11-58722643-T-TCCCAGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722643
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722649
    reference: chr 11
allele count: 2
allele frequency: 1.695835029168363e-5
allele num: 117936
alternate allele: TCCCAGG
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*162-5_*162dupCCCAGG
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.383-5_383dupCCCAGG
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.500-5_500dupCCCAGG
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*327-5_*327dupCCCAGG
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.407-5_407dupCCCAGG
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*327-5_*327dupCCCAGG
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.314-5_314dupCCCAGG
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*327-5_*327dupCCCAGG
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.407-5_407dupCCCAGG
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: T
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-58722646-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722646
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722646
    reference: chr 11
allele count: 2
allele frequency: 1.689560207477993e-5
allele num: 118374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*162-3C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.500-3C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.407-3C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19475G>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*327-3C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1310-3C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.314-3C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.383-3C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*327-3C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8008C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*327-3C>A
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.407-3C>A
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

11-58722667-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722667
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722667
    reference: chr 11
allele count: 3
allele frequency: 2.491818529162583e-5
allele num: 120394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*345G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.425G>C
  hgvsp: ENSP00000300079.5:p.Gly142Ala
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.332G>C
  hgvsp: ENSP00000322223.4:p.Gly111Ala
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*345G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.401G>C
  hgvsp: ENSP00000434652.1:p.Gly134Ala
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19496C>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*345G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*180G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1328G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.518G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8029G>C
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly142Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

11-58722671-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722671
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722671
    reference: chr 11
allele count: 4
allele frequency: 3.316034685722813e-5
allele num: 120626
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.429G>A
  hgvsp: ENST00000300079.5:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.336G>A
  hgvsp: ENST00000317391.4:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*349G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8033G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*184G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.405G>A
  hgvsp: ENST00000526351.1:c.405G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19500C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1332G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*349G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*349G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.522G>A
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu143Glu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

11-58722674-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722674
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722674
    reference: chr 11
allele count: 5
allele frequency: 4.140992513085536e-5
allele num: 120744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1335G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*352G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.339G>A
  hgvsp: ENST00000317391.4:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*187G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8036G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*352G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.408G>A
  hgvsp: ENST00000526351.1:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.432G>A
  hgvsp: ENST00000300079.5:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.525G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19503C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*352G>A
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14037
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly144Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

11-58722674-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722674
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722674
    reference: chr 11
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.408G>C
  hgvsp: ENST00000526351.1:c.408G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.432G>C
  hgvsp: ENST00000300079.5:c.432G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*187G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19503C>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.339G>C
  hgvsp: ENST00000317391.4:c.339G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*352G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.525G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*352G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1335G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8036G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*352G>C
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly144Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

11-58722675-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722675
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722675
    reference: chr 11
allele count: 1
allele frequency: 8.278693953241936e-6
allele num: 120792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*353A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*353A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*188A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19504T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.340A>G
  hgvsp: ENSP00000322223.4:p.Ile114Val
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8037A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.526A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1336A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.433A>G
  hgvsp: ENSP00000300079.5:p.Ile145Val
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*353A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.409A>G
  hgvsp: ENSP00000434652.1:p.Ile137Val
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6777
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile145Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-58722676-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722676
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722676
    reference: chr 11
allele count: 2
allele frequency: 1.655135886656295e-5
allele num: 120836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.410T>A
  hgvsp: ENSP00000434652.1:p.Ile137Lys
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.341T>A
  hgvsp: ENSP00000322223.4:p.Ile114Lys
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8038T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.527T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*189T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*354T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*354T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.434T>A
  hgvsp: ENSP00000300079.5:p.Ile145Lys
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*354T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19505A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1337T>A
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile145Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP

11-58722681-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722681
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722681
    reference: chr 11
allele count: 2
allele frequency: 1.652837922713299e-5
allele num: 121004
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19510C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.415G>A
  hgvsp: ENSP00000434652.1:p.Val139Met
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*359G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8043G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*194G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.532G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.439G>A
  hgvsp: ENSP00000300079.5:p.Val147Met
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1342G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*359G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.346G>A
  hgvsp: ENSP00000322223.4:p.Val116Met
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*359G>A
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val147Met
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

11-58722687-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722687
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722687
    reference: chr 11
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8049A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*365A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.445A>G
  hgvsp: ENSP00000300079.5:p.Thr149Ala
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1348A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19516T>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*365A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.352A>G
  hgvsp: ENSP00000322223.4:p.Thr118Ala
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.421A>G
  hgvsp: ENSP00000434652.1:p.Thr141Ala
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*200A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.538A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*365A>G
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr149Ala
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/11-58722688-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722688
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722688
    reference: chr 11
allele count: 2998
allele frequency: 2.518523496698533e-2
allele num: 119038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1349C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.539C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*366C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.422C>A
  hgvsp: ENSP00000434652.1:p.Thr141Lys
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8050C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.446C>A
  hgvsp: ENSP00000300079.5:p.Thr149Lys
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*201C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*366C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19517G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.353C>A
  hgvsp: ENSP00000322223.4:p.Thr118Lys
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*366C>A
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.25e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 13982
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 6883
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7720
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15754
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 9.75e1
  variant carriers: 2540
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
hgvs: p.Thr149Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

11-58722690-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722690
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722690
    reference: chr 11
allele count: 127
allele frequency: 1.048598840761597e-3
allele num: 121114
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19519A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1351T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8052T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*203T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.541T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.424T>A
  hgvsp: ENSP00000434652.1:p.Phe142Ile
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*368T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.448T>A
  hgvsp: ENSP00000300079.5:p.Phe150Ile
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*368T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.355T>A
  hgvsp: ENSP00000322223.4:p.Phe119Ile
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*368T>A
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14540
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 9.75e1
  variant carriers: 86
genotype quality: GenotypeQuality
hgvs: p.Phe150Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

