: ENSP00000343897.3:p.Met594del
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1816_1818delATG
  hgvsp: ENSP00000280083.3:p.Met606del
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met577del
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: GGAT
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

14-39796212-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39796212
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 39796212
    reference: chr 14
allele count: 1
allele frequency: 8.400537634408602e-6
allele num: 119040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000339286
  ensembl transcript: ENST00000341502
  gene symbol: CTAGE5
  hgvsc: ENST00000341502.5:c.1817T>C
  hgvsp: ENSP00000339286.5:p.Met606Thr
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000452252
  ensembl transcript: ENST00000553728
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000553728.1:c.3422T>C
  hgvsp: ENSP00000452252.1:p.Met1141Thr
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000258941
  ensembl protein: ENSP00000473943
  ensembl transcript: ENST00000603904
  gene symbol: RP11-407N17.3
  hgvsc: ENST00000603904.1:c.1730T>C
  hgvsp: ENSP00000473943.1:p.Met577Thr
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000280083
  ensembl transcript: ENST00000280083
  gene symbol: CTAGE5
  hgvsc: ENST00000280083.3:c.1817T>C
  hgvsp: ENSP00000280083.3:p.Met606Thr
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379468
  ensembl transcript: ENST00000396165
  gene symbol: CTAGE5
  hgvsc: ENST00000396165.4:c.1730T>C
  hgvsp: ENSP00000379468.4:p.Met577Thr
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450869
  ensembl transcript: ENST00000557038
  gene symbol: CTAGE5
  hgvsc: ENST00000557038.1:c.1577T>C
  hgvsp: ENSP00000450869.1:p.Met526Thr
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000450449
  ensembl transcript: ENST00000553352
  gene symbol: CTAGE5
  hgvsc: ENST00000553352.1:c.1730T>C
  hgvsp: ENSP00000450449.1:p.Met577Thr
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343897
  ensembl transcript: ENST00000341749
  gene symbol: CTAGE5
  hgvsc: ENST00000341749.3:c.1781T>C
  hgvsp: ENSP00000343897.3:p.Met594Thr
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000379462
  ensembl transcript: ENST00000396158
  gene symbol: CTAGE5
  hgvsc: ENST00000396158.2:c.1832T>C
  hgvsp: ENSP00000379462.2:p.Met611Thr
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000343912
  ensembl transcript: ENST00000348007
  gene symbol: CTAGE5
  hgvsc: ENST00000348007.3:c.1688T>C
  hgvsp: ENSP00000343912.3:p.Met563Thr
  variant of: http://identifiers.org/hgnc/7057
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150527
  ensembl protein: ENSP00000452562
  ensembl transcript: ENST00000556148
  gene symbol: CTAGE5
  hgvsc: ENST00000556148.1:c.1592T>C
  hgvsp: ENSP00000452562.1:p.Met531Thr
  variant of: http://identifiers.org/hgnc/7057
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met577Thr
num of homozygotes: 0
reference allele: T

GenotypeDepth
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9281
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41924
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3230
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 377
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.294e0

FS
type: SiteQuality
SIO_000300: 2.824e0

QD
type: SiteQuality
SIO_000300: 1.324e1

DP
type: SiteQuality
SIO_000300: 1.837827e6

VQSLOD
type: SiteQuality
SIO_000300: -3.143e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.565e0

GenotypeDepth
all individuals: 121
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41928
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3229
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1932
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9276
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

DP
type: SiteQuality
SIO_000300: 1.837533e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

QD
type: SiteQuality
SIO_000300: 1.349e1

GenotypeDepth
all individuals: 242
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41901
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1932
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3228
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 375
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9263
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.955e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.836876e6

VQSLOD
type: SiteQuality
SIO_000300: -1.688e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.301e0

QD
type: SiteQuality
SIO_000300: 1.673e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.144e0

GenotypeDepth
all individuals: 336
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41865
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9254
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.953506544246923e-4
allele num: 10238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.338e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.947e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 1.835653e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1994
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

DP
type: SiteQuality
SIO_000300: 1.832317e6

QD
type: SiteQuality
SIO_000300: 1.21e1

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.936e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

GenotypeDepth
all individuals: 660
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 372
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1993
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1027
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.011602392617753e-5
allele num: 66538
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73370319001387e-4
allele num: 11536
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 2.898e0

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

QD
type: SiteQuality
SIO_000300: 1.451e1

DP
type: SiteQuality
SIO_000300: 1.831418e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.79e-1