11-58722694-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722694
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722694
    reference: chr 11
allele count: 2
allele frequency: 1.650682557237418e-5
allele num: 121162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*372C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.545C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*207C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*372C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*372C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.452C>T
  hgvsp: ENSP00000300079.5:p.Ser151Leu
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19523G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1355C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8056C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.359C>T
  hgvsp: ENSP00000322223.4:p.Ser120Leu
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.428C>T
  hgvsp: ENSP00000434652.1:p.Ser143Leu
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8017
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser151Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/11-58722695-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722695
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722695
    reference: chr 11
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.360A>C
  hgvsp: ENST00000317391.4:c.360A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.546A>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.453A>C
  hgvsp: ENST00000300079.5:c.453A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*373A>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*373A>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*208A>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19524T>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.429A>C
  hgvsp: ENST00000526351.1:c.429A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*373A>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1356A>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8057A>C
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8017
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser151Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

11-58722702-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722702
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722702
    reference: chr 11
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.367G>C
  hgvsp: ENSP00000322223.4:p.Val123Leu
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*380G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.460G>C
  hgvsp: ENSP00000300079.5:p.Val154Leu
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1363G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*380G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.436G>C
  hgvsp: ENSP00000434652.1:p.Val146Leu
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*380G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8064G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19531C>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*215G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.553G>C
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val154Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-58722707-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722707
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722707
    reference: chr 11
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19536T>C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.465A>G
  hgvsp: ENST00000300079.5:c.465A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*385A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*385A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.441A>G
  hgvsp: ENST00000526351.1:c.441A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.372A>G
  hgvsp: ENST00000317391.4:c.372A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*220A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*385A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1368A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8069A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.558A>G
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16719
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys155Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

11-58722708-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722708
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722708
    reference: chr 11
allele count: 7
allele frequency: 5.76948437293947e-5
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.442G>C
  hgvsp: ENSP00000434652.1:p.Val148Leu
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*386G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*386G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8070G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1369G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.373G>C
  hgvsp: ENSP00000322223.4:p.Val125Leu
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.466G>C
  hgvsp: ENSP00000300079.5:p.Val156Leu
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*386G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19537C>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*221G>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.559G>C
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val156Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD

11-58722709-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722709
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722709
    reference: chr 11
allele count: 4
allele frequency: 3.296793867963405e-5
allele num: 121330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*387T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.443T>C
  hgvsp: ENSP00000434652.1:p.Val148Ala
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1370T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.467T>C
  hgvsp: ENSP00000300079.5:p.Val156Ala
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19538A>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*222T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.560T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*387T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*387T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.374T>C
  hgvsp: ENSP00000322223.4:p.Val125Ala
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8071T>C
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16725
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val156Ala
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

11-58722716-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722716
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722716
    reference: chr 11
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*229T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.450T>A
  hgvsp: ENSP00000434652.1:p.His150Gln
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*394T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.567T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*394T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8078T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.474T>A
  hgvsp: ENSP00000300079.5:p.His158Gln
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1377T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*394T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19545A>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.381T>A
  hgvsp: ENSP00000322223.4:p.His127Gln
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His158Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

11-58722719-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722719
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722719
    reference: chr 11
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19548C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8081G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*397G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*397G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.477G>T
  hgvsp: ENST00000300079.5:c.477G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.384G>T
  hgvsp: ENST00000317391.4:c.384G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.453G>T
  hgvsp: ENST00000526351.1:c.453G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.570G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*397G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*232G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1380G>T
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser159Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

11-58722722-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722722
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722722
    reference: chr 11
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19551T>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*400A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.480A>G
  hgvsp: ENST00000300079.5:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*400A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.573A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1383A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.456A>G
  hgvsp: ENST00000526351.1:c.456A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8084A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*235A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.387A>G
  hgvsp: ENST00000317391.4:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*400A>G
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg160Arg
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

11-58722725-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722725
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722725
    reference: chr 11
allele count: 3
allele frequency: 2.472065658063878e-5
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.483A>G
  hgvsp: ENST00000300079.5:c.483A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.459A>G
  hgvsp: ENST00000526351.1:c.459A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8087A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1386A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*238A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*403A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*403A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.576A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*403A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.390A>G
  hgvsp: ENST00000317391.4:c.390A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19554T>C
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ala161Ala
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

11-58722725-ACTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722725
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722722
    reference: chr 11
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*407_*409delCTC
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*407_*409delCTC
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1390_1392delCTC
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8091_120+8093delCTC
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.394_396delCTC
  hgvsp: ENSP00000322223.4:p.Leu132del
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.580_582delCTC
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.487_489delCTC
  hgvsp: ENSP00000300079.5:p.Leu163del
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.463_465delCTC
  hgvsp: ENSP00000434652.1:p.Leu155del
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*242_*244delCTC
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19557_755-19555delGAG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*407_*409delCTC
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu163del
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: ACTC
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-58722731-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722731
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722731
    reference: chr 11
allele count: 231
allele frequency: 1.903427818061964e-3
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19560G>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*409C>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.582C>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.465C>G
  hgvsp: ENST00000526351.1:c.465C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.489C>G
  hgvsp: ENST00000300079.5:c.489C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.396C>G
  hgvsp: ENST00000317391.4:c.396C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*244C>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8093C>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*409C>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*409C>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1392C>G
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 16730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8010
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 9.75e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14583
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Leu163Leu
num of homozygotes: 2
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

11-58722734-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722734
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722734
    reference: chr 11
allele count: 14
allele frequency: 1.153611628405214e-4
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.468G>T
  hgvsp: ENSP00000434652.1:p.Leu156Phe
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*412G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19563C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8096G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1395G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.585G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.399G>T
  hgvsp: ENSP00000322223.4:p.Leu133Phe
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.492G>T
  hgvsp: ENSP00000300079.5:p.Leu164Phe
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*412G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*247G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*412G>T
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8046
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu164Phe
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

11-58722735-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722735
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722735
    reference: chr 11
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*413G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*413G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8097G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19564C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.493G>A
  hgvsp: ENSP00000300079.5:p.Val165Ile
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*248G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.586G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*413G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.400G>A
  hgvsp: ENSP00000322223.4:p.Val134Ile
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1396G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.469G>A
  hgvsp: ENSP00000434652.1:p.Val157Ile
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val165Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