GenotypeDepth
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 41634
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1988
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 1027
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variant carriers: 0

GenotypeQuality
all individuals: 558
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variant carriers: 1

GenotypeQuality
all individuals: 370
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variant carriers: 0

GenotypeQuality
all individuals: 9195
bin: 6.75e1
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GenotypeQuality
all individuals: 548
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.741e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -1.327e0

MQRankSum
type: SiteQuality
SIO_000300: -1.115e0

QD
type: SiteQuality
SIO_000300: 2.008e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.828932e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3204
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1977
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506160195198361e-5
allele num: 66394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.824426e6

ReadPosRankSum
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QD
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.046e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.745e0

FS
type: SiteQuality
SIO_000300: 6.184e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1887
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variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507977199384745e-5
allele num: 66314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
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allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.820008e6

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 6.96e-1

BaseQRankSum
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SIO_000300: 9.78e-1

ClippingRankSum
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SIO_000300: 5.02e-1

MQRankSum
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SIO_000300: 9.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
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QD
type: SiteQuality
SIO_000300: 1.012e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7650
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.897397017942886e-5
allele num: 63312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

MQRankSum
type: SiteQuality
SIO_000300: -4.02e-1

QD
type: SiteQuality
SIO_000300: 1.43e1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.599804e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

GenotypeQuality
all individuals: 1076
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4570
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 5.25e1
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GenotypeQuality
all individuals: 1228
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
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GenotypeQuality
all individuals: 9956
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3946
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 900
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.808925365478328e-5
allele num: 62384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10816
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.256256256256256e-5
allele num: 15984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.464711e6

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

QD
type: SiteQuality
SIO_000300: 1.411e1

FS
type: SiteQuality
SIO_000300: 3.393e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.189e0

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 671
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1217
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variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62324
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.251251251251251e-4
allele num: 7992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15976
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.129e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.219e1

DP
type: SiteQuality
SIO_000300: 1.461734e6

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

GenotypeQuality
all individuals: 779
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10551
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GenotypeQuality
all individuals: 20743
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3873
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 719
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 328
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variant carriers: 0

GenotypeQuality
all individuals: 3172
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.619957881095092e-5
allele num: 61730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 1.37877e6

QD
type: SiteQuality
SIO_000300: 1.443e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

GenotypeQuality
all individuals: 535
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2332
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7648
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variant carriers: 0

GenotypeQuality
all individuals: 2384
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variant carriers: 0

GenotypeQuality
all individuals: 1022
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variant carriers: 0

GenotypeQuality
all individuals: 506
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GenotypeQuality
all individuals: 14793
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variant carriers: 0

GenotypeQuality
all individuals: 10198
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variant carriers: 0

GenotypeQuality
all individuals: 103
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GenotypeQuality
all individuals: 4215
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 738
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GenotypeQuality
all individuals: 2899
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variant carriers: 0

GenotypeQuality
all individuals: 6339
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variant carriers: 0

GenotypeQuality
all individuals: 766
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variant carriers: 0

GenotypeQuality
all individuals: 1098
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variant carriers: 0

GenotypeQuality
all individuals: 307
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variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.296680497925311e-4
allele num: 7712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15768
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.307102e6

QD
type: SiteQuality
SIO_000300: 1.535e1

MQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

GenotypeQuality
all individuals: 762
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 736
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variant carriers: 0

GenotypeQuality
all individuals: 7175
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variant carriers: 0

GenotypeQuality
all individuals: 320
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GenotypeQuality
all individuals: 11609
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variant carriers: 0

GenotypeQuality
all individuals: 511
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GenotypeQuality
all individuals: 845
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1203
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variant carriers: 0

GenotypeQuality
all individuals: 2471
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variant carriers: 0

GenotypeQuality
all individuals: 3171
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3525
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.344705331460298e-5
allele num: 59796
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

QD
type: SiteQuality
SIO_000300: 1.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.274785e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

GenotypeQuality
all individuals: 824
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3176
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2393
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3901
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.6824253844342e-5
allele num: 59438
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

DP
type: SiteQuality
SIO_000300: 1.269826e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

QD
type: SiteQuality
SIO_000300: 2.175e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.89e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2220
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.185792349726776e-4
allele num: 9150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.393e1

DP
type: SiteQuality
SIO_000300: 1.255128e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

MQ
type: SiteQuality
SIO_000300: 5.875e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.778e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1693
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 823
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variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093102607847916e-5
allele num: 16412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65706
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.56e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.95e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 3.358e0

MQRankSum
type: SiteQuality
SIO_000300: -1.209e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 2.254426e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1064
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.730574471800244e-5
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525413387027885e-5
allele num: 65556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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BaseQRankSum
type: SiteQuality
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DP
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SIO_000300: 2.28008e6

VQSLOD
type: SiteQuality
SIO_000300: -8.419e-1

MQ
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SIO_000300: 6.045e1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.564e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.47e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.041016031646887e-4
allele num: 9606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.372872048325096e-4
allele num: 65556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.517450682852807e-4
allele num: 6590
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.419e-1

MQ
type: SiteQuality
SIO_000300: 6.045e1

QD
type: SiteQuality
SIO_000300: 1.564e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.28008e6

MQRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.038843692723238e-5
allele num: 62198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11088
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.839e0

QD
type: SiteQuality
SIO_000300: 1.311e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.25e-1

DP
type: SiteQuality
SIO_000300: 2.584895e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

VQSLOD
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7602
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.138433515482696e-4
allele num: 8784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59192
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.073e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQRankSum
type: SiteQuality
SIO_000300: 7.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.88e-1

QD
type: SiteQuality
SIO_000300: 1.273e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

DP
type: SiteQuality
SIO_000300: 2.69038e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.421701053881549e-5
allele num: 13474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56992
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.028e1

ClippingRankSum
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.31e-2

ReadPosRankSum
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QD
type: SiteQuality
SIO_000300: 2.239e1

BaseQRankSum
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SIO_000300: -5.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.216e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.30319222442305e-5
allele num: 43418
num of homozygotes: 0

East Asian
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allele count: 0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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DP
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MQ
type: SiteQuality
SIO_000300: 6.037e1

MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 5.126452494873548e-4
allele num: 5852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 1.831501831501832e-3
allele num: 546
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BaseQRankSum
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QD
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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ReadPosRankSum
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1582
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 254
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 5.64334085778781e-4
allele num: 1772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1536
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.95e-2

FS
type: SiteQuality
SIO_000300: 1.2234e1

VQSLOD
type: SiteQuality
SIO_000300: -5.352e-1

QD
type: SiteQuality
SIO_000300: 1.328e1

DP
type: SiteQuality
SIO_000300: 3.441158e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

GenotypeQuality
all individuals: 3006
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1983
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22180
bin: 7.5e0
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GenotypeQuality
all individuals: 1454
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4335
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2237
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 9.25e1
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GenotypeQuality
all individuals: 713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 942
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.993006993006993e-4
allele num: 1430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4314
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.05e-1

DP
type: SiteQuality
SIO_000300: 3.465687e6

FS
type: SiteQuality
SIO_000300: 5.247e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: -1.048e0

MQ
type: SiteQuality
SIO_000300: 6.08e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.86e-2

QD
type: SiteQuality
SIO_000300: 1.663e1

GenotypeQuality
all individuals: 188
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10879
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
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GenotypeQuality
all individuals: 263
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3771
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 5.25e1
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GenotypeQuality
all individuals: 370
bin: 5.75e1
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GenotypeQuality
all individuals: 712
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 7.25e1
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GenotypeQuality
all individuals: 243
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3820
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1094
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.125e-2
allele num: 800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.68e-2

QD
type: SiteQuality
SIO_000300: 1.301e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.19e-1

MQ
type: SiteQuality
SIO_000300: 6.397e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.03e-1

DP
type: SiteQuality
SIO_000300: 3.562841e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.387e0

GenotypeQuality
all individuals: 54534
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 198
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 514
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 418
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.695652173913044e-5
allele num: 11500
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.954102920723226e-4
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.825483753194597e-4
allele num: 16434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

DP
type: SiteQuality
SIO_000300: 3.594365e6

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

QD
type: SiteQuality
SIO_000300: 2.689e1

MQ
type: SiteQuality
SIO_000300: 6.048e1

FS
type: SiteQuality
SIO_000300: 7.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 43