11-58722739-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722739
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722739
    reference: chr 11
allele count: 4
allele frequency: 3.29614186594591e-5
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*417C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.404C>T
  hgvsp: ENSP00000322223.4:p.Thr135Met
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*252C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*417C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8101C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1400C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.497C>T
  hgvsp: ENSP00000300079.5:p.Thr166Met
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.473C>T
  hgvsp: ENSP00000434652.1:p.Thr158Met
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*417C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.590C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19568G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr166Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

11-58722748-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722748
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722748
    reference: chr 11
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.599T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.506T>C
  hgvsp: ENSP00000300079.5:p.Ile169Thr
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*426T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*426T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8110T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*426T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.482T>C
  hgvsp: ENSP00000434652.1:p.Ile161Thr
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*261T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1409T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.413T>C
  hgvsp: ENSP00000322223.4:p.Ile138Thr
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19577A>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile169Thr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

11-58722749-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722749
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722749
    reference: chr 11
allele count: 8
allele frequency: 6.592609684543627e-5
allele num: 121348
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.507T>C
  hgvsp: ENST00000300079.5:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8111T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*262T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*427T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*427T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.483T>C
  hgvsp: ENST00000526351.1:c.483T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.600T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1410T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.414T>C
  hgvsp: ENST00000317391.4:c.414T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*427T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19578A>G
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile169Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

11-58722759-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722759
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722759
    reference: chr 11
allele count: 2
allele frequency: 1.649511744523621e-5
allele num: 121248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*437A>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.424A>T
  hgvsp: ENSP00000322223.4:p.Asn142Tyr
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19588T>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.517A>T
  hgvsp: ENSP00000300079.5:p.Asn173Tyr
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.610A>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*272A>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.493A>T
  hgvsp: ENSP00000434652.1:p.Asn165Tyr
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*437A>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1420A>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*437A>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8121A>T
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn173Tyr
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-58722760-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722760
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722760
    reference: chr 11
allele count: 3
allele frequency: 2.474349246148263e-5
allele num: 121244
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*438A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*438A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*438A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.425A>G
  hgvsp: ENSP00000322223.4:p.Asn142Ser
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*273A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.494A>G
  hgvsp: ENSP00000434652.1:p.Asn165Ser
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8122A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.518A>G
  hgvsp: ENSP00000300079.5:p.Asn173Ser
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1421A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.611A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19589T>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asn173Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

11-58722765-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722765
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722765
    reference: chr 11
allele count: 2
allele frequency: 1.650110557407346e-5
allele num: 121204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*443T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*443T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1426T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.616T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.499T>A
  hgvsp: ENSP00000434652.1:p.Ser167Thr
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8127T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*443T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.523T>A
  hgvsp: ENSP00000300079.5:p.Ser175Thr
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.430T>A
  hgvsp: ENSP00000322223.4:p.Ser144Thr
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*278T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19594A>T
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8017
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser175Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

11-58722766-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722766
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722766
    reference: chr 11
allele count: 6
allele frequency: 4.950985246063966e-5
allele num: 121188
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19595G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.617C>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1427C>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*444C>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*444C>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8128C>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.500C>G
  hgvsp: ENSP00000434652.1:p.Ser167Cys
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*279C>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.524C>G
  hgvsp: ENSP00000300079.5:p.Ser175Cys
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.431C>G
  hgvsp: ENSP00000322223.4:p.Ser144Cys
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*444C>G
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16765
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser175Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

11-58722769-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722769
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722769
    reference: chr 11
allele count: 3
allele frequency: 2.476064707824365e-5
allele num: 121160
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19598C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8131G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*447G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.620G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*282G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*447G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.434G>A
  hgvsp: ENSP00000322223.4:p.Ser145Asn
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*447G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1430G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.527G>A
  hgvsp: ENSP00000300079.5:p.Ser176Asn
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.503G>A
  hgvsp: ENSP00000434652.1:p.Ser168Asn
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser176Asn
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

11-58722780-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722780
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722780
    reference: chr 11
allele count: 1
allele frequency: 8.261868173631421e-6
allele num: 121038
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*458C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434652
  ensembl transcript: ENST00000526351
  gene symbol: GLYATL1
  hgvsc: ENST00000526351.1:c.514C>T
  hgvsp: ENSP00000434652.1:p.Leu172Phe
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*458C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1441C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*293C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000533864
  gene symbol: GLYATL1
  hgvsc: ENST00000533864.1:n.631C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*458C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.538C>T
  hgvsp: ENSP00000300079.5:p.Leu180Phe
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.445C>T
  hgvsp: ENSP00000322223.4:p.Leu149Phe
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8142C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19609G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu180Phe
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS

11-58722799-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722799
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722799
    reference: chr 11
allele count: 1
allele frequency: 8.296964970213896e-6
allele num: 120526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*477C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*477C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.557C>T
  hgvsp: ENSP00000300079.5:p.Thr186Ile
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.464C>T
  hgvsp: ENSP00000322223.4:p.Thr155Ile
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*477C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8161C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19628G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*312C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1460C>T
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2704
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr186Ile
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

11-58722805-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722805
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722805
    reference: chr 11
allele count: 1
allele frequency: 8.30937463646486e-6
allele num: 120346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.470A>G
  hgvsp: ENSP00000322223.4:p.His157Arg
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*483A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.563A>G
  hgvsp: ENSP00000300079.5:p.His188Arg
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8167A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*483A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*318A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19634T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1466A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*483A>G
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7950
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2705
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4770
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His188Arg
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/11-58722807-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722807
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722807
    reference: chr 11
allele count: 2
allele frequency: 1.664225802156837e-5
allele num: 120176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*485C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.472C>A
  hgvsp: ENSP00000322223.4:p.Pro158Thr
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19636G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1468C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000432225
  ensembl transcript: ENST00000524881
  gene symbol: GLYATL1
  hgvsc: ENST00000524881.1:c.*485C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*320C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8169C>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.565C>A
  hgvsp: ENSP00000300079.5:p.Pro189Thr
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*485C>A
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2705
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8295
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro189Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

11-58722810-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722810
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722810
    reference: chr 11
allele count: 1
allele frequency: 8.3301401129567e-6
allele num: 120046
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19639C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.475G>T
  hgvsp: ENSP00000322223.4:p.Asp159Tyr
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*488G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1471G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*323G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*488G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.568G>T
  hgvsp: ENSP00000300079.5:p.Asp190Tyr
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8172G>T
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3798
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp190Tyr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

11-58722830-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722830
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722830
    reference: chr 11
allele count: 1
allele frequency: 8.424315945545221e-6
allele num: 118704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*504+4C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.584+4C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*339+4C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1487+4C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19659G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*504+4C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.491+4C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8192C>T
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2617
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20312
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12121
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
hgvs: c.584+4C>T
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

11-58722831-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722831
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722831
    reference: chr 11
allele count: 2
allele frequency: 1.686198465559396e-5
allele num: 118610
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19660T>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*339+5A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.491+5A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8193A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1487+5A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*504+5A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*504+5A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.584+5A>G
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8056
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20188
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4714
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3765
  bin: 8.25e1
  variant carriers: 0
hgvs: c.584+5A>G
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ

11-58722832-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722832
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722832
    reference: chr 11
allele count: 1
allele frequency: 8.432556413802408e-6
allele num: 118588
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.584+6A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.491+6A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*339+6A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*504+6A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19661T>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*504+6A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1487+6A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8194A>G
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12120
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
hgvs: c.584+6A>G
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD

11-58722836-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722836
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722834
    reference: chr 11
allele count: 3
allele frequency: 2.536440190740303e-5
allele num: 118276
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19667_755-19666delAT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1487+11_1487+12delAT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*504+11_*504+12delAT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*339+11_*339+12delAT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.584+11_584+12delAT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.491+11_491+12delAT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*504+11_*504+12delAT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8199_120+8200delAT
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15395
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8002
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12118
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4708
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: CAT
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

11-58722847-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722847
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722847
    reference: chr 11
allele count: 1
allele frequency: 8.538980445734779e-6
allele num: 117110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8209C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*504+21C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.491+21C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*504+21C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*339+21C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1487+21C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.584+21C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19676G>A
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4646
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3727
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

11-58722848-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722848
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722848
    reference: chr 11
allele count: 1
allele frequency: 8.540730744922536e-6
allele num: 117086
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1487+22A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.491+22A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*504+22A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*504+22A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*339+22A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.584+22A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8210A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19677T>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4648
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4006
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

11-58722848-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722848
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722847
    reference: chr 11
allele count: 20
allele frequency: 1.708146148984507e-4
allele num: 117086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8213delT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19678delA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.491+25delT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1487+25delT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.584+25delT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*339+25delT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*504+25delT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*504+25delT
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14347
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13517
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7832
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2683
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: AT
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

11-58722849-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722849
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722849
    reference: chr 11
allele count: 4
allele frequency: 3.419621789830045e-5
allele num: 116972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1487+23T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*504+23T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.584+23T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.491+23T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*339+23T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8211T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19678A>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*504+23T>A
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7674
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3725
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2679
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

11-58722849-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722849
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722849
    reference: chr 11
allele count: 1
allele frequency: 8.549054474575111e-6
allele num: 116972
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.584+23T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*504+23T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*504+23T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8211T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*339+23T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19678A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1487+23T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.491+23T>G
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16857
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3725
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4086
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD

11-58722852-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722852
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722852
    reference: chr 11
allele count: 3
allele frequency: 2.571663694966397e-5
allele num: 116656
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19681T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.584+26A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*504+26A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*339+26A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8214A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.491+26A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1487+26A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*504+26A>G
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7786
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13150
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

11-58722856-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722856
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722856
    reference: chr 11
allele count: 1
allele frequency: 8.635727732776041e-6
allele num: 115798
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8218T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1487+30T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*504+30T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.491+30T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*339+30T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.584+30T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*504+30T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19685A>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12092
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4565
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6954
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

11-58722859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722859
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722859
    reference: chr 11
allele count: 1330
allele frequency: 1.150359811790756e-2
allele num: 115616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.491+33C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*504+33C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*339+33C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1487+33C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19688G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*504+33C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8221C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.584+33C>T
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 4.75e1
  variant carriers: 227
genotype depth: GenotypeDepth
  all individuals: 12368
  bin: 3.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 12618
  bin: 2.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 2.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 7585
  bin: 3.75e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.25e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 4.25e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 5.75e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 9.25e1
  variant carriers: 3
num of homozygotes: 53
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

11-58722860-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722860
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722860
    reference: chr 11
allele count: 7
allele frequency: 6.060815958994251e-5
allele num: 115496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8222G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1487+34G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.584+34G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*504+34G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*339+34G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.491+34G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*504+34G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19689C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12470
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6923
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3940
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13963
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-58722860-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722860
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722860
    reference: chr 11
allele count: 1077
allele frequency: 9.324998268338297e-3
allele num: 115496
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19689C>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*504+34G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*504+34G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1487+34G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8222G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*339+34G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.491+34G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.584+34G>T
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 2.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 4.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 7.5e0
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 12470
  bin: 3.25e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 3.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 12620
  bin: 2.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 5184
  bin: 1.25e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 1.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 4.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3940
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12261
  bin: 9.75e1
  variant carriers: 1007
genotype quality: GenotypeQuality
  all individuals: 6923
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.75e1
  variant carriers: 4
num of homozygotes: 33
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

11-58722866-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58722866
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58722866
    reference: chr 11
allele count: 1
allele frequency: 8.795229467536807e-6
allele num: 113698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*504+40T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*504+40T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*339+40T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1487+40T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19695A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8228T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.584+40T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.491+40T>G
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10294
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