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 12

GenotypeQuality
all individuals: 494
bin: 6.25e1
variant carriers: 324

GenotypeQuality
all individuals: 54534
bin: 9.75e1
variant carriers: 54498

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 33

GenotypeQuality
all individuals: 51
bin: 2.25e1
variant carriers: 36

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 71

GenotypeQuality
all individuals: 955
bin: 8.75e1
variant carriers: 943

GenotypeQuality
all individuals: 201
bin: 5.25e1
variant carriers: 187

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 102

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 13

GenotypeQuality
all individuals: 514
bin: 7.25e1
variant carriers: 497

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 188

GenotypeQuality
all individuals: 328
bin: 5.75e1
variant carriers: 308

GenotypeQuality
all individuals: 418
bin: 6.75e1
variant carriers: 363

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 105

GenotypeQuality
all individuals: 678
bin: 8.25e1
variant carriers: 660

GenotypeQuality
all individuals: 198
bin: 4.75e1
variant carriers: 189

Latino
type: Population
allele count: 9438
allele frequency: 8.20695652173913e-1
allele num: 11500
num of homozygotes: 3850

European (Non-Finnish)
type: Population
allele count: 62270
allele frequency: 9.347884829014922e-1
allele num: 66614
num of homozygotes: 29073

East Asian
type: Population
allele count: 8211
allele frequency: 9.516689847009736e-1
allele num: 8628
num of homozygotes: 3907

European (Finnish)
type: Population
allele count: 6038
allele frequency: 9.145713420175704e-1
allele num: 6602
num of homozygotes: 2754

South Asian
type: Population
allele count: 14263
allele frequency: 8.678958257271511e-1
allele num: 16434
num of homozygotes: 6182

African
type: Population
allele count: 9786
allele frequency: 9.577216676453317e-1
allele num: 10218
num of homozygotes: 4684

Other
type: Population
allele count: 849
allele frequency: 9.391592920353983e-1
allele num: 904
num of homozygotes: 399

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

DP
type: SiteQuality
SIO_000300: 3.594365e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

FS
type: SiteQuality
SIO_000300: 7.75e-1

QD
type: SiteQuality
SIO_000300: 2.689e1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 6.048e1

GenotypeQuality
all individuals: 54534
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.351067343201129e-4
allele num: 66614
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.825483753194597e-4
allele num: 16434
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.786651008025054e-5
allele num: 10218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.217391304347826e-4
allele num: 11500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

QD
type: SiteQuality
SIO_000300: 2.689e1

FS
type: SiteQuality
SIO_000300: 7.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

DP
type: SiteQuality
SIO_000300: 3.594365e6

MQ
type: SiteQuality
SIO_000300: 6.048e1

GenotypeQuality
all individuals: 20
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
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GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.8e-1
allele num: 50
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

QD
type: SiteQuality
SIO_000300: 1.35e1

MQ
type: SiteQuality
SIO_000300: 6.409999999999999e1

VQSLOD
type: SiteQuality
SIO_000300: 2.158e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.427e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.38e-1

DP
type: SiteQuality
SIO_000300: 9.213e4

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
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GenotypeQuality
all individuals: 10374
bin: 9.75e1
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GenotypeQuality
all individuals: 184
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.25e1
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GenotypeQuality
all individuals: 3604
bin: 8.25e1
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GenotypeQuality
all individuals: 3620
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
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GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9459
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23857
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.049e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.095e0

QD
type: SiteQuality
SIO_000300: 1.066e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.133e0

MQRankSum
type: SiteQuality
SIO_000300: -2.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.02e-1

DP
type: SiteQuality
SIO_000300: 2.23144e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.94e0

GenotypeDepth
all individuals: 2515
bin: 4.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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QD
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ClippingRankSum
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DP
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MQ
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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South Asian
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African
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European (Finnish)
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Other
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Latino
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DP
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FS
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BaseQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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African
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European (Finnish)
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Latino
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Other
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BaseQRankSum
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ClippingRankSum
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
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European (Finnish)
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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QD
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VQSLOD
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MQ
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

Other
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Latino
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East Asian
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African
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South Asian
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European (Non-Finnish)
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MQ
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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FS
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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Latino
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Other
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European (Non-Finnish)
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East Asian
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QD
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MQ
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DP
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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DP
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MQ
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ReadPosRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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QD
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ClippingRankSum
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VQSLOD
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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Latino
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Other
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South Asian
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InbreedingCoeff
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MQ
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DP
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ReadPosRankSum
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VQSLOD
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QD
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ClippingRankSum
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FS
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BaseQRankSum
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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South Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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MQRankSum
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ReadPosRankSum
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MQ
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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DP
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VQSLOD
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InbreedingCoeff
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FS
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QD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Other
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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DP
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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QD
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FS
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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African
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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VQSLOD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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DP
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QD
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 3.028834504482675e-4
allele num: 16508
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
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DP
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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SIO_000300: 1.37e0

InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
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SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997871511227029e-5
allele num: 66714
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 6.049606775559589e-4
allele num: 6612
num of homozygotes: 0

FS
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SIO_000300: 0.0e0

DP
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QD
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MQ
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -3.116e0

ClippingRankSum
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SIO_000300: -1.54e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele num: 11560
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African
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South Asian
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -9.6e-2

MQ
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QD
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InbreedingCoeff
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SIO_000300: -1.0e-4

FS
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DP
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SIO_000300: 2.229408e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.941e1

MQRankSum
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VQSLOD
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FS
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BaseQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -4.4e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 2.312673450508788e-4
allele num: 8648
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African
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Other
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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MQ
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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DP
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QD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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Other
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African
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BaseQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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QD
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MQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 5.78168362627197e-3
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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Other
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FS
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DP
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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QD
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VQSLOD
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

African
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East Asian
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European (Non-Finnish)
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allele num: 66698
num of homozygotes: 0

South Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.230224e6

MQRankSum
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SIO_000300: 3.12e-1

ReadPosRankSum
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SIO_000300: 3.65e-1

QD
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SIO_000300: 1.321e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
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SIO_000300: -8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

East Asian
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allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 3.843936190659235e-4
allele num: 10406
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MQRankSum
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BaseQRankSum
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QD
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FS
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DP
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: 5.3e-3

MQ
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SIO_000300: 5.965e1

ReadPosRankSum
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SIO_000300: 3.19e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -1.437e0

MQ
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SIO_000300: 5.953e1

InbreedingCoeff
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SIO_000300: 1.2e-3

FS
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SIO_000300: 2.608e0

VQSLOD
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DP
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MQRankSum
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ReadPosRankSum
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SIO_000300: 1.32e0

ClippingRankSum
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SIO_000300: -1.311e0

QD
type: SiteQuality
SIO_000300: 1.19e1

GenotypeDepth
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variant carriers: 12

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 158

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

Latino
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allele count: 9
allele frequency: 7.785467128027682e-4
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 1.649769032335473e-4
allele num: 66676
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

African
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allele count: 136
allele frequency: 1.30693830482414e-2
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

ClippingRankSum
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SIO_000300: -8.0e-3

ReadPosRankSum
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FS
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QD
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MQRankSum
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MQ
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SIO_000300: 5.946e1

DP
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SIO_000300: 2.230746e6

BaseQRankSum
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SIO_000300: 4.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.083465141744738e-5
allele num: 16438
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

Other
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InbreedingCoeff
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MQRankSum
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DP
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FS
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VQSLOD
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QD
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BaseQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
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FS
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InbreedingCoeff
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DP
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MQRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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Other
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VQSLOD
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DP
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
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Latino
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allele count: 0
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European (Finnish)
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allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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East Asian
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ReadPosRankSum
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FS
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.874e1

DP
type: SiteQuality
SIO_000300: 2.211255e6

GenotypeDepth
all individuals: 115
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9400
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24688
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3576
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9978
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4918
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.173601679219657e-5
allele num: 16198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.309e1

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

FS
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 2.211385e6

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

GenotypeDepth
all individuals: 115
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24688
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4918
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9400
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9978
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3576
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.652942237182184e-4
allele num: 66548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 2.211385e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

GenotypeDepth
all individuals: 2494
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9241
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24039
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3565
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4878
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9970
bin: 9.75e1
variant carriers: 12

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.630675314765357e-4
allele num: 15726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 2.197039e6

FS
type: SiteQuality
SIO_000300: 3.162e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

MQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

GenotypeDepth
all individuals: 4108
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23981
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9956
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3557
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4859
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3509
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9203
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15580
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.471418653089562e-4
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66320
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.13e-1

QD
type: SiteQuality
SIO_000300: 1.274e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.080000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.192782e6

MQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 2.608e0

GenotypeDepth
all individuals: 261
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3492
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 156
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variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3547
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9953
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9160
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23811
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4841
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50934283213089e-5
allele num: 66254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.87e-1

DP
type: SiteQuality
SIO_000300: 2.187213e6

QD
type: SiteQuality
SIO_000300: 1.524e1

MQ
type: SiteQuality
SIO_000300: 5.252e1

MQRankSum
type: SiteQuality
SIO_000300: -2.119e0

FS
type: SiteQuality
SIO_000300: 2.053e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.491e0

GenotypeDepth
all individuals: 1089
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2235
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3475
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0