11-58723042-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58723042
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58723042
    reference: chr 11
allele count: 4
allele frequency: 3.40014620628687e-5
allele num: 117642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*340-41T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.585-41T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1488-41T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19871A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.492-41T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8404T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*505-41T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*505-41T>C
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12567
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

11-58723045-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58723045
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58723045
    reference: chr 11
allele count: 1
allele frequency: 8.498776176230622e-6
allele num: 117664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1488-38G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*505-38G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*505-38G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*340-38G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.492-38G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19874C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.585-38G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8407G>A
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3785
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

11-58723053-AGTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58723053
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58723050
    reference: chr 11
allele count: 6
allele frequency: 5.079666096615249e-5
allele num: 118118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1488-24_1488-22delTGT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.492-24_492-22delTGT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*340-24_*340-22delTGT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.585-24_585-22delTGT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19885_755-19883delAAC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8421_120+8423delTGT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*505-24_*505-22delTGT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*505-24_*505-22delTGT
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18275
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12716
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9412
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: AGTT
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ

11-58723056-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58723056
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58723056
    reference: chr 11
allele count: 3
allele frequency: 2.535754133279237e-5
allele num: 118308
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19885A>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*505-27T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1488-27T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.492-27T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8418T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*340-27T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.585-27T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*505-27T>A
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6340
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3821
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

11-58723063-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58723063
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58723063
    reference: chr 11
allele count: 17
allele frequency: 1.42878754769629e-4
allele num: 118982
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.492-20T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.585-20T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1488-20T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*340-20T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*505-20T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8425T>C
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19892A>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*505-20T>C
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12760
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27197
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

11-58723066-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58723066
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58723066
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 119254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*340-17C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19895G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*505-17C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.585-17C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.492-17C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*505-17C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1488-17C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8428C>T
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9473
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3844
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

11-58723076-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58723076
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58723076
    reference: chr 11
allele count: 1
allele frequency: 8.306475728477921e-6
allele num: 120388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*505-7T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1488-7T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8438T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.492-7T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*505-7T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*340-7T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19905A>C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.585-7T>G
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28833
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: c.585-7T>G
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum

11-58723077-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58723077
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58723077
    reference: chr 11
allele count: 119
allele frequency: 9.877322000697224e-4
allele num: 120478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*340-6C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.492-6C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.585-6C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8439C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*505-6C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19906G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1488-6C>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*505-6C>T
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18977
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12828
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 14121
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4500
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.75e1
  variant carriers: 0
hgvs: c.585-6C>T
num of homozygotes: 1
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-58723079-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58723079
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58723079
    reference: chr 11
allele count: 2
allele frequency: 1.657165583985152e-5
allele num: 120688
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*505-4A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19908T>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*340-4A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.492-4A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*505-4A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8441A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1488-4A>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.585-4A>G
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9592
  bin: 6.75e1
  variant carriers: 0
hgvs: c.585-4A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

11-58723082-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58723082
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58723082
    reference: chr 11
allele count: 3
allele frequency: 2.482498386376049e-5
allele num: 120846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8444G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*505-1G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19911C>A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*505-1G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.585-1G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1488-1G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*340-1G>T
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.492-1G>T
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
hgvs: c.585-1G>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

11-58723095-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58723095
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58723096
    reference: chr 11
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.507dupT
  hgvsp: ENSP00000322223.4:p.Lys170Ter
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*520dupT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8460dupT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*355dupT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*520dupT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1503dupT
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19925dupA
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.600dupT
  hgvsp: ENSP00000300079.5:p.Lys201Ter
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3871
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9651
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys201Ter
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

11-58723097-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58723097
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58723097
    reference: chr 11
allele count: 2
allele frequency: 1.649511744523621e-5
allele num: 121248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8459T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.599T>A
  hgvsp: ENSP00000300079.5:p.Phe200Tyr
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.506T>A
  hgvsp: ENSP00000322223.4:p.Phe169Tyr
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1502T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*519T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*354T>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19926A>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*519T>A
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6321
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3193
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Phe200Tyr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-58723108-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58723108
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58723108
    reference: chr 11
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*530C>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.610C>G
  hgvsp: ENSP00000300079.5:p.Gln204Glu
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19937G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.517C>G
  hgvsp: ENSP00000322223.4:p.Gln173Glu
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*530C>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1513C>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8470C>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*365C>G
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6320
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln204Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

11-58723118-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58723118
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58723118
    reference: chr 11
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19947A>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434661
  ensembl transcript: ENST00000530774
  gene symbol: GLYATL1
  hgvsc: ENST00000530774.1:c.*375T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*540T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.620T>G
  hgvsp: ENSP00000300079.5:p.Val207Gly
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*540T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8480T>G
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.527T>G
  hgvsp: ENSP00000322223.4:p.Val176Gly
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1523T>G
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9686
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4533
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val207Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

11-58723131-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58723131
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 58723131
    reference: chr 11
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000434757
  ensembl transcript: ENST00000527708
  gene symbol: GLYATL1
  hgvsc: ENST00000527708.1:c.*553G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534063
  gene symbol: GLYATL1
  hgvsc: ENST00000534063.1:n.120+8493G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000437155
  ensembl transcript: ENST00000530240
  gene symbol: GLYATL1
  hgvsc: ENST00000530240.1:c.*553G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166840
  ensembl transcript: ENST00000534119
  gene symbol: GLYATL1
  hgvsc: ENST00000534119.1:n.1536G>A
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000322223
  ensembl transcript: ENST00000317391
  gene symbol: GLYATL1
  hgvsc: ENST00000317391.4:c.540G>A
  hgvsp: ENST00000317391.4:c.540G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255240
  ensembl transcript: ENST00000533954
  gene symbol: RP11-142C4.6
  hgvsc: ENST00000533954.1:n.755-19960C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166840
  ensembl protein: ENSP00000300079
  ensembl transcript: ENST00000300079
  gene symbol: GLYATL1
  hgvsc: ENST00000300079.5:c.633G>A
  hgvsp: ENST00000300079.5:c.633G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30519
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3872
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly211Gly
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

GenotypeDepth
all individuals: 656
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19443
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14198
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1795
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3131
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2637
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3719
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4694
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7987
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.027917398413371e-5
allele num: 66052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.26e0

FS
type: SiteQuality
SIO_000300: 1.8882e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.568e0

MQ
type: SiteQuality
SIO_000300: 5.108e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.119e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.79e0

VQSLOD
type: SiteQuality
SIO_000300: -1.814e0

DP
type: SiteQuality
SIO_000300: 2.431861e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-2

GenotypeDepth
all individuals: 321
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 363
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2637
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3129
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3718
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7996
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1657
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19869
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14197
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4697
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.003606491685033e-4
allele num: 9982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.913e1

MQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

DP
type: SiteQuality
SIO_000300: 2.437789e6

VQSLOD
type: SiteQuality
SIO_000300: 4.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.703e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 6.396e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.021e1

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21595
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14196
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2637
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8130
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4708
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3138
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3723
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.959163543105149e-4
allele num: 10138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 2.461431e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.138e1

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3140
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21732
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4707
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3726
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8144
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14193
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.504775061565259e-5
allele num: 66596
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.823182711198428e-5
allele num: 10180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16102
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.255e1

FS
type: SiteQuality
SIO_000300: 3.219e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.03e-1

DP
type: SiteQuality
SIO_000300: 2.464437e6

MQ
type: SiteQuality
SIO_000300: 5.932e1

MQRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.71e0

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21849
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3729
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4714
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8155
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14191
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3144
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.091763541924314e-4
allele num: 16172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

DP
type: SiteQuality
SIO_000300: 2.465364e6

QD
type: SiteQuality
SIO_000300: 1.298e1

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4714
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3144
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8155
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21849
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14191
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3729
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.183527083848628e-5
allele num: 16172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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MQRankSum
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -1.99e-1

BaseQRankSum
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DP
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SIO_000300: 2.465364e6

QD
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SIO_000300: 1.298e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.175126590095097e-5
allele num: 16194
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

DP
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SIO_000300: 2.465731e6

ClippingRankSum
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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MQRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00228173411793e-5
allele num: 66616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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MQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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SIO_000300: 2.12e0

FS
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SIO_000300: 1.349e0

DP
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SIO_000300: 2.46644e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

Other
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allele num: 906
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.222493887530562e-4
allele num: 16360
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.89e-1

InbreedingCoeff
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MQ
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DP
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MQRankSum
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SIO_000300: 1.48e0

ReadPosRankSum
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QD
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.501411326647048e-5
allele num: 66604
num of homozygotes: 0

QD
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SIO_000300: 1.711e1

ClippingRankSum
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FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 43

European (Finnish)
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allele count: 583
allele frequency: 9.109375e-2
allele num: 6400
num of homozygotes: 0

East Asian
type: Population
allele count: 90
allele frequency: 1.043599257884972e-2
allele num: 8624
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African
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allele count: 420
allele frequency: 4.275244299674267e-2
allele num: 9824
num of homozygotes: 0

Latino
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allele count: 70
allele frequency: 6.080611535788742e-3
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1780
allele frequency: 2.724045053868756e-2
allele num: 65344
num of homozygotes: 0

Other
type: Population
allele count: 47
allele frequency: 5.316742081447964e-2
allele num: 884
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South Asian
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allele frequency: 4.86322188449848e-4
allele num: 16450
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DP
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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MQ
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FS
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BaseQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 4.320774282751469e-4
allele num: 11572
num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele count: 85
allele frequency: 1.27585482273123e-3
allele num: 66622
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European (Finnish)
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allele frequency: 1.211754013935171e-3
allele num: 6602
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African
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allele count: 21
allele frequency: 2.03843913803145e-3
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Other
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East Asian
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allele frequency: 9.244280101687081e-4
allele num: 8654
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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DP
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QD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

African
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allele count: 0
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Other
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
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ReadPosRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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Latino
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Other
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European (Finnish)
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MQ
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ClippingRankSum
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QD
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InbreedingCoeff
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DP
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MQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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MQRankSum
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QD
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VQSLOD
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MQ
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FS
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InbreedingCoeff
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BaseQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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Other
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South Asian
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQ
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FS
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10368
num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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Latino
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East Asian
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Other
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South Asian
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ClippingRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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African
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European (Non-Finnish)
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South Asian
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European (Finnish)
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East Asian
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InbreedingCoeff
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QD
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MQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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ReadPosRankSum
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FS
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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Other
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ReadPosRankSum
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QD
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DP
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MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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InbreedingCoeff
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QD
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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MQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
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FS
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QD
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MQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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SIO_000300: 7.29e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

DP
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SIO_000300: 2.241395e6

BaseQRankSum
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SIO_000300: 6.18e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
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allele count: 1
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allele num: 10384
num of homozygotes: 0

Other
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allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66708
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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ReadPosRankSum
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MQ
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InbreedingCoeff
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FS
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DP
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MQRankSum
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VQSLOD
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QD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -2.55e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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QD
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FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 5.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 219
allele frequency: 2.108201771274548e-2
allele num: 10388
num of homozygotes: 2

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 9
allele frequency: 7.77336327517706e-4
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.49734656552634e-5
allele num: 66706
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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MQ
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -1.16e-1

FS
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BaseQRankSum
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SIO_000300: -9.52e-1

MQRankSum
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SIO_000300: 4.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-2

DP
type: SiteQuality
SIO_000300: 2.25007e6

GenotypeQuality
all individuals: 3250
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 2
allele frequency: 1.92492781520693e-4
allele num: 10390
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 12
allele frequency: 1.799046505352163e-4
allele num: 66702
num of homozygotes: 0

European (Finnish)
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allele count: 0
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

FS
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QD
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MQ
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ReadPosRankSum
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DP
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MQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

East Asian
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Other
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BaseQRankSum
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FS
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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ReadPosRankSum
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DP
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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South Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 4
allele frequency: 5.996821684507211e-5
allele num: 66702
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FS
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QD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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DP
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 66698
num of homozygotes: 0

South Asian
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BaseQRankSum
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MQRankSum
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FS
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DP
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
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SIO_000300: -1.021e0

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele num: 10386
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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VQSLOD
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FS
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DP
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QD
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InbreedingCoeff
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ClippingRankSum
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MQ
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SIO_000300: 5.828e1

BaseQRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 1.931993817619784e-4
allele num: 10352
num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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East Asian
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South Asian
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Other
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BaseQRankSum
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QD
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MQRankSum
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FS
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DP
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VQSLOD
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InbreedingCoeff
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MQ
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SIO_000300: 5.369e1

ReadPosRankSum
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ClippingRankSum
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SIO_000300: 1.97e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele num: 8652
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Other
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South Asian
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allele num: 16510
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Latino
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European (Finnish)
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MQ
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SIO_000300: 5.908e1

ReadPosRankSum
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QD
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FS
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -2.31e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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South Asian
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African
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allele num: 10336
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East Asian
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MQ
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FS
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66596
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South Asian
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East Asian
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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ReadPosRankSum
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FS
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QD
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VQSLOD
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Other
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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South Asian
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VQSLOD
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BaseQRankSum
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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MQ
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DP
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VQSLOD
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InbreedingCoeff
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509661835748792e-5
allele num: 66240
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

VQSLOD
type: SiteQuality
SIO_000300: -1.18e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

MQRankSum
type: SiteQuality
SIO_000300: -1.327e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.77e0

DP
type: SiteQuality
SIO_000300: 2.212004e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.031e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.131207847946045e-5
allele num: 16310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

FS
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.213e0

DP
type: SiteQuality
SIO_000300: 2.208235e6

MQ
type: SiteQuality
SIO_000300: 5.906e1

QD
type: SiteQuality
SIO_000300: 1.617e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.8833761612967e-5
allele num: 10118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16254
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VQSLOD
type: SiteQuality
SIO_000300: -3.891e-1

FS
type: SiteQuality
SIO_000300: 6.878e0

MQRankSum
type: SiteQuality
SIO_000300: 9.84e-1

DP
type: SiteQuality
SIO_000300: 2.205982e6

BaseQRankSum
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SIO_000300: -3.22e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

ClippingRankSum
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SIO_000300: -1.199e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e0

QD
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SIO_000300: 1.208e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514830187535977e-5
allele num: 66014
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.689e0

DP
type: SiteQuality
SIO_000300: 2.202517e6

QD
type: SiteQuality
SIO_000300: 1.219e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.83e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65490
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.415191172696946e-5
allele num: 15588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

FS
type: SiteQuality
SIO_000300: 1.585e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.188e0

QD
type: SiteQuality
SIO_000300: 7.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 2.174206e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.894e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.641e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313743637204998e-4
allele num: 8644
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.78e-1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.939e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 15544
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 888
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9930
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.528537800739812e-5
allele num: 65422
num of homozygotes: 0

MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 3.472222222222222e-4
allele num: 8640
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Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65316
num of homozygotes: 0

Latino
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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DP
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MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.544401544401544e-5
allele num: 64750
num of homozygotes: 0

Other
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East Asian
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allele count: 0
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num of homozygotes: 0

Latino
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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DP
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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VQSLOD
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FS
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7711
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3727
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17212
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3041
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12116
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544401544401544e-5
allele num: 64750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.69e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

DP
type: SiteQuality
SIO_000300: 2.122567e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

GenotypeQuality
all individuals: 130
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.5e0
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GenotypeQuality
all individuals: 17212
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 12116
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 4648
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3727
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7711
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3041
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4006
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.088803088803089e-4
allele num: 64750
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.25e0

QD
type: SiteQuality
SIO_000300: 1.258e1

DP
type: SiteQuality
SIO_000300: 2.122567e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4642
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 991
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4086
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16857
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12096
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.469210754553339e-4
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.026e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.74e-1

DP
type: SiteQuality
SIO_000300: 2.117184e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.326e1

GenotypeQuality
all individuals: 521
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2679
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12096
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 177
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4642
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7674
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.026e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

DP
type: SiteQuality
SIO_000300: 2.117184e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 1.326e1

GenotypeQuality
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7559
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15498
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12096
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3720
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2679
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5485149741398e-5
allele num: 64578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.35189941868325e-4
allele num: 14794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.98e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.94e-1

DP
type: SiteQuality
SIO_000300: 2.099835e6

QD
type: SiteQuality
SIO_000300: 1.691e1

GenotypeQuality
all individuals: 1655
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3909
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2676
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3699
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2888
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13562
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559089491736826e-5
allele num: 64140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.443e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.24e0

QD
type: SiteQuality
SIO_000300: 1.596e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 2.068469e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e0

VQSLOD
type: SiteQuality
SIO_000300: -1.271e0

MQ
type: SiteQuality
SIO_000300: 5.84e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 2099
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4004
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14066
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2838
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6834
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12592
bin: 9.75e1
variant carriers: 1261

GenotypeQuality
all individuals: 3601
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 4464
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 8.75e1
variant carriers: 1

African
type: Population
allele count: 4
allele frequency: 4.206098843322818e-4
allele num: 9510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 33
allele frequency: 5.148687864698723e-4
allele num: 64094
num of homozygotes: 0

East Asian
type: Population
allele count: 183
allele frequency: 2.12592936802974e-2
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 1.384466288245881e-3
allele num: 14446
num of homozygotes: 0

Latino
type: Population
allele count: 1086
allele frequency: 9.44840786497303e-2
allele num: 11494
num of homozygotes: 53

Other
type: Population
allele count: 2
allele frequency: 2.288329519450801e-3
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.034901365705615e-4
allele num: 6590
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.36e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

QD
type: SiteQuality
SIO_000300: 1.491e1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

DP
type: SiteQuality
SIO_000300: 2.064333e6

GenotypeQuality
all individuals: 2898
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4543
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3636
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12261
bin: 9.75e1
variant carriers: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.056859015007398e-4
allele num: 9462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.370900231148872e-5
allele num: 64028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.318e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.778e0

VQSLOD
type: SiteQuality
SIO_000300: 8.179999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.96e-2

MQ
type: SiteQuality
SIO_000300: 5.669e1

DP
type: SiteQuality
SIO_000300: 2.039441e6

MQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeQuality
all individuals: 509
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1693
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 490
bin: 4.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2898
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 927
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 13963
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2600
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1634
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4543
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3636
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 237
bin: 5.25e1
variant carriers: 6

South Asian
type: Population
allele count: 714
allele frequency: 4.947339246119734e-2
allele num: 14432
num of homozygotes: 25

Latino
type: Population
allele count: 5
allele frequency: 4.345558838866678e-4
allele num: 11506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.582650894752805e-4
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 60
allele frequency: 9.370900231148872e-4
allele num: 64028
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.113718030014796e-4
allele num: 9462
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.298850574712644e-3
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 289
allele frequency: 3.358902835890284e-2
allele num: 8604
num of homozygotes: 8

BaseQRankSum
type: SiteQuality
SIO_000300: -2.778e0

QD
type: SiteQuality
SIO_000300: 1.318e1

MQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.96e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.179999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.669e1

DP
type: SiteQuality
SIO_000300: 2.039441e6

GenotypeQuality
all individuals: 2564
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3506
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11327
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.579629103086595e-5
allele num: 63306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.9e1

MQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.27e-1

FS
type: SiteQuality
SIO_000300: 3.735e0

VQSLOD
type: SiteQuality
SIO_000300: -2.84e-2

DP
type: SiteQuality
SIO_000300: 1.962503e6

QD
type: SiteQuality
SIO_000300: 1.389e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
all individuals: 9255
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6345
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3798
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.663091629750524e-4
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.28e1

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

FS
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 1.831801e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

GenotypeQuality
all individuals: 243
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4458
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3169
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23655
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.035317292809905e-5
allele num: 14214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.830000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

DP
type: SiteQuality
SIO_000300: 1.839513e6

FS
type: SiteQuality
SIO_000300: 5.017e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.118e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.508e0

GenotypeQuality
all individuals: 1841
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 6343
bin: 9.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
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variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3815
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4490
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.602481449945263e-5
allele num: 65768
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.718172983479106e-5
allele num: 10290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14432
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.53e1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

DP
type: SiteQuality
SIO_000300: 1.856852e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.763e1

GenotypeQuality
all individuals: 487
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9421
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26171
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variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4495
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.481086098862845e-4
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.861817e6

FS
type: SiteQuality
SIO_000300: 4.662e0

MQRankSum
type: SiteQuality
SIO_000300: -1.173e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.137e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

QD
type: SiteQuality
SIO_000300: 1.252e1

VQSLOD
type: SiteQuality
SIO_000300: -1.155e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
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variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3845
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9464
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4497
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6343
bin: 9.75e1
variant carriers: 17

Latino
type: Population
allele count: 16
allele frequency: 1.385041551246537e-3
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514554872323024e-5
allele num: 66026
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

DP
type: SiteQuality
SIO_000300: 1.876207e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

QD
type: SiteQuality
SIO_000300: 1.347e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 3.01e0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.664e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQ
type: SiteQuality
SIO_000300: 5.169e1

MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

QD
type: SiteQuality
SIO_000300: 6.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.54e0

FS
type: SiteQuality
SIO_000300: 1.438e0

DP
type: SiteQuality
SIO_000300: 1.881408e6

GenotypeQuality
all individuals: 3184
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
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GenotypeQuality
all individuals: 6330
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1459
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505661286437003e-5
allele num: 66416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

MQ
type: SiteQuality
SIO_000300: 5.949e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

DP
type: SiteQuality
SIO_000300: 1.895927e6

VQSLOD
type: SiteQuality
SIO_000300: 6.38e-1

QD
type: SiteQuality
SIO_000300: 1.164e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.03e-1

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6436
bin: 9.75e1
variant carriers: 118

GenotypeQuality
all individuals: 484
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
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variant carriers: 0

GenotypeQuality
all individuals: 9531
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 3848
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variant carriers: 0

GenotypeQuality
all individuals: 3177
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variant carriers: 0

GenotypeQuality
all individuals: 28800
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
type: Population
allele count: 117
allele frequency: 7.338183642749623e-3
allele num: 15944
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66450
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.105e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.899574e6

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

QD
type: SiteQuality
SIO_000300: 1.223e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e-1

FS
type: SiteQuality
SIO_000300: 2.386e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

GenotypeQuality
all individuals: 391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.311604253351826e-4
allele num: 8652
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16086
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.64e-1

FS
type: SiteQuality
SIO_000300: 9.340000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

MQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

DP
type: SiteQuality
SIO_000300: 1.90044e6

MQ
type: SiteQuality
SIO_000300: 5.943e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.385e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.928640308582449e-4
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.3051e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.903366e6

QD
type: SiteQuality
SIO_000300: 1.053e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.498e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501005673801447e-5
allele num: 66622
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

FS
type: SiteQuality
SIO_000300: 2.106e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.084e1

DP
type: SiteQuality
SIO_000300: 1.908954e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

QD
type: SiteQuality
SIO_000300: 1.109e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

VQSLOD
type: SiteQuality
SIO_000300: 4.16e-1

DP
type: SiteQuality
SIO_000300: 1.909123e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.743e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
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MQRankSum
type: SiteQuality
SIO_000300: -1.332e0

VQSLOD
type: SiteQuality
SIO_000300: 6.05e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.001e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.289e0

DP
type: SiteQuality
SIO_000300: 1.910666e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.721e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.99e-1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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QD
type: SiteQuality
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